Wall clock time and date at job start Tue Mar 31 2020 01:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48501 * 109.47112 * 269.72614 * 3 2 1 5 5 H 1.48503 * 109.46967 * 29.72657 * 3 2 1 6 6 H 1.48500 * 109.46671 * 149.72546 * 3 2 1 7 7 C 1.38813 * 119.99407 * 179.72980 * 2 1 3 8 8 H 1.08000 * 120.00138 * 338.00369 * 7 2 1 9 9 N 1.36940 * 119.99930 * 158.01201 * 7 2 1 10 10 C 1.47060 * 136.05398 * 349.57123 * 9 7 2 11 11 C 1.53753 * 87.88917 * 152.96487 * 10 9 7 12 12 O 1.42905 * 114.57656 * 272.66422 * 11 10 9 13 13 C 1.52999 * 114.09224 * 139.77505 * 11 10 9 14 14 N 1.46505 * 109.46949 * 86.56518 * 13 11 10 15 15 C 1.34769 * 120.00035 * 180.02562 * 14 13 11 16 16 O 1.21281 * 120.00404 * 359.97438 * 15 14 13 17 17 C 1.50707 * 120.00096 * 180.02562 * 15 14 13 18 18 C 1.53892 * 113.58238 * 279.21033 * 17 15 14 19 19 C 1.53426 * 86.82147 * 220.45385 * 18 17 15 20 20 C 1.52457 * 128.60371 * 165.10040 * 19 18 17 21 21 C 1.52464 * 128.51753 * 245.01391 * 19 18 17 22 22 C 1.53252 * 87.72184 * 25.02119 * 19 18 17 23 23 C 1.47066 * 136.05731 * 169.94032 * 9 7 2 24 24 H 0.96998 * 120.00190 * 183.79655 * 1 2 3 25 25 H 1.08998 * 113.46800 * 267.69468 * 10 9 7 26 26 H 1.09001 * 113.47448 * 38.13825 * 10 9 7 27 27 H 0.96692 * 113.99888 * 273.67191 * 12 11 10 28 28 H 1.09001 * 109.47571 * 206.55993 * 13 11 10 29 29 H 1.08999 * 109.47271 * 326.56706 * 13 11 10 30 30 H 0.97007 * 119.99868 * 359.97438 * 14 13 11 31 31 H 1.08993 * 112.83054 * 50.32373 * 17 15 14 32 32 H 1.08993 * 113.64992 * 334.92637 * 18 17 15 33 33 H 1.09006 * 113.64318 * 105.93448 * 18 17 15 34 34 H 1.08999 * 117.51453 * 224.95960 * 20 19 18 35 35 H 1.09005 * 117.51784 * 10.06452 * 20 19 18 36 36 H 1.08992 * 117.51565 * 349.80597 * 21 19 18 37 37 H 1.09000 * 117.50684 * 134.87203 * 21 19 18 38 38 H 1.09000 * 113.64532 * 220.48549 * 22 19 18 39 39 H 1.08995 * 113.72891 * 89.49099 * 22 19 18 40 40 H 1.08997 * 113.46986 * 321.86946 * 23 9 7 41 41 H 1.08998 * 113.46128 * 92.24814 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5036 2.0431 -1.4001 5 1 1.4448 2.6543 0.6943 6 1 3.5449 1.4417 0.7059 7 6 2.0102 -1.2022 0.0057 8 1 1.5291 -2.1018 0.3602 9 7 3.3049 -1.2476 -0.4382 10 6 4.2145 -0.3334 -1.1450 11 6 5.3845 -1.0610 -0.4624 12 8 5.7346 -0.5469 0.8242 13 6 6.5935 -1.2897 -1.3717 14 7 7.4646 -0.1125 -1.3313 15 6 8.5979 -0.0875 -2.0602 16 8 8.8969 -1.0396 -2.7493 17 6 9.4943 1.1233 -2.0181 18 6 9.0195 2.2727 -2.9246 19 6 10.4951 2.4803 -3.2899 20 6 11.0855 3.2825 -4.4441 21 6 11.3857 3.6825 -2.9968 22 6 10.7275 1.0085 -2.9315 23 6 4.3954 -2.2342 -0.4235 24 1 -0.4850 -0.8382 0.0556 25 1 4.1991 -0.4570 -2.2278 26 1 4.1098 0.7070 -0.8375 27 1 6.3577 0.1919 0.7962 28 1 7.1471 -2.1633 -1.0274 29 1 6.2532 -1.4549 -2.3940 30 1 7.2253 0.6493 -0.7804 31 1 9.7317 1.4386 -1.0022 32 1 8.4040 1.9436 -3.7617 33 1 8.5818 3.1082 -2.3781 34 1 11.8909 2.8227 -5.0168 35 1 10.4084 3.9201 -5.0126 36 1 10.9060 4.5830 -2.6135 37 1 12.3883 3.4856 -2.6171 38 1 11.6572 0.8319 -2.3906 39 1 10.5887 0.3258 -3.7697 40 1 4.4446 -2.8131 0.4987 41 1 4.4269 -2.8595 -1.3157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716941618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:02 Heat of formation + Delta-G solvation = 34.081183 kcal Electronic energy + Delta-G solvation = -22011.724721 eV Core-core repulsion = 18702.846861 eV Total energy + Delta-G solvation = -3308.877860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.70607 -39.54171 -38.34353 -35.27299 -34.14129 -33.88282 -32.29292 -29.12953 -26.52041 -26.05337 -25.45349 -24.18088 -22.78214 -21.44703 -20.48872 -19.54530 -18.68796 -17.95360 -17.38451 -16.49740 -15.97951 -15.84642 -15.44082 -15.25107 -14.86860 -14.49860 -14.10142 -13.80927 -13.29654 -13.10689 -12.91149 -12.72110 -12.57876 -12.35285 -12.01084 -11.82761 -11.81453 -11.50992 -11.06993 -10.78030 -10.68377 -10.62868 -10.33783 -10.04311 -9.96522 -9.71309 -9.31961 -9.21483 -8.97500 -8.64045 -7.19547 -6.36668 -3.22034 2.50751 2.99662 3.36098 3.43329 3.49413 3.65095 4.00183 4.19691 4.25471 4.33430 4.47325 4.53366 4.58058 4.60225 4.76449 4.92170 5.00334 5.02473 5.29651 5.33946 5.42684 5.46210 5.49485 5.51870 5.55433 5.67839 5.79538 5.83013 5.89730 6.00762 6.05448 6.11500 6.18083 6.32120 6.35333 6.51333 7.11607 7.33202 7.84733 8.11215 8.24178 8.95039 9.49863 10.35911 11.14735 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.003921 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.720769 B = 7139.128536 C = 7866.456187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.020 4.020 3 Si 1.063 2.937 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.309 4.309 8 H 0.080 0.920 9 N -0.614 5.614 10 C 0.081 3.919 11 C 0.070 3.930 12 O -0.518 6.518 13 C 0.105 3.895 14 N -0.727 5.727 15 C 0.524 3.476 16 O -0.539 6.539 17 C -0.133 4.133 18 C -0.083 4.083 19 C -0.164 4.164 20 C -0.166 4.166 21 C -0.151 4.151 22 C -0.074 4.074 23 C 0.137 3.863 24 H 0.262 0.738 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.362 0.638 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.397 0.603 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.657 6.318 -5.301 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.220 4.220 3 Si 0.896 3.104 4 H -0.223 1.223 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.435 4.435 8 H 0.098 0.902 9 N -0.341 5.341 10 C -0.045 4.045 11 C 0.027 3.973 12 O -0.321 6.321 13 C -0.020 4.020 14 N -0.379 5.379 15 C 0.310 3.690 16 O -0.416 6.416 17 C -0.154 4.154 18 C -0.121 4.121 19 C -0.164 4.164 20 C -0.202 4.202 21 C -0.188 4.188 22 C -0.112 4.112 23 C 0.010 3.990 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.208 0.792 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.232 0.768 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.950 6.768 -5.520 24.555 hybrid contribution 0.338 -0.866 0.130 0.938 sum 23.287 5.902 -5.390 24.621 Atomic orbital electron populations 1.70935 1.05619 1.29660 1.50197 1.25755 0.96249 1.00912 0.99060 0.83783 0.74698 0.75758 0.76209 1.22343 1.22366 1.20688 1.19965 0.84504 0.96706 1.42322 0.90246 1.45566 1.10433 1.13545 1.64533 1.23414 0.88679 0.96417 0.95968 1.23292 0.90968 0.99364 0.83637 1.86687 1.66532 1.52520 1.26374 1.21963 0.90751 0.88289 1.00994 1.46004 1.23565 1.20076 1.48296 1.20461 0.81122 0.88515 0.78891 1.90694 1.73124 1.36955 1.40833 1.22639 0.97201 0.94356 1.01220 1.22458 0.94280 0.96675 0.98652 1.22180 0.95892 0.93754 1.04546 1.22805 1.03210 1.03124 0.91102 1.22797 0.99915 0.97240 0.98866 1.22366 0.96344 0.93488 0.98980 1.22386 0.84720 0.91994 0.99948 0.92727 0.93234 0.93087 0.79193 0.90554 0.90018 0.76804 0.86710 0.89086 0.90353 0.88645 0.88620 0.88515 0.88579 0.90971 0.88255 0.92517 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.28 13.71 55.49 0.76 -28.52 16 2 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 3 Si 1.06 26.69 25.32 -169.99 -4.30 22.38 16 4 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -6.56 6.55 56.52 0.37 -6.19 16 7 C -0.31 -9.07 10.96 -15.06 -0.17 -9.23 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.61 -15.30 3.56 -184.59 -0.66 -15.96 16 10 C 0.08 1.68 6.63 -8.38 -0.06 1.62 16 11 C 0.07 1.20 1.74 -89.97 -0.16 1.04 16 12 O -0.52 -8.86 13.57 -35.23 -0.48 -9.33 16 13 C 0.10 1.44 5.42 -4.04 -0.02 1.42 16 14 N -0.73 -8.24 5.34 -60.29 -0.32 -8.57 16 15 C 0.52 6.29 7.35 -10.99 -0.08 6.21 16 16 O -0.54 -8.51 15.90 5.56 0.09 -8.42 16 17 C -0.13 -1.16 4.14 -90.84 -0.38 -1.54 16 18 C -0.08 -0.68 7.66 -26.05 -0.20 -0.88 16 19 C -0.16 -1.28 3.09 -154.71 -0.48 -1.76 16 20 C -0.17 -1.17 10.53 -26.94 -0.28 -1.45 16 21 C -0.15 -0.99 10.53 -26.94 -0.28 -1.27 16 22 C -0.07 -0.66 7.42 -26.14 -0.19 -0.85 16 23 C 0.14 2.71 8.10 -8.51 -0.07 2.65 16 24 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 25 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 26 H 0.05 1.09 3.70 -51.93 -0.19 0.90 16 27 H 0.36 4.38 7.21 45.56 0.33 4.71 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 30 H 0.40 3.61 6.95 -40.82 -0.28 3.33 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 1.05 7.44 -51.93 -0.39 0.66 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -35.65 334.61 -7.94 -43.58 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.61 Total: 4.52 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.46 Total: -4.73 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.22 Total: -53.04 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.39 Total: -17.75 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -4.30 Total: 22.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.65 -7.94 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716941618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.663 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds