Wall clock time and date at job start Tue Mar 31 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00315 * 2 1 4 4 H 1.48501 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47011 * 300.00665 * 3 2 1 6 6 H 1.48508 * 109.46806 * 60.00051 * 3 2 1 7 7 C 1.38813 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99881 * 196.90624 * 7 2 1 9 9 N 1.36935 * 120.00019 * 16.91060 * 7 2 1 10 10 C 1.47154 * 120.98234 * 206.22888 * 9 7 2 11 11 C 1.53303 * 108.38383 * 230.54766 * 10 9 7 12 12 O 1.42965 * 109.21800 * 307.69171 * 11 10 9 13 13 C 1.42964 * 114.16421 * 62.58769 * 12 11 10 14 14 H 1.08995 * 109.51544 * 57.38807 * 13 12 11 15 15 C 1.53001 * 109.51002 * 177.49315 * 13 12 11 16 16 N 1.46501 * 109.46998 * 299.89414 * 15 13 12 17 17 C 1.34771 * 119.99651 * 180.02562 * 16 15 13 18 18 O 1.21619 * 120.00638 * 0.02562 * 17 16 15 19 19 C 1.47105 * 119.99750 * 179.97438 * 17 16 15 20 20 C 1.32993 * 120.00061 * 179.97438 * 19 17 16 21 21 C 1.51410 * 136.31629 * 359.63546 * 20 19 17 22 22 C 1.53378 * 87.51639 * 206.05486 * 21 20 19 23 23 C 1.51405 * 136.31612 * 179.97438 * 20 19 17 24 24 C 1.47164 * 120.94375 * 26.26848 * 9 7 2 25 25 H 0.97005 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.68604 * 110.81820 * 10 9 7 27 27 H 1.09001 * 109.71017 * 350.28501 * 10 9 7 28 28 H 1.09001 * 109.51217 * 187.77386 * 11 10 9 29 29 H 1.08992 * 109.51287 * 67.61521 * 11 10 9 30 30 H 1.08997 * 109.47175 * 59.89618 * 15 13 12 31 31 H 1.08998 * 109.47005 * 179.89390 * 15 13 12 32 32 H 0.96995 * 120.00086 * 0.02562 * 16 15 13 33 33 H 1.08000 * 120.00117 * 0.02562 * 19 17 16 34 34 H 1.08995 * 113.55751 * 320.63417 * 21 20 19 35 35 H 1.08999 * 113.56171 * 91.36624 * 21 20 19 36 36 H 1.09001 * 113.96722 * 220.29480 * 22 21 20 37 37 H 1.08997 * 113.70974 * 88.80781 * 22 21 20 38 38 H 1.09001 * 113.56576 * 268.62897 * 23 20 19 39 39 H 1.09001 * 113.55938 * 39.29181 * 23 20 19 40 40 H 1.09005 * 109.72962 * 9.76285 * 24 9 7 41 41 H 1.08995 * 109.64916 * 249.19951 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2225 0.2715 9 7 1.3699 -2.3623 -0.3460 10 6 1.8341 -3.6635 0.1606 11 6 1.9818 -4.6204 -1.0280 12 8 0.7655 -4.6288 -1.7792 13 6 0.4248 -3.3657 -2.3556 14 1 1.2378 -3.0274 -2.9979 15 6 -0.8541 -3.5098 -3.1829 16 7 -0.6369 -4.4884 -4.2512 17 6 -1.6329 -4.7791 -5.1114 18 8 -2.7118 -4.2287 -5.0011 19 6 -1.4147 -5.7614 -6.1845 20 6 -2.3976 -6.0486 -7.0330 21 6 -3.8343 -5.6141 -7.2320 22 6 -4.0828 -6.9727 -7.8991 23 6 -2.5813 -6.9607 -8.2275 24 6 0.1978 -2.3436 -1.2357 25 1 -0.4850 0.8401 0.0004 26 1 1.1060 -4.0638 0.8660 27 1 2.7973 -3.5426 0.6565 28 1 2.1909 -5.6257 -0.6622 29 1 2.8008 -4.2861 -1.6648 30 1 -1.6666 -3.8481 -2.5399 31 1 -1.1143 -2.5460 -3.6204 32 1 0.2236 -4.9271 -4.3395 33 1 -0.4565 -6.2499 -6.2827 34 1 -4.3826 -5.4818 -6.2992 35 1 -3.9438 -4.7686 -7.9111 36 1 -4.7259 -6.9234 -8.7778 37 1 -4.3748 -7.7570 -7.2008 38 1 -2.3474 -6.4843 -9.1796 39 1 -2.1010 -7.9322 -8.1118 40 1 0.0777 -1.3490 -1.6653 41 1 -0.6954 -2.6103 -0.6708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714465013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:34 Heat of formation + Delta-G solvation = -17.906854 kcal Electronic energy + Delta-G solvation = -21745.035335 eV Core-core repulsion = 18433.903104 eV Total energy + Delta-G solvation = -3311.132231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.76583 -38.70817 -38.07466 -34.73190 -34.25809 -31.57958 -31.22666 -30.35609 -27.37625 -25.96974 -25.60546 -23.43852 -23.14298 -21.66572 -20.61797 -19.67056 -18.30967 -16.99651 -16.85152 -16.00880 -15.87863 -15.62607 -15.18592 -14.51024 -14.47588 -14.34850 -14.07353 -13.77655 -13.24878 -12.93556 -12.80014 -12.65960 -12.27771 -12.07942 -11.87606 -11.50722 -11.19601 -11.11411 -10.86678 -10.73882 -10.66559 -10.41469 -10.26001 -10.03392 -9.68223 -9.57202 -9.31960 -9.07378 -8.72720 -8.56468 -6.77237 -5.85902 -3.29722 1.33944 3.32259 3.37121 3.41191 3.43035 3.45895 4.20923 4.28653 4.35583 4.42878 4.56555 4.88980 5.12230 5.19724 5.31296 5.34527 5.41400 5.48505 5.54713 5.59322 5.64263 5.83449 5.86103 5.92831 6.00383 6.04169 6.10188 6.15272 6.25583 6.38555 6.50280 6.51041 6.72732 6.77577 7.06076 7.47122 7.69732 7.78252 7.83832 8.31460 8.46839 9.09239 9.72310 10.29288 11.22167 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.003333 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.521373 B = 8397.595398 C = 9028.468068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.133 3.867 16 N -0.716 5.716 17 C 0.545 3.455 18 O -0.548 6.548 19 C -0.193 4.193 20 C -0.069 4.069 21 C -0.105 4.105 22 C -0.143 4.143 23 C -0.108 4.108 24 C 0.153 3.847 25 H 0.255 0.745 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.402 0.598 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -13.427 -14.185 19.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.319 5.319 10 C -0.017 4.017 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.010 3.990 16 N -0.366 5.366 17 C 0.333 3.667 18 O -0.427 6.427 19 C -0.214 4.214 20 C -0.071 4.071 21 C -0.142 4.142 22 C -0.180 4.180 23 C -0.145 4.145 24 C 0.026 3.974 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.236 0.764 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.848 -13.016 -14.069 19.377 hybrid contribution 1.161 0.859 0.184 1.456 sum -1.687 -12.157 -13.885 18.532 Atomic orbital electron populations 1.70029 1.05249 1.25668 1.53565 1.25069 0.95366 0.98530 1.00702 0.86192 0.79270 0.83720 0.77396 1.20241 1.21416 1.21606 1.19227 0.92651 0.84483 1.42190 0.91308 1.44065 1.33780 1.01375 1.52664 1.21602 0.98604 0.87557 0.93984 1.23005 0.86202 0.99585 0.94006 1.87780 1.42141 1.31565 1.69467 1.23152 0.95059 0.86407 0.95821 0.92645 1.21397 0.97604 0.92410 0.87637 1.45861 1.15572 1.44123 1.31061 1.18412 0.84084 0.82360 0.81846 1.90769 1.25048 1.53073 1.73841 1.21648 0.98992 1.02297 0.98449 1.23418 0.95075 0.94392 0.94191 1.22202 0.92973 0.97004 1.02031 1.22731 0.95848 0.98312 1.01129 1.22342 0.96807 0.98901 0.96442 1.21312 0.89459 0.97613 0.89006 0.93440 0.95558 0.91979 0.90029 0.93870 0.90809 0.90045 0.76392 0.85125 0.89460 0.88533 0.90532 0.89774 0.88265 0.90514 0.88586 0.95067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.14 55.49 0.62 -25.32 16 2 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.26 -6.95 9.65 -15.06 -0.15 -7.09 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 9 N -0.59 -14.89 3.05 -171.81 -0.52 -15.41 16 10 C 0.11 2.27 6.74 -3.53 -0.02 2.24 16 11 C 0.05 0.87 6.99 37.31 0.26 1.13 16 12 O -0.39 -7.29 10.14 -35.23 -0.36 -7.65 16 13 C 0.06 1.05 2.86 -26.57 -0.08 0.98 16 14 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 15 C 0.13 2.34 5.37 -4.04 -0.02 2.32 16 16 N -0.72 -10.70 5.45 -61.49 -0.33 -11.04 16 17 C 0.54 8.44 7.76 -12.67 -0.10 8.34 16 18 O -0.55 -10.34 15.15 5.26 0.08 -10.26 16 19 C -0.19 -2.29 10.03 -37.80 -0.38 -2.67 16 20 C -0.07 -0.75 6.93 -100.48 -0.70 -1.45 16 21 C -0.11 -1.12 6.99 -27.55 -0.19 -1.31 16 22 C -0.14 -1.11 8.17 -26.18 -0.21 -1.32 16 23 C -0.11 -0.82 7.96 -27.39 -0.22 -1.04 16 24 C 0.15 3.63 4.73 -3.52 -0.02 3.61 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.40 5.14 8.33 -40.82 -0.34 4.80 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.09 1.11 7.49 -51.93 -0.39 0.72 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 2.51 6.15 -51.93 -0.32 2.19 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -31.80 336.82 -8.88 -40.68 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.51 Total: 3.82 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.91 Total: 3.71 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.24 Total: -51.76 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.28 Total: -17.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.80 -8.88 -40.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714465013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.776 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds