Wall clock time and date at job start Tue Mar 31 2020 02:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00315 * 2 1 4 4 H 1.48501 * 109.47368 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47011 * 300.00665 * 3 2 1 6 6 H 1.48508 * 109.46806 * 60.00051 * 3 2 1 7 7 C 1.38813 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99881 * 196.90624 * 7 2 1 9 9 N 1.36935 * 120.00019 * 16.91060 * 7 2 1 10 10 C 1.47154 * 120.98234 * 206.22888 * 9 7 2 11 11 C 1.53303 * 108.38383 * 230.54766 * 10 9 7 12 12 O 1.42965 * 109.21800 * 307.69171 * 11 10 9 13 13 C 1.42964 * 114.16421 * 62.58769 * 12 11 10 14 14 H 1.08995 * 109.51544 * 57.38807 * 13 12 11 15 15 C 1.53001 * 109.51002 * 177.49315 * 13 12 11 16 16 N 1.46501 * 109.46998 * 299.89414 * 15 13 12 17 17 C 1.34771 * 119.99651 * 180.02562 * 16 15 13 18 18 O 1.21619 * 120.00638 * 0.02562 * 17 16 15 19 19 C 1.47105 * 119.99750 * 179.97438 * 17 16 15 20 20 C 1.32993 * 120.00061 * 179.97438 * 19 17 16 21 21 C 1.51410 * 136.31629 * 359.63546 * 20 19 17 22 22 C 1.53378 * 87.51639 * 206.05486 * 21 20 19 23 23 C 1.51405 * 136.31612 * 179.97438 * 20 19 17 24 24 C 1.47164 * 120.94375 * 26.26848 * 9 7 2 25 25 H 0.97005 * 120.00065 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.68604 * 110.81820 * 10 9 7 27 27 H 1.09001 * 109.71017 * 350.28501 * 10 9 7 28 28 H 1.09001 * 109.51217 * 187.77386 * 11 10 9 29 29 H 1.08992 * 109.51287 * 67.61521 * 11 10 9 30 30 H 1.08997 * 109.47175 * 59.89618 * 15 13 12 31 31 H 1.08998 * 109.47005 * 179.89390 * 15 13 12 32 32 H 0.96995 * 120.00086 * 0.02562 * 16 15 13 33 33 H 1.08000 * 120.00117 * 0.02562 * 19 17 16 34 34 H 1.08995 * 113.55751 * 320.63417 * 21 20 19 35 35 H 1.08999 * 113.56171 * 91.36624 * 21 20 19 36 36 H 1.09001 * 113.96722 * 220.29480 * 22 21 20 37 37 H 1.08997 * 113.70974 * 88.80781 * 22 21 20 38 38 H 1.09001 * 113.56576 * 268.62897 * 23 20 19 39 39 H 1.09001 * 113.55938 * 39.29181 * 23 20 19 40 40 H 1.09005 * 109.72962 * 9.76285 * 24 9 7 41 41 H 1.08995 * 109.64916 * 249.19951 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2225 0.2715 9 7 1.3699 -2.3623 -0.3460 10 6 1.8341 -3.6635 0.1606 11 6 1.9818 -4.6204 -1.0280 12 8 0.7655 -4.6288 -1.7792 13 6 0.4248 -3.3657 -2.3556 14 1 1.2378 -3.0274 -2.9979 15 6 -0.8541 -3.5098 -3.1829 16 7 -0.6369 -4.4884 -4.2512 17 6 -1.6329 -4.7791 -5.1114 18 8 -2.7118 -4.2287 -5.0011 19 6 -1.4147 -5.7614 -6.1845 20 6 -2.3976 -6.0486 -7.0330 21 6 -3.8343 -5.6141 -7.2320 22 6 -4.0828 -6.9727 -7.8991 23 6 -2.5813 -6.9607 -8.2275 24 6 0.1978 -2.3436 -1.2357 25 1 -0.4850 0.8401 0.0004 26 1 1.1060 -4.0638 0.8660 27 1 2.7973 -3.5426 0.6565 28 1 2.1909 -5.6257 -0.6622 29 1 2.8008 -4.2861 -1.6648 30 1 -1.6666 -3.8481 -2.5399 31 1 -1.1143 -2.5460 -3.6204 32 1 0.2236 -4.9271 -4.3395 33 1 -0.4565 -6.2499 -6.2827 34 1 -4.3826 -5.4818 -6.2992 35 1 -3.9438 -4.7686 -7.9111 36 1 -4.7259 -6.9234 -8.7778 37 1 -4.3748 -7.7570 -7.2008 38 1 -2.3474 -6.4843 -9.1796 39 1 -2.1010 -7.9322 -8.1118 40 1 0.0777 -1.3490 -1.6653 41 1 -0.6954 -2.6103 -0.6708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714465013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:34 Heat of formation + Delta-G solvation = -39.356210 kcal Electronic energy + Delta-G solvation = -21745.965449 eV Core-core repulsion = 18433.903104 eV Total energy + Delta-G solvation = -3312.062344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95289 -40.09094 -39.13454 -36.45913 -35.78359 -33.28239 -32.79712 -31.53458 -29.08264 -27.31422 -26.64366 -25.12694 -24.26932 -23.12942 -21.84276 -21.29850 -19.32201 -18.86322 -17.98718 -17.51418 -17.09610 -16.94816 -16.38621 -16.10558 -15.79583 -15.58574 -15.54475 -15.22056 -14.98411 -14.59968 -14.45355 -13.76114 -13.31617 -13.19250 -13.02672 -12.90862 -12.71119 -12.62697 -12.51856 -12.19786 -12.07609 -11.89462 -11.88885 -11.49239 -11.31357 -10.86534 -10.68714 -10.56791 -10.32324 -9.92987 -8.77680 -7.92884 -5.40683 0.39684 1.44881 1.46724 1.57477 2.16440 2.32425 2.47032 2.77717 3.21835 3.41723 3.49837 3.60800 3.84936 4.01659 4.05314 4.19806 4.26310 4.29137 4.44294 4.50143 4.58778 4.62976 4.66471 4.76310 4.80788 4.87436 4.95492 4.96676 5.05550 5.06030 5.21098 5.27692 5.37573 5.40266 5.50383 5.58628 5.68569 6.24732 6.30975 6.62688 7.03425 7.28095 7.72483 8.26246 9.13184 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.003333 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.521373 B = 8397.595398 C = 9028.468068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.265 4.265 8 H 0.075 0.925 9 N -0.615 5.615 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.390 6.390 13 C 0.078 3.922 14 H 0.066 0.934 15 C 0.144 3.856 16 N -0.706 5.706 17 C 0.538 3.462 18 O -0.592 6.592 19 C -0.208 4.208 20 C -0.071 4.071 21 C -0.122 4.122 22 C -0.133 4.133 23 C -0.092 4.092 24 C 0.160 3.840 25 H 0.251 0.749 26 H 0.014 0.986 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.416 0.584 33 H 0.164 0.836 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.067 0.933 41 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 -15.400 -16.176 22.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.021 4.021 12 O -0.309 6.309 13 C 0.018 3.982 14 H 0.084 0.916 15 C 0.019 3.981 16 N -0.357 5.357 17 C 0.329 3.671 18 O -0.475 6.475 19 C -0.228 4.228 20 C -0.073 4.073 21 C -0.159 4.159 22 C -0.170 4.170 23 C -0.129 4.129 24 C 0.033 3.967 25 H 0.060 0.940 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.140 0.860 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.252 0.748 33 H 0.181 0.819 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -0.995 -15.041 -16.065 22.030 hybrid contribution 0.544 1.432 0.862 1.758 sum -0.451 -13.608 -15.203 20.409 Atomic orbital electron populations 1.70196 1.06813 1.26029 1.55186 1.25878 0.96098 1.01795 1.01039 0.85150 0.78704 0.79457 0.76778 1.18672 1.21589 1.22025 1.19597 0.93082 0.85508 1.41289 0.90699 1.44372 1.33723 1.02486 1.53372 1.21840 0.98577 0.86449 0.95554 1.23098 0.85812 1.00739 0.92427 1.87795 1.43075 1.30606 1.69452 1.22741 0.95836 0.85447 0.94172 0.91642 1.21050 0.96202 0.92776 0.88029 1.45689 1.16341 1.43513 1.30170 1.19125 0.83238 0.82451 0.82276 1.90751 1.26768 1.54897 1.75043 1.21660 1.00985 1.02418 0.97764 1.23951 0.94485 0.94153 0.94745 1.22357 0.93202 0.99181 1.01189 1.22723 0.96841 0.95973 1.01488 1.22385 0.96162 0.98953 0.95383 1.21082 0.88254 0.97507 0.89863 0.93965 0.96750 0.90797 0.86011 0.92623 0.92736 0.90950 0.74771 0.81892 0.92586 0.88152 0.88471 0.89743 0.86244 0.88601 0.91511 0.98376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.88 11.14 21.65 0.24 -55.64 16 2 C -0.05 -2.94 4.94 84.86 0.42 -2.52 16 3 Si 0.97 44.54 29.59 68.60 2.03 46.57 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.27 -14.44 9.65 84.03 0.81 -13.63 16 8 H 0.08 3.91 7.88 -2.91 -0.02 3.89 16 9 N -0.61 -31.07 3.05 -697.48 -2.13 -33.19 16 10 C 0.10 4.11 6.74 86.36 0.58 4.69 16 11 C 0.06 1.82 6.99 72.08 0.50 2.32 16 12 O -0.39 -13.94 10.14 -148.98 -1.51 -15.46 16 13 C 0.08 2.96 2.86 30.70 0.09 3.05 16 14 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 15 C 0.14 5.20 5.37 86.38 0.46 5.67 16 16 N -0.71 -20.76 5.45 -466.71 -2.54 -23.30 16 17 C 0.54 16.67 7.76 86.57 0.67 17.34 16 18 O -0.59 -23.24 15.15 -4.09 -0.06 -23.30 16 19 C -0.21 -4.58 10.03 23.43 0.23 -4.34 16 20 C -0.07 -1.43 6.93 -17.17 -0.12 -1.55 16 21 C -0.12 -2.54 6.99 30.06 0.21 -2.33 16 22 C -0.13 -1.74 8.17 30.95 0.25 -1.49 16 23 C -0.09 -1.07 7.96 30.17 0.24 -0.83 16 24 C 0.16 7.86 4.73 86.35 0.41 8.27 16 25 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 26 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 2.79 7.96 -2.39 -0.02 2.77 16 28 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.42 9.85 8.33 -92.71 -0.77 9.07 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.06 1.51 7.49 -2.39 -0.02 1.49 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 3.66 6.15 -2.38 -0.01 3.65 16 41 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: -1.00 -71.56 336.82 1.04 -70.51 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.25 Total: 19.14 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 4.77 Total: 14.66 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -4.43 Total: -112.13 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.57 Total: -38.76 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.56 1.04 -70.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714465013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.159 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds