Wall clock time and date at job start Tue Mar 31 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99714 * 2 1 4 4 H 1.48510 * 109.46623 * 269.99539 * 3 2 1 5 5 H 1.48500 * 109.47457 * 29.99379 * 3 2 1 6 6 H 1.48502 * 109.47053 * 150.00009 * 3 2 1 7 7 C 1.38812 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99526 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99928 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.51102 * 60.00374 * 11 10 9 13 13 C 1.53300 * 109.51126 * 180.10382 * 11 10 9 14 14 N 1.47263 * 108.32670 * 172.23406 * 13 11 10 15 15 C 1.34772 * 120.95916 * 129.46524 * 14 13 11 16 16 O 1.21283 * 120.00043 * 0.03282 * 15 14 13 17 17 C 1.50702 * 120.00026 * 180.02562 * 15 14 13 18 18 H 1.08998 * 115.55120 * 34.28779 * 17 15 14 19 19 C 1.52995 * 117.49923 * 248.60899 * 17 15 14 20 20 C 1.52986 * 60.00444 * 252.51460 * 19 17 15 21 21 C 1.52992 * 138.59221 * 130.88818 * 20 19 17 22 22 C 1.52992 * 138.59256 * 229.11198 * 20 19 17 23 23 C 1.47152 * 118.06134 * 309.49293 * 14 13 11 24 24 C 1.53299 * 108.38544 * 50.53095 * 23 14 13 25 25 O 1.42961 * 109.51369 * 299.90321 * 11 10 9 26 26 H 0.96997 * 119.99908 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00592 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.46890 * 60.00584 * 10 9 7 29 29 H 1.08993 * 109.47248 * 300.00406 * 10 9 7 30 30 H 1.08995 * 109.67999 * 292.00054 * 13 11 10 31 31 H 1.09004 * 109.67971 * 52.55520 * 13 11 10 32 32 H 1.08997 * 117.50070 * 0.02562 * 19 17 15 33 33 H 1.09000 * 117.49718 * 145.00072 * 19 17 15 34 34 H 1.09001 * 117.50407 * 238.39316 * 21 20 19 35 35 H 1.08997 * 117.49617 * 23.41346 * 21 20 19 36 36 H 1.09002 * 117.49895 * 336.59505 * 22 20 19 37 37 H 1.09000 * 117.49872 * 121.59060 * 22 20 19 38 38 H 1.09000 * 109.68168 * 290.81098 * 23 14 13 39 39 H 1.08998 * 109.71550 * 170.27358 * 23 14 13 40 40 H 1.09003 * 109.51516 * 187.77653 * 24 23 14 41 41 H 1.08998 * 109.51002 * 67.62195 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6567 0.0016 11 6 1.0640 -4.8197 0.0022 12 1 0.4367 -4.7628 -0.8873 13 6 1.8296 -6.1478 0.0049 14 7 0.8607 -7.2404 0.1943 15 6 0.8475 -8.3062 -0.6305 16 8 1.6417 -8.3755 -1.5445 17 6 -0.1540 -9.4119 -0.4170 18 1 -1.1279 -9.0980 -0.0414 19 6 0.3795 -10.7679 0.0490 20 6 -0.1182 -10.5944 -1.3872 21 6 0.3553 -10.8972 -2.8101 22 6 -1.0536 -11.3004 -2.3707 23 6 -0.0929 -7.1343 1.3100 24 6 -0.7639 -5.7576 1.2432 25 8 0.2436 -4.7458 1.1706 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0016 28 1 2.6855 -3.7141 0.8912 29 1 2.6842 -3.7148 -0.8887 30 1 2.3470 -6.2751 -0.9460 31 1 2.5528 -6.1530 0.8205 32 1 1.4547 -10.8603 0.2017 33 1 -0.2434 -11.3463 0.7314 34 1 0.4467 -10.0579 -3.4995 35 1 1.0896 -11.6926 -2.9376 36 1 -1.2463 -12.3610 -2.2090 37 1 -1.8895 -10.7264 -2.7706 38 1 0.4368 -7.2389 2.2569 39 1 -0.8483 -7.9154 1.2237 40 1 -1.3702 -5.6043 2.1361 41 1 -1.3979 -5.7041 0.3582 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717180645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:15 Heat of formation + Delta-G solvation = 4.838291 kcal Electronic energy + Delta-G solvation = -21916.412191 eV Core-core repulsion = 18606.266264 eV Total energy + Delta-G solvation = -3310.145927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53687 -38.84822 -37.39819 -35.03450 -34.35333 -32.95348 -32.12139 -30.17474 -28.16907 -26.12613 -23.89812 -23.47721 -22.64412 -22.13297 -20.83185 -20.06455 -18.63686 -17.58250 -17.06418 -16.47047 -15.93676 -15.58777 -15.25710 -15.12313 -14.76009 -14.48014 -14.45339 -14.09087 -13.32849 -13.12911 -12.90208 -12.59495 -12.39964 -12.22296 -11.90924 -11.72974 -11.55612 -10.99741 -10.88525 -10.77446 -10.51433 -10.43495 -10.38082 -10.26616 -10.06572 -9.87875 -9.77087 -9.62543 -8.84661 -8.52588 -6.87075 -5.70909 -2.99527 2.33107 2.68874 3.42452 3.47112 3.47434 3.52000 3.54042 3.94275 3.98509 4.31423 4.48297 4.60140 4.69552 4.75615 4.91322 5.03403 5.11987 5.14945 5.27803 5.32242 5.34643 5.35460 5.39361 5.51193 5.61594 5.62550 5.67010 5.69388 5.72703 5.89201 5.93302 5.97177 6.28697 6.33541 6.57575 6.71172 7.25681 7.47023 7.73787 8.06653 8.47255 9.58981 10.16278 10.52480 11.51938 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.003176 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.491115 B = 8814.446818 C = 9037.495303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.062 0.938 13 C 0.086 3.914 14 N -0.611 5.611 15 C 0.543 3.457 16 O -0.534 6.534 17 C -0.142 4.142 18 H 0.125 0.875 19 C -0.099 4.099 20 C -0.202 4.202 21 C -0.113 4.113 22 C -0.129 4.129 23 C 0.072 3.928 24 C 0.045 3.955 25 O -0.356 6.356 26 H 0.254 0.746 27 H 0.388 0.612 28 H 0.029 0.971 29 H 0.035 0.965 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -24.282 1.088 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.080 0.920 13 C -0.037 4.037 14 N -0.345 5.345 15 C 0.331 3.669 16 O -0.411 6.411 17 C -0.163 4.163 18 H 0.143 0.857 19 C -0.136 4.136 20 C -0.203 4.203 21 C -0.150 4.150 22 C -0.166 4.166 23 C -0.051 4.051 24 C -0.034 4.034 25 O -0.274 6.274 26 H 0.064 0.936 27 H 0.222 0.778 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.754 -24.044 0.747 24.213 hybrid contribution -0.056 0.841 0.009 0.842 sum -2.810 -23.204 0.755 23.385 Atomic orbital electron populations 1.69677 1.05115 1.25541 1.57735 1.24745 0.95529 0.97666 1.03074 0.86176 0.78637 0.83817 0.77472 1.21756 1.21788 1.20756 1.19232 0.91024 0.84100 1.42656 0.91141 1.42213 1.06065 0.99448 1.89317 1.20627 0.92367 0.84715 0.98779 1.22794 0.92993 0.94258 0.88449 0.91978 1.22367 0.91564 0.85601 1.04150 1.48130 1.35399 1.20687 1.30257 1.19671 0.84032 0.81898 0.81283 1.90691 1.40743 1.78284 1.31334 1.21987 1.00201 0.88996 1.05143 0.85716 1.22648 1.01618 0.95171 0.94167 1.21161 1.08347 1.00627 0.90130 1.22606 0.96434 1.02518 0.93432 1.22771 0.94162 0.99990 0.99696 1.22546 0.92972 0.99528 0.90056 1.22934 0.90911 0.86715 1.02800 1.88168 1.46084 1.50549 1.42620 0.93576 0.77829 0.95347 0.94695 0.88075 0.90405 0.88080 0.87532 0.88105 0.88514 0.88318 0.88477 0.90298 0.88997 0.87729 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.86 29.55 -169.99 -5.02 17.83 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.25 5.50 -59.91 -0.33 -19.58 16 10 C 0.16 3.43 5.96 -4.04 -0.02 3.40 16 11 C 0.07 1.30 2.86 -26.58 -0.08 1.22 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.09 1.28 5.93 -3.47 -0.02 1.26 16 14 N -0.61 -8.01 3.02 -172.18 -0.52 -8.53 16 15 C 0.54 7.42 7.50 -10.99 -0.08 7.33 16 16 O -0.53 -9.12 15.72 5.55 0.09 -9.03 16 17 C -0.14 -1.43 5.18 -91.77 -0.48 -1.91 16 18 H 0.13 1.00 6.54 -51.93 -0.34 0.66 16 19 C -0.10 -0.82 10.23 -26.74 -0.27 -1.10 16 20 C -0.20 -1.99 5.05 -154.52 -0.78 -2.77 16 21 C -0.11 -1.10 10.16 -26.74 -0.27 -1.37 16 22 C -0.13 -1.01 10.53 -26.74 -0.28 -1.29 16 23 C 0.07 0.74 6.55 -3.53 -0.02 0.72 16 24 C 0.04 0.56 6.99 37.31 0.26 0.82 16 25 O -0.36 -6.33 10.14 -35.23 -0.36 -6.69 16 26 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.39 10.92 7.55 -40.82 -0.31 10.61 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.58 7.09 -51.93 -0.37 1.21 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.67 5.59 -51.93 -0.29 0.38 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -34.65 339.49 -8.95 -43.60 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.35 Total: 6.72 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.30 Total: -1.25 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.12 Total: -56.31 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.27 Total: -15.71 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.65 -8.95 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717180645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.436 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds