Wall clock time and date at job start Tue Mar 31 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47351 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.51515 * 60.10406 * 11 10 9 13 13 C 1.53300 * 109.51596 * 180.25565 * 11 10 9 14 14 N 1.47149 * 108.38599 * 172.22527 * 13 11 10 15 15 C 1.34778 * 120.97919 * 129.44479 * 14 13 11 16 16 O 1.21276 * 120.00314 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99863 * 180.02562 * 15 14 13 18 18 H 1.08998 * 115.54581 * 325.66585 * 17 15 14 19 19 C 1.52999 * 117.49986 * 111.37668 * 17 15 14 20 20 C 1.52995 * 117.50018 * 179.97438 * 17 15 14 21 21 C 1.52992 * 138.58953 * 121.61206 * 20 17 15 22 22 C 1.52992 * 138.58535 * 23.39982 * 20 17 15 23 23 C 1.47145 * 118.03813 * 309.46650 * 14 13 11 24 24 C 1.53295 * 108.38668 * 50.53571 * 23 14 13 25 25 O 1.42960 * 109.51330 * 300.00204 * 11 10 9 26 26 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46981 * 300.00453 * 10 9 7 29 29 H 1.09002 * 109.46732 * 60.00394 * 10 9 7 30 30 H 1.08997 * 109.67715 * 291.95413 * 13 11 10 31 31 H 1.08997 * 109.67773 * 52.50508 * 13 11 10 32 32 H 1.09001 * 117.49897 * 214.97550 * 19 17 15 33 33 H 1.08997 * 117.49822 * 0.02562 * 19 17 15 34 34 H 1.09001 * 117.49994 * 336.59772 * 21 20 17 35 35 H 1.09004 * 117.49799 * 121.62127 * 21 20 17 36 36 H 1.09007 * 117.49810 * 238.38279 * 22 20 17 37 37 H 1.09003 * 117.50313 * 23.40349 * 22 20 17 38 38 H 1.09002 * 109.68347 * 290.81304 * 23 14 13 39 39 H 1.09007 * 109.71583 * 170.27679 * 23 14 13 40 40 H 1.08997 * 109.51477 * 187.77489 * 24 23 14 41 41 H 1.08998 * 109.55830 * 67.64529 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8196 0.0022 12 1 0.4378 -4.7639 -0.8883 13 6 1.8296 -6.1478 0.0087 14 7 0.8621 -7.2402 0.1981 15 6 0.8508 -8.3074 -0.6250 16 8 1.6461 -8.3776 -1.5378 17 6 -0.1502 -9.4135 -0.4111 18 1 -0.4069 -9.6206 0.6278 19 6 -1.2527 -9.5809 -1.4586 20 6 -0.1126 -10.5974 -1.3793 21 6 0.0697 -12.1156 -1.3289 22 6 0.8833 -11.2798 -2.3191 23 6 -0.0930 -7.1329 1.3123 24 6 -0.7649 -5.7568 1.2424 25 8 0.2420 -4.7445 1.1695 26 1 -0.4849 -0.8401 0.0004 27 1 0.3557 -2.3881 0.0016 28 1 2.6842 -3.7148 -0.8888 29 1 2.6854 -3.7140 0.8912 30 1 2.3481 -6.2771 -0.9413 31 1 2.5516 -6.1513 0.8252 32 1 -2.2351 -9.8983 -1.1090 33 1 -1.2537 -8.8914 -2.3028 34 1 0.5960 -12.5311 -0.4695 35 1 -0.7335 -12.7326 -1.7320 36 1 0.6155 -11.3470 -3.3736 37 1 1.9449 -11.1455 -2.1112 38 1 0.4356 -7.2356 2.2601 39 1 -0.8477 -7.9147 1.2264 40 1 -1.3724 -5.6025 2.1341 41 1 -1.3983 -5.7047 0.3569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717180646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:17 Heat of formation + Delta-G solvation = 3.905956 kcal Electronic energy + Delta-G solvation = -21979.167202 eV Core-core repulsion = 18668.980845 eV Total energy + Delta-G solvation = -3310.186356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59709 -38.91647 -37.45367 -35.20103 -34.52313 -33.00966 -32.26866 -30.05293 -28.19424 -25.96760 -23.81871 -23.45261 -22.68059 -22.32203 -21.01179 -20.05859 -18.67552 -17.62606 -17.21086 -16.54184 -15.99810 -15.54849 -15.33214 -15.26959 -15.10416 -14.59589 -14.43415 -13.71995 -13.63973 -13.33026 -13.06644 -12.67721 -12.55391 -12.21043 -11.96626 -11.76032 -11.60915 -11.12831 -10.67577 -10.57309 -10.52679 -10.49052 -10.41087 -10.30006 -10.01646 -9.99958 -9.77643 -9.15525 -8.84894 -8.59024 -6.94714 -6.05534 -3.04277 2.28707 2.62501 3.39368 3.44227 3.55051 3.62196 3.71608 3.86342 3.94843 4.27941 4.44825 4.60927 4.67207 4.74494 4.85423 4.98904 5.05273 5.11289 5.19736 5.25779 5.31171 5.32770 5.36342 5.43093 5.58832 5.61749 5.64610 5.65466 5.66126 5.81026 5.88191 5.88900 6.08528 6.26963 6.49369 6.62738 7.20092 7.37294 7.85688 8.01560 8.82034 9.28768 10.15296 10.30780 11.43617 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.003186 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.313884 B = 8787.577538 C = 9058.369298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.046 4.046 3 Si 1.087 2.913 4 H -0.295 1.295 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.331 4.331 8 H 0.065 0.935 9 N -0.737 5.737 10 C 0.169 3.831 11 C 0.073 3.927 12 H 0.061 0.939 13 C 0.086 3.914 14 N -0.611 5.611 15 C 0.543 3.457 16 O -0.533 6.533 17 C -0.143 4.143 18 H 0.125 0.875 19 C -0.099 4.099 20 C -0.202 4.202 21 C -0.129 4.129 22 C -0.113 4.113 23 C 0.072 3.928 24 C 0.045 3.955 25 O -0.359 6.359 26 H 0.256 0.744 27 H 0.371 0.629 28 H 0.036 0.964 29 H 0.029 0.971 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 -24.272 0.843 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.918 3.082 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.462 4.462 8 H 0.083 0.917 9 N -0.383 5.383 10 C 0.041 3.959 11 C 0.014 3.986 12 H 0.079 0.921 13 C -0.036 4.036 14 N -0.345 5.345 15 C 0.331 3.669 16 O -0.410 6.410 17 C -0.163 4.163 18 H 0.142 0.858 19 C -0.136 4.136 20 C -0.202 4.202 21 C -0.166 4.166 22 C -0.150 4.150 23 C -0.051 4.051 24 C -0.033 4.033 25 O -0.277 6.277 26 H 0.067 0.933 27 H 0.204 0.796 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.560 -22.504 0.493 22.654 hybrid contribution -0.210 -1.861 0.083 1.875 sum -2.770 -24.365 0.576 24.529 Atomic orbital electron populations 1.70794 1.06054 1.28536 1.53690 1.25786 0.97097 1.00977 1.00509 0.83132 0.73524 0.74970 0.76565 1.22125 1.22046 1.22013 1.20097 0.92053 0.85734 1.48317 0.91662 1.42216 1.05073 1.00445 1.90598 1.20559 0.92252 0.84195 0.98895 1.22813 0.92964 0.94435 0.88367 0.92068 1.22321 0.91576 0.85534 1.04202 1.48094 1.35336 1.20599 1.30510 1.19697 0.84060 0.81849 0.81251 1.90691 1.40414 1.78416 1.31432 1.21971 1.00848 0.95867 0.97657 0.85756 1.22669 0.92567 0.99311 0.99084 1.21155 1.03186 0.91614 1.04284 1.22769 1.02475 0.89547 1.01805 1.22607 0.96942 0.99632 0.95819 1.22527 0.92939 0.99595 0.90016 1.22929 0.90827 0.86696 1.02831 1.88157 1.46155 1.50585 1.42805 0.93263 0.79588 0.94607 0.95276 0.88046 0.90400 0.87434 0.87975 0.88547 0.88282 0.88456 0.88173 0.90392 0.88874 0.87705 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.08 13.70 55.49 0.76 -29.32 16 2 C -0.05 -1.39 5.50 -17.43 -0.10 -1.48 16 3 Si 1.09 26.69 29.92 -169.99 -5.09 21.60 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.33 -9.71 9.99 -15.06 -0.15 -9.86 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.74 -19.60 5.49 -59.91 -0.33 -19.93 16 10 C 0.17 3.60 5.96 -4.04 -0.02 3.57 16 11 C 0.07 1.28 2.87 -26.58 -0.08 1.20 16 12 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.09 1.29 5.93 -3.53 -0.02 1.27 16 14 N -0.61 -7.99 3.02 -172.28 -0.52 -8.51 16 15 C 0.54 7.39 7.49 -10.98 -0.08 7.30 16 16 O -0.53 -9.08 15.71 5.56 0.09 -9.00 16 17 C -0.14 -1.42 4.95 -91.77 -0.45 -1.88 16 18 H 0.12 0.95 6.91 -51.93 -0.36 0.59 16 19 C -0.10 -0.87 10.23 -26.76 -0.27 -1.14 16 20 C -0.20 -1.97 5.05 -154.55 -0.78 -2.75 16 21 C -0.13 -0.97 10.53 -26.74 -0.28 -1.25 16 22 C -0.11 -1.08 10.16 -26.73 -0.27 -1.35 16 23 C 0.07 0.74 6.48 -3.54 -0.02 0.71 16 24 C 0.05 0.56 6.99 37.31 0.26 0.82 16 25 O -0.36 -6.31 10.13 -35.23 -0.36 -6.67 16 26 H 0.26 8.08 6.77 -40.82 -0.28 7.80 16 27 H 0.37 10.16 6.38 -40.82 -0.26 9.90 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 1.59 7.08 -51.93 -0.37 1.22 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.67 5.83 -51.93 -0.30 0.37 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -35.73 338.06 -8.89 -44.62 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.27 Total: 6.94 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.27 Total: -4.83 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.09 Total: -57.76 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.27 Total: -15.67 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.09 Total: 21.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.73 -8.89 -44.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717180646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.525 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds