Wall clock time and date at job start Tue Mar 31 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99608 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00215 * 3 2 1 7 7 C 1.38811 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99820 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.52991 * 109.47351 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.51515 * 60.10406 * 11 10 9 13 13 C 1.53300 * 109.51596 * 180.25565 * 11 10 9 14 14 N 1.47149 * 108.38599 * 172.22527 * 13 11 10 15 15 C 1.34778 * 120.97919 * 129.44479 * 14 13 11 16 16 O 1.21276 * 120.00314 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99863 * 180.02562 * 15 14 13 18 18 H 1.08998 * 115.54581 * 325.66585 * 17 15 14 19 19 C 1.52999 * 117.49986 * 111.37668 * 17 15 14 20 20 C 1.52995 * 117.50018 * 179.97438 * 17 15 14 21 21 C 1.52992 * 138.58953 * 121.61206 * 20 17 15 22 22 C 1.52992 * 138.58535 * 23.39982 * 20 17 15 23 23 C 1.47145 * 118.03813 * 309.46650 * 14 13 11 24 24 C 1.53295 * 108.38668 * 50.53571 * 23 14 13 25 25 O 1.42960 * 109.51330 * 300.00204 * 11 10 9 26 26 H 0.97000 * 119.99517 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00534 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46981 * 300.00453 * 10 9 7 29 29 H 1.09002 * 109.46732 * 60.00394 * 10 9 7 30 30 H 1.08997 * 109.67715 * 291.95413 * 13 11 10 31 31 H 1.08997 * 109.67773 * 52.50508 * 13 11 10 32 32 H 1.09001 * 117.49897 * 214.97550 * 19 17 15 33 33 H 1.08997 * 117.49822 * 0.02562 * 19 17 15 34 34 H 1.09001 * 117.49994 * 336.59772 * 21 20 17 35 35 H 1.09004 * 117.49799 * 121.62127 * 21 20 17 36 36 H 1.09007 * 117.49810 * 238.38279 * 22 20 17 37 37 H 1.09003 * 117.50313 * 23.40349 * 22 20 17 38 38 H 1.09002 * 109.68347 * 290.81304 * 23 14 13 39 39 H 1.09007 * 109.71583 * 170.27679 * 23 14 13 40 40 H 1.08997 * 109.51477 * 187.77489 * 24 23 14 41 41 H 1.08998 * 109.55830 * 67.64529 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8196 0.0022 12 1 0.4378 -4.7639 -0.8883 13 6 1.8296 -6.1478 0.0087 14 7 0.8621 -7.2402 0.1981 15 6 0.8508 -8.3074 -0.6250 16 8 1.6461 -8.3776 -1.5378 17 6 -0.1502 -9.4135 -0.4111 18 1 -0.4069 -9.6206 0.6278 19 6 -1.2527 -9.5809 -1.4586 20 6 -0.1126 -10.5974 -1.3793 21 6 0.0697 -12.1156 -1.3289 22 6 0.8833 -11.2798 -2.3191 23 6 -0.0930 -7.1329 1.3123 24 6 -0.7649 -5.7568 1.2424 25 8 0.2420 -4.7445 1.1695 26 1 -0.4849 -0.8401 0.0004 27 1 0.3557 -2.3881 0.0016 28 1 2.6842 -3.7148 -0.8888 29 1 2.6854 -3.7140 0.8912 30 1 2.3481 -6.2771 -0.9413 31 1 2.5516 -6.1513 0.8252 32 1 -2.2351 -9.8983 -1.1090 33 1 -1.2537 -8.8914 -2.3028 34 1 0.5960 -12.5311 -0.4695 35 1 -0.7335 -12.7326 -1.7320 36 1 0.6155 -11.3470 -3.3736 37 1 1.9449 -11.1455 -2.1112 38 1 0.4356 -7.2356 2.2601 39 1 -0.8477 -7.9147 1.2264 40 1 -1.3724 -5.6025 2.1341 41 1 -1.3983 -5.7047 0.3569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717180646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:17 Heat of formation + Delta-G solvation = -20.523348 kcal Electronic energy + Delta-G solvation = -21980.226536 eV Core-core repulsion = 18668.980845 eV Total energy + Delta-G solvation = -3311.245690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64414 -39.99801 -38.36126 -36.97971 -35.85527 -34.16801 -33.54557 -31.75093 -29.39125 -27.50180 -25.36279 -24.64431 -23.80973 -23.31254 -22.36176 -20.89721 -19.57581 -19.42255 -18.55847 -17.80714 -17.17584 -16.89857 -16.54298 -16.26828 -15.91495 -15.73882 -15.62824 -15.50533 -15.11031 -14.73616 -14.46371 -14.11957 -13.58905 -13.39574 -12.84046 -12.76017 -12.69619 -12.62296 -12.39011 -12.30782 -11.86757 -11.80687 -11.35361 -11.27728 -11.20490 -11.10309 -10.99321 -10.98975 -10.76639 -9.72180 -9.15197 -8.43065 -5.36504 1.30785 1.57703 1.63559 1.70218 1.82252 2.63049 2.67144 2.69993 2.73795 3.26352 3.37790 3.39235 3.49889 3.74188 3.78457 3.87606 3.96124 3.98502 4.06144 4.21804 4.29258 4.35849 4.44559 4.54471 4.56587 4.65467 4.72011 4.74190 4.76808 4.79317 4.83023 4.94757 4.96125 4.99280 5.19834 5.24644 5.54555 6.12566 6.21019 6.46757 6.98058 7.05750 7.95710 8.07690 9.09102 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.003186 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.313884 B = 8787.577538 C = 9058.369298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.105 4.105 3 Si 1.136 2.864 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.338 4.338 8 H 0.068 0.932 9 N -0.751 5.751 10 C 0.166 3.834 11 C 0.090 3.910 12 H 0.047 0.953 13 C 0.096 3.904 14 N -0.612 5.612 15 C 0.536 3.464 16 O -0.578 6.578 17 C -0.145 4.145 18 H 0.157 0.843 19 C -0.087 4.087 20 C -0.225 4.225 21 C -0.100 4.100 22 C -0.137 4.137 23 C 0.076 3.924 24 C 0.036 3.964 25 O -0.390 6.390 26 H 0.244 0.756 27 H 0.363 0.637 28 H 0.040 0.960 29 H 0.029 0.971 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -25.973 2.006 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.296 4.296 3 Si 0.961 3.039 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.469 4.469 8 H 0.086 0.914 9 N -0.396 5.396 10 C 0.039 3.961 11 C 0.031 3.969 12 H 0.065 0.935 13 C -0.028 4.028 14 N -0.345 5.345 15 C 0.326 3.674 16 O -0.457 6.457 17 C -0.166 4.166 18 H 0.174 0.826 19 C -0.124 4.124 20 C -0.226 4.226 21 C -0.136 4.136 22 C -0.174 4.174 23 C -0.045 4.045 24 C -0.040 4.040 25 O -0.309 6.309 26 H 0.054 0.946 27 H 0.195 0.805 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.159 0.841 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.278 -24.259 1.677 24.537 hybrid contribution 0.016 -1.405 -0.287 1.435 sum -3.262 -25.664 1.389 25.908 Atomic orbital electron populations 1.70919 1.07179 1.27881 1.56141 1.27339 0.97170 1.04813 1.00285 0.82517 0.73657 0.71118 0.76651 1.19609 1.21579 1.21525 1.20472 0.92440 0.86980 1.47003 0.91397 1.42408 1.04925 1.01624 1.90654 1.20690 0.93032 0.83706 0.98709 1.22425 0.92267 0.94119 0.88133 0.93525 1.22028 0.91798 0.85101 1.03876 1.48202 1.35296 1.19795 1.31239 1.20449 0.84136 0.82459 0.80312 1.90670 1.42369 1.79419 1.33279 1.22035 1.00369 0.94563 0.99590 0.82593 1.22764 0.93577 0.98200 0.97901 1.21436 1.03628 0.93084 1.04460 1.22864 1.01788 0.88167 1.00796 1.22615 0.96220 1.01982 0.96606 1.22721 0.93187 0.99246 0.89392 1.23270 0.90017 0.86758 1.03997 1.88093 1.47359 1.53089 1.42321 0.94611 0.80532 0.94274 0.95289 0.89313 0.89668 0.84141 0.89745 0.87540 0.86169 0.88271 0.90163 0.89080 0.85017 0.85210 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.97 13.70 21.65 0.30 -62.67 16 2 C -0.11 -6.33 5.50 84.86 0.47 -5.87 16 3 Si 1.14 53.53 29.92 68.60 2.05 55.59 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.34 -20.00 9.99 84.03 0.84 -19.16 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.75 -40.82 5.49 -343.46 -1.89 -42.71 16 10 C 0.17 7.18 5.96 86.38 0.51 7.70 16 11 C 0.09 3.19 2.87 30.69 0.09 3.27 16 12 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 13 C 0.10 2.87 5.93 86.36 0.51 3.38 16 14 N -0.61 -15.23 3.02 -817.36 -2.47 -17.70 16 15 C 0.54 14.09 7.49 87.66 0.66 14.75 16 16 O -0.58 -20.10 15.71 -3.02 -0.05 -20.15 16 17 C -0.15 -2.51 4.95 -11.54 -0.06 -2.57 16 18 H 0.16 1.66 6.91 -2.39 -0.02 1.64 16 19 C -0.09 -1.30 10.23 30.58 0.31 -0.98 16 20 C -0.23 -3.93 5.05 -52.21 -0.26 -4.19 16 21 C -0.10 -1.22 10.53 30.59 0.32 -0.90 16 22 C -0.14 -2.56 10.16 30.59 0.31 -2.25 16 23 C 0.08 1.33 6.48 86.36 0.56 1.89 16 24 C 0.04 0.83 6.99 72.08 0.50 1.34 16 25 O -0.39 -13.61 10.13 -148.98 -1.51 -15.12 16 26 H 0.24 15.83 6.77 -92.71 -0.63 15.20 16 27 H 0.36 20.55 6.38 -92.71 -0.59 19.96 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.88 7.08 -2.39 -0.02 2.86 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.13 1.30 5.83 -2.38 -0.01 1.28 16 40 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -79.34 338.06 1.78 -77.55 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.58 Total: 28.81 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.77 Total: -3.60 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -4.06 Total: -123.08 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -1.56 Total: -35.27 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.05 Total: 55.59 kcal Total: -79.34 1.78 -77.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717180646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.030 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds