Wall clock time and date at job start Tue Mar 31 2020 01:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36940 * 119.99824 * 2 1 4 4 H 1.07998 * 119.99933 * 203.04485 * 3 2 1 5 5 C 1.38807 * 119.99837 * 23.04475 * 3 2 1 6 6 N 1.31623 * 120.00529 * 12.92818 * 5 3 2 7 7 Si 1.86804 * 119.99691 * 192.92927 * 5 3 2 8 8 H 1.48498 * 109.47286 * 90.00105 * 7 5 3 9 9 H 1.48500 * 109.47044 * 209.99959 * 7 5 3 10 10 H 1.48499 * 109.47139 * 329.99600 * 7 5 3 11 11 C 1.46498 * 120.00112 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46822 * 90.00441 * 11 2 1 13 13 N 1.46497 * 109.46998 * 180.02562 * 12 11 2 14 14 C 1.34777 * 120.00066 * 179.97438 * 13 12 11 15 15 O 1.21274 * 120.00095 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99892 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.46963 * 180.02562 * 16 14 13 18 18 C 1.38226 * 120.01406 * 100.00385 * 17 16 14 19 19 C 1.38219 * 120.02706 * 179.97438 * 18 17 16 20 20 C 1.38272 * 120.04832 * 0.02562 * 19 18 17 21 21 C 1.38169 * 120.02854 * 0.02562 * 20 19 18 22 22 C 1.38444 * 120.01238 * 279.72187 * 17 16 14 23 23 F 1.35095 * 120.02290 * 0.02562 * 22 17 16 24 24 H 1.08990 * 109.47263 * 275.12318 * 1 2 3 25 25 H 1.09006 * 109.46856 * 35.12680 * 1 2 3 26 26 H 1.08998 * 109.46809 * 155.12107 * 1 2 3 27 27 H 0.96992 * 120.00238 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.46999 * 330.00335 * 11 2 1 29 29 H 1.09002 * 109.47234 * 210.00094 * 11 2 1 30 30 H 1.08991 * 109.47505 * 59.99936 * 12 11 2 31 31 H 1.09002 * 109.46932 * 299.99838 * 12 11 2 32 32 H 0.97006 * 120.00358 * 359.97438 * 13 12 11 33 33 H 1.09002 * 109.47295 * 299.99875 * 16 14 13 34 34 H 1.09005 * 109.47443 * 60.00243 * 16 14 13 35 35 H 1.07997 * 119.98434 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.97300 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.98332 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.01439 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1651 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3159 4.0074 0.1455 8 1 1.7988 4.5534 -1.1350 9 1 1.9758 4.9364 1.2530 10 1 3.7908 3.8578 0.0602 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 7 3.1846 -2.9799 -1.4412 14 6 3.5211 -3.5643 -2.6082 15 8 3.2175 -3.0398 -3.6587 16 6 4.2746 -4.8694 -2.6076 17 6 4.5257 -5.3050 -4.0282 18 6 5.7598 -5.0853 -4.6109 19 6 5.9906 -5.4852 -5.9137 20 6 4.9873 -6.1050 -6.6358 21 6 3.7527 -6.3247 -6.0558 22 6 3.5224 -5.9307 -4.7483 23 9 2.3176 -6.1506 -4.1781 24 1 -0.3633 0.0918 1.0234 25 1 -0.3633 0.8406 -0.5913 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0154 3.0662 1.4743 28 1 1.6084 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5144 30 1 3.0417 -0.9515 -1.9559 31 1 1.5002 -1.8415 -1.9556 32 1 3.4272 -3.3996 -0.6010 33 1 5.2272 -4.7387 -2.0943 34 1 3.6857 -5.6288 -2.0931 35 1 6.5439 -4.6009 -4.0480 36 1 6.9549 -5.3127 -6.3682 37 1 5.1687 -6.4167 -7.6538 38 1 2.9691 -6.8085 -6.6201 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714569996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:05 Heat of formation + Delta-G solvation = -59.626490 kcal Electronic energy + Delta-G solvation = -21000.982813 eV Core-core repulsion = 17564.581178 eV Total energy + Delta-G solvation = -3436.401635 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.90862 -40.94078 -39.59747 -37.85713 -35.70491 -34.01061 -33.24238 -31.44518 -30.23838 -28.30995 -27.88594 -25.06562 -23.72404 -22.95339 -22.38199 -21.30400 -18.82481 -18.56510 -18.05444 -17.49734 -17.32234 -16.82797 -16.50663 -16.45486 -16.20985 -15.52238 -15.21111 -15.04188 -14.83388 -14.45276 -14.19878 -14.14495 -14.06998 -13.18301 -13.13644 -13.01306 -12.82021 -12.68617 -12.51163 -12.40260 -12.19312 -11.98317 -11.94229 -11.79932 -11.06293 -10.67773 -10.07708 -9.89243 -9.58822 -8.85573 -7.86286 -5.37178 0.20126 0.28989 1.45219 1.47833 1.55787 1.64747 2.17368 2.51036 2.73685 3.27713 3.35750 3.53846 3.73708 3.80546 4.03127 4.09702 4.21014 4.29857 4.32070 4.42106 4.53877 4.58150 4.65117 4.79041 4.97144 5.03688 5.11225 5.13584 5.23447 5.29853 5.39601 5.48569 5.49319 5.60472 5.66937 5.98617 6.29376 6.60142 7.10873 7.29521 7.81307 8.24549 9.16971 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030642 B = 0.003100 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.549119 B = 9030.086309 C = 9456.223754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.617 5.617 3 C -0.269 4.269 4 H 0.071 0.929 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.969 3.031 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.266 1.266 11 C 0.148 3.852 12 C 0.116 3.884 13 N -0.711 5.711 14 C 0.506 3.494 15 O -0.588 6.588 16 C -0.094 4.094 17 C -0.118 4.118 18 C -0.090 4.090 19 C -0.131 4.131 20 C -0.093 4.093 21 C -0.168 4.168 22 C 0.079 3.921 23 F -0.154 7.154 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.029 0.971 27 H 0.250 0.750 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.418 0.582 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.548 -20.671 -10.143 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.399 4.399 4 H 0.089 0.911 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.191 1.191 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.364 5.364 14 C 0.294 3.706 15 O -0.468 6.468 16 C -0.133 4.133 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.149 4.149 20 C -0.111 4.111 21 C -0.187 4.187 22 C 0.060 3.940 23 F -0.133 7.133 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.255 0.745 33 H 0.163 0.837 34 H 0.139 0.861 35 H 0.171 0.829 36 H 0.176 0.824 37 H 0.178 0.822 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.169 -20.167 -10.747 25.890 hybrid contribution -0.519 1.063 0.375 1.241 sum 11.650 -19.104 -10.373 24.663 Atomic orbital electron populations 1.20595 0.82684 0.95866 0.98004 1.44036 1.02212 1.01654 1.86154 1.19522 0.98583 0.86809 1.34987 0.91121 1.25807 0.98588 1.01950 0.98278 1.70221 1.20734 1.27766 1.39562 0.85238 0.78556 0.79699 0.76784 1.21629 1.21790 1.19078 1.20954 0.96958 0.87540 0.92474 1.21828 0.94613 0.84277 1.00390 1.45842 1.57655 1.23760 1.09153 1.21205 0.79112 0.87074 0.83234 1.90701 1.56348 1.66610 1.33117 1.20667 1.03932 0.93785 0.94946 1.19630 0.94659 1.00963 0.96688 1.21301 0.95604 0.97762 0.96122 1.21602 1.00927 0.98275 0.94067 1.21407 0.91436 0.97060 1.01206 1.21412 1.00387 1.03670 0.93191 1.17980 0.80739 1.01817 0.93493 1.91438 1.43681 1.92976 1.85194 0.96886 0.96848 0.95252 0.94126 0.91739 0.91946 0.94390 0.94445 0.74506 0.83716 0.86069 0.82933 0.82384 0.82185 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.78 8.98 127.77 1.15 9.92 16 2 N -0.62 -31.24 2.92 -726.93 -2.12 -33.36 16 3 C -0.27 -14.93 9.65 84.03 0.81 -14.11 16 4 H 0.07 3.81 7.86 -2.91 -0.02 3.79 16 5 C -0.05 -2.88 5.10 84.86 0.43 -2.45 16 6 N -0.94 -55.85 10.71 21.65 0.23 -55.62 16 7 Si 0.97 45.58 29.57 68.60 2.03 47.61 16 8 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 9 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 C 0.15 5.69 5.76 86.38 0.50 6.19 16 12 C 0.12 4.29 6.00 86.38 0.52 4.81 16 13 N -0.71 -19.48 5.56 -463.08 -2.57 -22.05 16 14 C 0.51 14.87 7.82 87.66 0.69 15.55 16 15 O -0.59 -23.59 15.96 -3.01 -0.05 -23.63 16 16 C -0.09 -1.79 5.56 29.10 0.16 -1.63 16 17 C -0.12 -2.62 4.43 -19.82 -0.09 -2.70 16 18 C -0.09 -1.57 9.67 22.26 0.22 -1.35 16 19 C -0.13 -1.91 10.04 22.27 0.22 -1.68 16 20 C -0.09 -1.42 10.04 22.26 0.22 -1.19 16 21 C -0.17 -3.38 10.03 22.31 0.22 -3.16 16 22 C 0.08 1.98 7.14 22.38 0.16 2.14 16 23 F -0.15 -4.41 16.66 44.97 0.75 -3.66 16 24 H 0.01 0.70 7.34 -2.39 -0.02 0.68 16 25 H 0.01 0.71 7.34 -2.38 -0.02 0.69 16 26 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 27 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.06 2.20 8.07 -2.38 -0.02 2.18 16 29 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.42 7.95 8.47 -92.70 -0.79 7.16 16 33 H 0.15 1.62 8.00 -2.39 -0.02 1.60 16 34 H 0.12 1.90 7.94 -2.38 -0.02 1.88 16 35 H 0.15 1.88 8.04 -2.91 -0.02 1.85 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -75.98 330.82 3.76 -72.22 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.28 Total: 8.16 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.21 Total: 10.33 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -4.46 Total: -111.03 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.75 Total: -3.66 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.98 3.76 -72.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714569996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.597 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds