Wall clock time and date at job start Tue Mar 31 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99714 * 2 1 4 4 H 1.48510 * 109.46623 * 269.99539 * 3 2 1 5 5 H 1.48500 * 109.47457 * 29.99379 * 3 2 1 6 6 H 1.48502 * 109.47053 * 150.00009 * 3 2 1 7 7 C 1.38812 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99526 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99928 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47129 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.51102 * 60.00374 * 11 10 9 13 13 C 1.53300 * 109.51126 * 180.10382 * 11 10 9 14 14 N 1.47263 * 108.32670 * 172.23406 * 13 11 10 15 15 C 1.34772 * 120.95916 * 129.46524 * 14 13 11 16 16 O 1.21283 * 120.00043 * 0.03282 * 15 14 13 17 17 C 1.50702 * 120.00026 * 180.02562 * 15 14 13 18 18 H 1.08998 * 115.55120 * 34.28779 * 17 15 14 19 19 C 1.52995 * 117.49923 * 248.60899 * 17 15 14 20 20 C 1.52986 * 60.00444 * 252.51460 * 19 17 15 21 21 C 1.52992 * 138.59221 * 130.88818 * 20 19 17 22 22 C 1.52992 * 138.59256 * 229.11198 * 20 19 17 23 23 C 1.47152 * 118.06134 * 309.49293 * 14 13 11 24 24 C 1.53299 * 108.38544 * 50.53095 * 23 14 13 25 25 O 1.42961 * 109.51369 * 299.90321 * 11 10 9 26 26 H 0.96997 * 119.99908 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00592 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.46890 * 60.00584 * 10 9 7 29 29 H 1.08993 * 109.47248 * 300.00406 * 10 9 7 30 30 H 1.08995 * 109.67999 * 292.00054 * 13 11 10 31 31 H 1.09004 * 109.67971 * 52.55520 * 13 11 10 32 32 H 1.08997 * 117.50070 * 0.02562 * 19 17 15 33 33 H 1.09000 * 117.49718 * 145.00072 * 19 17 15 34 34 H 1.09001 * 117.50407 * 238.39316 * 21 20 19 35 35 H 1.08997 * 117.49617 * 23.41346 * 21 20 19 36 36 H 1.09002 * 117.49895 * 336.59505 * 22 20 19 37 37 H 1.09000 * 117.49872 * 121.59060 * 22 20 19 38 38 H 1.09000 * 109.68168 * 290.81098 * 23 14 13 39 39 H 1.08998 * 109.71550 * 170.27358 * 23 14 13 40 40 H 1.09003 * 109.51516 * 187.77653 * 24 23 14 41 41 H 1.08998 * 109.51002 * 67.62195 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6567 0.0016 11 6 1.0640 -4.8197 0.0022 12 1 0.4367 -4.7628 -0.8873 13 6 1.8296 -6.1478 0.0049 14 7 0.8607 -7.2404 0.1943 15 6 0.8475 -8.3062 -0.6305 16 8 1.6417 -8.3755 -1.5445 17 6 -0.1540 -9.4119 -0.4170 18 1 -1.1279 -9.0980 -0.0414 19 6 0.3795 -10.7679 0.0490 20 6 -0.1182 -10.5944 -1.3872 21 6 0.3553 -10.8972 -2.8101 22 6 -1.0536 -11.3004 -2.3707 23 6 -0.0929 -7.1343 1.3100 24 6 -0.7639 -5.7576 1.2432 25 8 0.2436 -4.7458 1.1706 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0016 28 1 2.6855 -3.7141 0.8912 29 1 2.6842 -3.7148 -0.8887 30 1 2.3470 -6.2751 -0.9460 31 1 2.5528 -6.1530 0.8205 32 1 1.4547 -10.8603 0.2017 33 1 -0.2434 -11.3463 0.7314 34 1 0.4467 -10.0579 -3.4995 35 1 1.0896 -11.6926 -2.9376 36 1 -1.2463 -12.3610 -2.2090 37 1 -1.8895 -10.7264 -2.7706 38 1 0.4368 -7.2389 2.2569 39 1 -0.8483 -7.9154 1.2237 40 1 -1.3702 -5.6043 2.1361 41 1 -1.3979 -5.7041 0.3582 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717180645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:14 Heat of formation + Delta-G solvation = -18.733079 kcal Electronic energy + Delta-G solvation = -21917.434323 eV Core-core repulsion = 18606.266264 eV Total energy + Delta-G solvation = -3311.168058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.58035 -39.92470 -38.31212 -36.68164 -35.75235 -34.04006 -33.50898 -31.87427 -29.36981 -27.66386 -25.37373 -24.60563 -23.59524 -23.29685 -22.20418 -20.89376 -19.54397 -19.23731 -18.48629 -17.72713 -17.09323 -16.70542 -16.60881 -16.01631 -15.92958 -15.72737 -15.59039 -15.36464 -15.02523 -14.53598 -14.32974 -14.05668 -13.49906 -13.41803 -13.03808 -12.81453 -12.69705 -12.57692 -12.37189 -12.28492 -12.06692 -11.89486 -11.64412 -11.22610 -11.18096 -11.06118 -10.97043 -10.95837 -10.72299 -9.65526 -9.02654 -7.95064 -5.24987 1.35388 1.46989 1.49673 1.58169 1.70392 2.55526 2.69376 2.71878 2.77860 3.29136 3.38475 3.45342 3.57502 3.79038 3.87745 3.94688 3.99980 4.04581 4.16852 4.32488 4.37729 4.42179 4.50589 4.59201 4.64816 4.72069 4.74717 4.77269 4.80785 4.86455 4.92787 5.00074 5.01694 5.05874 5.24662 5.26758 5.47053 6.20698 6.25142 6.27883 7.03143 7.32353 8.05668 8.31140 9.28696 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.003176 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.491115 B = 8814.446818 C = 9037.495303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.160 3.840 11 C 0.089 3.911 12 H 0.045 0.955 13 C 0.095 3.905 14 N -0.612 5.612 15 C 0.536 3.464 16 O -0.579 6.579 17 C -0.149 4.149 18 H 0.152 0.848 19 C -0.078 4.078 20 C -0.227 4.227 21 C -0.136 4.136 22 C -0.104 4.104 23 C 0.077 3.923 24 C 0.036 3.964 25 O -0.387 6.387 26 H 0.252 0.748 27 H 0.375 0.625 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 -26.066 2.362 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.033 3.967 11 C 0.030 3.970 12 H 0.063 0.937 13 C -0.028 4.028 14 N -0.345 5.345 15 C 0.326 3.674 16 O -0.458 6.458 17 C -0.170 4.170 18 H 0.169 0.831 19 C -0.115 4.115 20 C -0.228 4.228 21 C -0.173 4.173 22 C -0.140 4.140 23 C -0.045 4.045 24 C -0.041 4.041 25 O -0.306 6.306 26 H 0.060 0.940 27 H 0.207 0.793 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.256 -25.867 2.041 26.150 hybrid contribution 0.104 1.336 -0.397 1.398 sum -3.153 -24.530 1.644 24.787 Atomic orbital electron populations 1.69843 1.06726 1.26123 1.59304 1.25636 0.96472 1.01277 1.03491 0.85074 0.77679 0.79094 0.77484 1.21292 1.22000 1.19310 1.19672 0.91597 0.85231 1.41567 0.90421 1.42400 1.05714 1.00805 1.89370 1.20768 0.93077 0.84016 0.98839 1.22433 0.92326 0.94166 0.88068 0.93687 1.22081 0.91771 0.85070 1.03908 1.48240 1.35376 1.19920 1.30962 1.20407 0.84104 0.82505 0.80350 1.90670 1.42726 1.79287 1.33137 1.22045 1.00232 0.88241 1.06458 0.83054 1.22773 1.01651 0.93560 0.93545 1.21457 1.09586 1.01024 0.90707 1.22596 0.98708 1.02316 0.93711 1.22851 0.92797 1.01105 0.97270 1.22725 0.93228 0.99038 0.89487 1.23268 0.90126 0.86899 1.03848 1.88103 1.47288 1.53036 1.42197 0.93955 0.79268 0.95072 0.94109 0.89302 0.89500 0.89084 0.84130 0.90551 0.87934 0.86001 0.88037 0.88919 0.85207 0.85278 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.74 -40.10 5.50 -343.45 -1.89 -41.98 16 10 C 0.16 6.84 5.96 86.38 0.51 7.35 16 11 C 0.09 3.18 2.86 30.69 0.09 3.27 16 12 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 13 C 0.10 2.84 5.93 86.33 0.51 3.35 16 14 N -0.61 -15.30 3.02 -817.06 -2.47 -17.77 16 15 C 0.54 14.17 7.50 87.66 0.66 14.82 16 16 O -0.58 -20.16 15.72 -3.04 -0.05 -20.20 16 17 C -0.15 -2.62 5.18 -11.54 -0.06 -2.68 16 18 H 0.15 1.78 6.54 -2.39 -0.02 1.76 16 19 C -0.08 -1.05 10.23 30.59 0.31 -0.74 16 20 C -0.23 -4.00 5.05 -52.19 -0.26 -4.26 16 21 C -0.14 -2.61 10.16 30.59 0.31 -2.30 16 22 C -0.10 -1.37 10.53 30.59 0.32 -1.05 16 23 C 0.08 1.36 6.55 86.36 0.57 1.92 16 24 C 0.04 0.83 6.99 72.08 0.50 1.34 16 25 O -0.39 -13.69 10.14 -148.98 -1.51 -15.20 16 26 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.38 21.82 7.55 -92.71 -0.70 21.12 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.86 7.09 -2.39 -0.02 2.84 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 1.32 5.59 -2.39 -0.01 1.31 16 40 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -76.83 339.49 1.49 -75.33 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.33 Total: 28.19 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.77 Total: 3.28 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.07 Total: -120.69 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.56 Total: -35.40 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -76.83 1.49 -75.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717180645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.599 kcal (2) G-P(sol) polarization free energy of solvation -76.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds