Wall clock time and date at job start Tue Mar 31 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00095 * 2 1 4 4 H 1.48500 * 109.47247 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.47038 * 29.99614 * 3 2 1 6 6 H 1.48498 * 109.47527 * 149.99837 * 3 2 1 7 7 C 1.38813 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00489 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99231 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99622 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47111 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.51537 * 305.10515 * 11 10 9 13 13 C 1.53297 * 109.51164 * 184.99831 * 11 10 9 14 14 N 1.47150 * 108.41463 * 187.70598 * 13 11 10 15 15 C 1.34777 * 120.98603 * 230.54242 * 14 13 11 16 16 O 1.21288 * 119.99686 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00359 * 180.02562 * 15 14 13 18 18 H 1.09000 * 115.54702 * 34.28719 * 17 15 14 19 19 C 1.52997 * 117.49817 * 248.60811 * 17 15 14 20 20 C 1.52995 * 117.49769 * 179.97438 * 17 15 14 21 21 C 1.52987 * 138.59048 * 336.60448 * 20 17 15 22 22 C 1.52986 * 138.59179 * 238.38034 * 20 17 15 23 23 C 1.47227 * 117.98768 * 50.52570 * 14 13 11 24 24 C 1.53299 * 108.40126 * 309.48190 * 23 14 13 25 25 O 1.42959 * 109.22435 * 52.30769 * 24 23 14 26 26 H 0.97001 * 120.00346 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00453 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.47060 * 59.99967 * 10 9 7 29 29 H 1.08998 * 109.47246 * 300.00505 * 10 9 7 30 30 H 1.09002 * 109.68431 * 307.45213 * 13 11 10 31 31 H 1.08999 * 109.67914 * 67.96799 * 13 11 10 32 32 H 1.08999 * 117.50367 * 0.02562 * 19 17 15 33 33 H 1.09004 * 117.49261 * 145.02690 * 19 17 15 34 34 H 1.09003 * 117.50061 * 336.58872 * 21 20 17 35 35 H 1.09003 * 117.50467 * 121.61297 * 21 20 17 36 36 H 1.09000 * 117.50664 * 238.39058 * 22 20 17 37 37 H 1.09005 * 117.49682 * 23.38885 * 22 20 17 38 38 H 1.09000 * 109.67268 * 189.75452 * 23 14 13 39 39 H 1.08998 * 109.67934 * 69.21015 * 23 14 13 40 40 H 1.08996 * 109.51416 * 292.37699 * 24 23 14 41 41 H 1.09006 * 109.50766 * 172.23087 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3785 -4.7123 0.8419 13 6 1.8252 -6.1442 0.1271 14 7 0.8711 -7.2485 -0.0609 15 6 0.8023 -8.2641 0.8225 16 8 1.5334 -8.2765 1.7902 17 6 -0.1828 -9.3841 0.6080 18 1 -0.3687 -9.6540 -0.4316 19 6 -1.3543 -9.4916 1.5863 20 6 -0.2118 -10.5078 1.6459 21 6 0.7174 -11.1296 2.6901 22 6 -0.0280 -12.0257 1.6991 23 6 -0.0061 -7.2101 -1.2427 24 6 -0.6783 -5.8336 -1.3019 25 8 0.3234 -4.8168 -1.2218 26 1 -0.4851 0.8400 0.0004 27 1 0.3555 -2.3880 -0.0002 28 1 2.6847 -3.7145 0.8905 29 1 2.6847 -3.7145 -0.8894 30 1 2.6013 -6.1956 -0.6366 31 1 2.2781 -6.2147 1.1160 32 1 -1.4127 -8.7520 2.3848 33 1 -2.3109 -9.8326 1.1902 34 1 1.7908 -11.0046 2.5468 35 1 0.3788 -11.1343 3.7262 36 1 -0.8571 -12.6201 2.0830 37 1 0.5546 -12.4903 0.9035 38 1 -0.7665 -7.9868 -1.1607 39 1 0.5855 -7.3688 -2.1443 40 1 -1.3700 -5.7300 -0.4660 41 1 -1.2233 -5.7347 -2.2408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717180644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:13 Heat of formation + Delta-G solvation = 3.912697 kcal Electronic energy + Delta-G solvation = -21927.277415 eV Core-core repulsion = 18617.091351 eV Total energy + Delta-G solvation = -3310.186064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53453 -38.84503 -37.39905 -35.03106 -34.36950 -32.95200 -32.11954 -30.17825 -28.17221 -26.12138 -23.85584 -23.48866 -22.65123 -22.15156 -20.89937 -20.01032 -18.62140 -17.58257 -17.03838 -16.48037 -15.92908 -15.47798 -15.24416 -15.08561 -15.07488 -14.49849 -14.39131 -13.99044 -13.30936 -13.12458 -12.93157 -12.55907 -12.44842 -12.15602 -11.92966 -11.72965 -11.60100 -10.99567 -10.87393 -10.78890 -10.50808 -10.43717 -10.37494 -10.26502 -10.06198 -9.89726 -9.77143 -9.63109 -8.85219 -8.52749 -6.87785 -5.71417 -3.00106 2.33517 2.67909 3.42973 3.47236 3.48111 3.51893 3.53812 3.94559 3.98890 4.32410 4.48535 4.59705 4.71261 4.75212 4.91180 5.05010 5.11252 5.16924 5.25558 5.32863 5.34115 5.36557 5.39630 5.49829 5.61451 5.65242 5.67337 5.68631 5.72536 5.89774 5.91767 5.96941 6.28013 6.33860 6.57713 6.71031 7.25681 7.47065 7.73530 8.06765 8.46677 9.58356 10.15370 10.51328 11.51474 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037642 B = 0.003185 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.666028 B = 8788.383788 C = 9043.567992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.086 3.914 14 N -0.611 5.611 15 C 0.543 3.457 16 O -0.534 6.534 17 C -0.142 4.142 18 H 0.124 0.876 19 C -0.099 4.099 20 C -0.202 4.202 21 C -0.113 4.113 22 C -0.130 4.130 23 C 0.072 3.928 24 C 0.046 3.954 25 O -0.358 6.358 26 H 0.255 0.745 27 H 0.387 0.613 28 H 0.036 0.964 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -24.158 -0.534 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.345 5.345 15 C 0.331 3.669 16 O -0.410 6.410 17 C -0.163 4.163 18 H 0.142 0.858 19 C -0.136 4.136 20 C -0.202 4.202 21 C -0.150 4.150 22 C -0.166 4.166 23 C -0.051 4.051 24 C -0.032 4.032 25 O -0.276 6.276 26 H 0.064 0.936 27 H 0.221 0.779 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.953 -23.900 -0.150 24.082 hybrid contribution 0.008 0.794 -0.093 0.800 sum -2.945 -23.106 -0.243 23.294 Atomic orbital electron populations 1.69672 1.05123 1.25564 1.57738 1.24744 0.95532 0.97681 1.03057 0.86172 0.78622 0.83791 0.77499 1.21725 1.21805 1.20755 1.19230 0.91032 0.84081 1.42661 0.91123 1.42236 1.06009 0.99509 1.89358 1.20619 0.92415 0.84639 0.98821 1.22793 0.94193 0.94214 0.87246 0.91875 1.22341 0.91757 0.85404 1.04211 1.48116 1.38717 1.22892 1.24793 1.19686 0.83326 0.81915 0.81947 1.90693 1.43363 1.77576 1.29372 1.21972 1.00607 0.96348 0.97366 0.85782 1.22680 0.91821 0.99400 0.99738 1.21163 1.03342 0.92621 1.03120 1.22601 0.97903 0.99724 0.94768 1.22764 1.02576 0.89266 1.02030 1.22550 0.94438 0.99766 0.88351 1.22913 0.90905 0.86461 1.02944 1.88157 1.49613 1.52084 1.37772 0.93563 0.77919 0.94643 0.95258 0.90469 0.88074 0.87942 0.87463 0.88180 0.88472 0.88313 0.88571 0.88962 0.90439 0.92774 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.88 13.06 55.49 0.72 -28.16 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.24 5.55 -59.91 -0.33 -19.57 16 10 C 0.16 3.42 5.93 -4.04 -0.02 3.40 16 11 C 0.07 1.30 2.81 -26.58 -0.07 1.23 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C 0.09 1.28 5.92 -3.53 -0.02 1.26 16 14 N -0.61 -8.02 3.02 -172.21 -0.52 -8.54 16 15 C 0.54 7.43 7.50 -10.99 -0.08 7.35 16 16 O -0.53 -9.14 15.71 5.55 0.09 -9.05 16 17 C -0.14 -1.43 4.95 -91.78 -0.45 -1.88 16 18 H 0.12 0.96 6.91 -51.93 -0.36 0.60 16 19 C -0.10 -0.88 10.24 -26.72 -0.27 -1.15 16 20 C -0.20 -1.99 5.05 -154.51 -0.78 -2.77 16 21 C -0.11 -1.09 10.16 -26.74 -0.27 -1.36 16 22 C -0.13 -0.98 10.53 -26.74 -0.28 -1.26 16 23 C 0.07 0.73 6.48 -3.49 -0.02 0.71 16 24 C 0.05 0.57 6.99 37.31 0.26 0.83 16 25 O -0.36 -6.30 10.34 -35.23 -0.36 -6.67 16 26 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.39 10.86 7.67 -40.82 -0.31 10.55 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.10 1.59 7.08 -51.93 -0.37 1.22 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.67 5.84 -51.93 -0.30 0.37 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -34.59 340.09 -8.96 -43.55 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.38 Total: 6.70 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.27 Total: -1.21 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.13 Total: -56.27 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.28 Total: -15.72 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.59 -8.96 -43.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717180644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.465 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds