Wall clock time and date at job start Tue Mar 31 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00126 * 2 1 4 4 H 1.48501 * 109.47112 * 269.72614 * 3 2 1 5 5 H 1.48503 * 109.46967 * 29.72657 * 3 2 1 6 6 H 1.48500 * 109.46671 * 149.72546 * 3 2 1 7 7 C 1.38813 * 119.99407 * 179.72980 * 2 1 3 8 8 H 1.08000 * 120.00138 * 338.00369 * 7 2 1 9 9 N 1.36940 * 119.99930 * 158.01201 * 7 2 1 10 10 C 1.47060 * 136.05398 * 349.57123 * 9 7 2 11 11 C 1.53753 * 87.88917 * 152.96487 * 10 9 7 12 12 O 1.42905 * 114.57656 * 272.66422 * 11 10 9 13 13 C 1.52999 * 114.09224 * 139.77505 * 11 10 9 14 14 N 1.46505 * 109.46949 * 86.56518 * 13 11 10 15 15 C 1.34769 * 120.00035 * 180.02562 * 14 13 11 16 16 O 1.21281 * 120.00404 * 359.97438 * 15 14 13 17 17 C 1.50707 * 120.00096 * 180.02562 * 15 14 13 18 18 C 1.53892 * 113.58238 * 279.21033 * 17 15 14 19 19 C 1.53426 * 86.82147 * 220.45385 * 18 17 15 20 20 C 1.52457 * 128.60371 * 165.10040 * 19 18 17 21 21 C 1.52464 * 128.51753 * 245.01391 * 19 18 17 22 22 C 1.53252 * 87.72184 * 25.02119 * 19 18 17 23 23 C 1.47066 * 136.05731 * 169.94032 * 9 7 2 24 24 H 0.96998 * 120.00190 * 183.79655 * 1 2 3 25 25 H 1.08998 * 113.46800 * 267.69468 * 10 9 7 26 26 H 1.09001 * 113.47448 * 38.13825 * 10 9 7 27 27 H 0.96692 * 113.99888 * 273.67191 * 12 11 10 28 28 H 1.09001 * 109.47571 * 206.55993 * 13 11 10 29 29 H 1.08999 * 109.47271 * 326.56706 * 13 11 10 30 30 H 0.97007 * 119.99868 * 359.97438 * 14 13 11 31 31 H 1.08993 * 112.83054 * 50.32373 * 17 15 14 32 32 H 1.08993 * 113.64992 * 334.92637 * 18 17 15 33 33 H 1.09006 * 113.64318 * 105.93448 * 18 17 15 34 34 H 1.08999 * 117.51453 * 224.95960 * 20 19 18 35 35 H 1.09005 * 117.51784 * 10.06452 * 20 19 18 36 36 H 1.08992 * 117.51565 * 349.80597 * 21 19 18 37 37 H 1.09000 * 117.50684 * 134.87203 * 21 19 18 38 38 H 1.09000 * 113.64532 * 220.48549 * 22 19 18 39 39 H 1.08995 * 113.72891 * 89.49099 * 22 19 18 40 40 H 1.08997 * 113.46986 * 321.86946 * 23 9 7 41 41 H 1.08998 * 113.46128 * 92.24814 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5036 2.0431 -1.4001 5 1 1.4448 2.6543 0.6943 6 1 3.5449 1.4417 0.7059 7 6 2.0102 -1.2022 0.0057 8 1 1.5291 -2.1018 0.3602 9 7 3.3049 -1.2476 -0.4382 10 6 4.2145 -0.3334 -1.1450 11 6 5.3845 -1.0610 -0.4624 12 8 5.7346 -0.5469 0.8242 13 6 6.5935 -1.2897 -1.3717 14 7 7.4646 -0.1125 -1.3313 15 6 8.5979 -0.0875 -2.0602 16 8 8.8969 -1.0396 -2.7493 17 6 9.4943 1.1233 -2.0181 18 6 9.0195 2.2727 -2.9246 19 6 10.4951 2.4803 -3.2899 20 6 11.0855 3.2825 -4.4441 21 6 11.3857 3.6825 -2.9968 22 6 10.7275 1.0085 -2.9315 23 6 4.3954 -2.2342 -0.4235 24 1 -0.4850 -0.8382 0.0556 25 1 4.1991 -0.4570 -2.2278 26 1 4.1098 0.7070 -0.8375 27 1 6.3577 0.1919 0.7962 28 1 7.1471 -2.1633 -1.0274 29 1 6.2532 -1.4549 -2.3940 30 1 7.2253 0.6493 -0.7804 31 1 9.7317 1.4386 -1.0022 32 1 8.4040 1.9436 -3.7617 33 1 8.5818 3.1082 -2.3781 34 1 11.8909 2.8227 -5.0168 35 1 10.4084 3.9201 -5.0126 36 1 10.9060 4.5830 -2.6135 37 1 12.3883 3.4856 -2.6171 38 1 11.6572 0.8319 -2.3906 39 1 10.5887 0.3258 -3.7697 40 1 4.4446 -2.8131 0.4987 41 1 4.4269 -2.8595 -1.3157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716941618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:01 Heat of formation + Delta-G solvation = 6.197298 kcal Electronic energy + Delta-G solvation = -22012.933857 eV Core-core repulsion = 18702.846861 eV Total energy + Delta-G solvation = -3310.086996 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61789 -40.83518 -39.24811 -36.75261 -35.26703 -34.52895 -34.40445 -30.68269 -28.03498 -27.07923 -26.69181 -25.21678 -23.30789 -23.10426 -21.46650 -21.06725 -19.73778 -19.27767 -18.67632 -17.75130 -17.20192 -16.70497 -16.53933 -16.08209 -15.98943 -15.95736 -15.59840 -15.19984 -14.90455 -14.54928 -14.13542 -13.65050 -13.54319 -13.35692 -13.20411 -12.95016 -12.81674 -12.71217 -12.46454 -12.29126 -11.88388 -11.67784 -11.35933 -11.30108 -11.21747 -10.80566 -10.73073 -10.66709 -10.48714 -10.15304 -9.25661 -8.70053 -5.46852 1.35849 1.52796 1.59884 1.71021 2.07101 2.53155 2.84953 2.87617 2.94420 3.20807 3.30434 3.42059 3.56995 3.68827 3.78527 3.90975 3.96646 4.20117 4.28463 4.44309 4.51103 4.57723 4.65020 4.73752 4.79436 4.79966 4.82061 4.84222 4.87571 5.00160 5.03583 5.09055 5.20436 5.26918 5.31512 5.32668 5.40558 5.93670 6.45713 6.66310 6.75473 7.20923 7.31317 8.25962 8.83531 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.003921 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.720769 B = 7139.128536 C = 7866.456187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.081 4.081 3 Si 1.107 2.893 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.252 1.252 7 C -0.301 4.301 8 H 0.042 0.958 9 N -0.650 5.650 10 C 0.072 3.928 11 C 0.106 3.894 12 O -0.535 6.535 13 C 0.119 3.881 14 N -0.717 5.717 15 C 0.524 3.476 16 O -0.581 6.581 17 C -0.124 4.124 18 C -0.081 4.081 19 C -0.172 4.172 20 C -0.173 4.173 21 C -0.138 4.138 22 C -0.080 4.080 23 C 0.126 3.874 24 H 0.247 0.753 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.386 0.614 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.411 0.589 31 H 0.143 0.857 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.756 8.298 -5.337 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.274 4.274 3 Si 0.933 3.067 4 H -0.200 1.200 5 H -0.231 1.231 6 H -0.177 1.177 7 C -0.429 4.429 8 H 0.060 0.940 9 N -0.378 5.378 10 C -0.052 4.052 11 C 0.063 3.937 12 O -0.342 6.342 13 C -0.006 4.006 14 N -0.371 5.371 15 C 0.312 3.688 16 O -0.460 6.460 17 C -0.145 4.145 18 C -0.119 4.119 19 C -0.172 4.172 20 C -0.210 4.210 21 C -0.175 4.175 22 C -0.117 4.117 23 C 0.000 4.000 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.236 0.764 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.249 0.751 31 H 0.161 0.839 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.110 8.746 -5.556 28.091 hybrid contribution -0.584 -1.618 0.127 1.725 sum 25.526 7.128 -5.430 27.053 Atomic orbital electron populations 1.71050 1.06941 1.28770 1.53562 1.27177 0.96276 1.04746 0.99219 0.83272 0.74442 0.71419 0.77605 1.20004 1.23129 1.17749 1.19827 0.86773 0.95374 1.40910 0.93960 1.45671 1.09957 1.16570 1.65564 1.23698 0.88893 0.95952 0.96704 1.22699 0.90989 0.96299 0.83733 1.86645 1.67469 1.53816 1.26278 1.21642 0.89669 0.89438 0.99850 1.45884 1.23053 1.19790 1.48382 1.21031 0.81087 0.88864 0.77807 1.90686 1.74049 1.38757 1.42547 1.22719 0.96152 0.92867 1.02762 1.22436 0.94416 0.96819 0.98184 1.22150 0.95859 0.93445 1.05708 1.22891 1.03356 1.03153 0.91616 1.22892 0.99995 0.96658 0.97969 1.22328 0.96937 0.93976 0.98486 1.22667 0.84124 0.92653 1.00549 0.94401 0.91754 0.93105 0.76419 0.90090 0.90153 0.75130 0.83936 0.90544 0.88559 0.88573 0.88358 0.87457 0.87753 0.90133 0.90620 0.93281 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.74 13.71 21.65 0.30 -62.45 16 2 C -0.08 -4.94 5.50 84.86 0.47 -4.48 16 3 Si 1.11 52.96 25.32 68.60 1.74 54.70 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.25 -10.77 6.55 99.48 0.65 -10.12 16 7 C -0.30 -18.06 10.96 84.03 0.92 -17.13 16 8 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 9 N -0.65 -31.86 3.56 -738.41 -2.63 -34.49 16 10 C 0.07 2.79 6.63 83.27 0.55 3.34 16 11 C 0.11 3.27 1.74 -10.37 -0.02 3.26 16 12 O -0.54 -16.37 13.57 -148.98 -2.02 -18.39 16 13 C 0.12 2.90 5.42 86.38 0.47 3.36 16 14 N -0.72 -13.68 5.34 -463.05 -2.47 -16.16 16 15 C 0.52 11.17 7.35 87.66 0.64 11.81 16 16 O -0.58 -17.46 15.90 -3.03 -0.05 -17.50 16 17 C -0.12 -1.77 4.14 -10.94 -0.05 -1.82 16 18 C -0.08 -1.07 7.66 31.04 0.24 -0.84 16 19 C -0.17 -2.24 3.09 -52.31 -0.16 -2.40 16 20 C -0.17 -2.07 10.53 30.46 0.32 -1.75 16 21 C -0.14 -1.35 10.53 30.46 0.32 -1.03 16 22 C -0.08 -1.26 7.42 30.98 0.23 -1.03 16 23 C 0.13 4.82 8.10 83.18 0.67 5.49 16 24 H 0.25 16.26 8.73 -92.71 -0.81 15.45 16 25 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 26 H 0.05 1.97 3.70 -2.39 -0.01 1.97 16 27 H 0.39 7.53 7.21 -74.06 -0.53 6.99 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 2.04 7.89 -2.39 -0.02 2.02 16 30 H 0.41 5.58 6.95 -92.70 -0.64 4.94 16 31 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 33 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.56 7.44 -2.39 -0.02 1.54 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 41 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 Total: -1.00 -79.39 334.61 -0.75 -80.14 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.22 Total: 17.35 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 4.61 Total: -3.20 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -4.80 Total: -113.09 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -2.07 Total: -35.89 kcal Atomic # 14 Polarization: 52.96 SS G_CDS: 1.74 Total: 54.70 kcal Total: -79.39 -0.75 -80.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716941618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.333 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds