Wall clock time and date at job start Tue Mar 31 2020 02:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48497 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 300.00078 * 3 2 1 6 6 H 1.48501 * 109.46878 * 59.99834 * 3 2 1 7 7 C 1.38809 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00216 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47393 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46566 * 64.99985 * 11 10 9 13 13 N 1.46495 * 109.47212 * 305.00213 * 11 10 9 14 14 C 1.34779 * 120.00041 * 154.99449 * 13 11 10 15 15 O 1.21279 * 119.99981 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99893 * 179.97438 * 14 13 11 17 17 C 1.53005 * 119.81207 * 250.23532 * 16 14 13 18 18 C 1.53006 * 60.65272 * 247.69098 * 17 16 14 19 19 H 1.09000 * 119.80386 * 112.30870 * 18 17 16 20 20 C 1.54475 * 118.06445 * 269.58725 * 18 17 16 21 21 O 1.44430 * 104.80245 * 38.87392 * 20 18 17 22 22 C 1.44425 * 105.27508 * 40.51025 * 21 20 18 23 23 C 1.52998 * 109.47026 * 184.99940 * 11 10 9 24 24 C 1.52998 * 117.49849 * 248.74530 * 23 11 10 25 25 C 1.53006 * 117.49630 * 180.09057 * 23 11 10 26 26 H 0.97002 * 120.00113 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99998 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.46899 * 59.99528 * 10 9 7 29 29 H 1.09001 * 109.47035 * 300.00352 * 10 9 7 30 30 H 0.97003 * 120.00409 * 334.99833 * 13 11 10 31 31 H 1.08991 * 117.43340 * 140.01539 * 17 16 14 32 32 H 1.09001 * 117.42666 * 355.36503 * 17 16 14 33 33 H 1.08996 * 110.37331 * 157.70209 * 20 18 17 34 34 H 1.08997 * 110.37540 * 280.04093 * 20 18 17 35 35 H 1.08994 * 110.37259 * 200.65452 * 22 21 20 36 36 H 1.09001 * 110.36748 * 78.31921 * 22 21 20 37 37 H 1.08994 * 115.54882 * 34.42096 * 23 11 10 38 38 H 1.09006 * 117.49907 * 0.02562 * 24 23 11 39 39 H 1.08996 * 117.49940 * 145.02151 * 24 23 11 40 40 H 1.08998 * 117.49980 * 214.98033 * 25 23 11 41 41 H 1.09001 * 117.49404 * 359.97431 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8198 -0.0022 12 1 0.4979 -4.8134 -0.9339 13 7 0.1438 -4.6764 1.1288 14 6 -1.0807 -5.2371 1.0768 15 8 -1.4208 -5.8608 0.0938 16 6 -2.0268 -5.0901 2.2405 17 6 -2.3545 -6.3039 3.1125 18 6 -3.4483 -5.6955 2.2324 19 1 -3.8376 -6.2592 1.3846 20 6 -4.3334 -4.5835 2.8377 21 8 -3.4303 -3.7850 3.6331 22 6 -2.2212 -3.6838 2.8497 23 6 1.8245 -6.1412 0.1235 24 6 1.8345 -7.0691 -1.0930 25 6 1.0019 -7.4312 0.1393 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0016 28 1 2.6840 -3.7149 0.8888 29 1 2.6854 -3.7142 -0.8911 30 1 0.4159 -4.1778 1.9152 31 1 -2.4287 -6.1441 4.1881 32 1 -1.9429 -7.2663 2.8085 33 1 -4.7776 -3.9793 2.0466 34 1 -5.1107 -5.0174 3.4667 35 1 -1.3760 -3.4266 3.4879 36 1 -2.3416 -2.9417 2.0605 37 1 2.7230 -6.1096 0.7397 38 1 1.2994 -6.7379 -1.9830 39 1 2.7394 -7.6482 -1.2768 40 1 1.3594 -8.2484 0.7658 41 1 -0.0813 -7.3383 0.0606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723302968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:38 Heat of formation + Delta-G solvation = -8.202061 kcal Electronic energy + Delta-G solvation = -22652.271182 eV Core-core repulsion = 19341.559783 eV Total energy + Delta-G solvation = -3310.711399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84930 -39.17520 -37.06861 -35.04646 -34.33499 -33.41667 -31.16608 -29.07491 -27.86115 -25.85266 -24.18501 -23.11378 -22.11530 -21.52280 -20.80517 -20.08686 -19.48310 -17.63451 -17.06276 -16.30270 -15.81058 -15.48420 -15.10679 -14.95761 -14.92639 -14.30361 -13.94982 -13.51218 -13.19763 -12.92716 -12.81310 -12.79854 -12.23688 -11.94246 -11.70966 -11.54074 -11.23851 -11.07641 -10.92812 -10.85218 -10.61685 -10.26033 -10.17832 -10.08834 -9.94451 -9.72964 -9.61616 -9.47097 -8.95259 -8.66740 -6.99903 -5.81717 -3.11561 2.66013 3.23398 3.40427 3.46236 3.48055 3.48540 3.84537 4.09863 4.46395 4.50979 4.52817 4.79485 4.83868 4.91631 5.13335 5.14962 5.25808 5.41893 5.44673 5.51602 5.55594 5.59367 5.66431 5.69755 5.76617 5.82328 5.87492 5.88769 5.99297 6.05399 6.19520 6.33615 6.45696 6.48395 6.64104 6.65862 6.90586 7.65771 7.83074 8.35984 8.48914 9.48163 10.02937 10.38578 11.40619 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.006111 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.303167 B = 4580.768104 C = 6436.743895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.088 0.912 13 N -0.699 5.699 14 C 0.566 3.434 15 O -0.544 6.544 16 C -0.210 4.210 17 C -0.107 4.107 18 C -0.165 4.165 19 H 0.131 0.869 20 C 0.070 3.930 21 O -0.370 6.370 22 C 0.085 3.915 23 C -0.163 4.163 24 C -0.171 4.171 25 C -0.185 4.185 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.025 0.975 29 H 0.036 0.964 30 H 0.405 0.595 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -14.280 5.823 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.106 0.894 13 N -0.348 5.348 14 C 0.352 3.648 15 O -0.423 6.423 16 C -0.213 4.213 17 C -0.144 4.144 18 C -0.184 4.184 19 H 0.149 0.851 20 C -0.006 4.006 21 O -0.288 6.288 22 C 0.008 3.992 23 C -0.182 4.182 24 C -0.208 4.208 25 C -0.222 4.222 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.240 0.760 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.657 -14.460 5.313 15.834 hybrid contribution 0.487 1.136 0.019 1.236 sum -3.170 -13.324 5.333 14.698 Atomic orbital electron populations 1.69670 1.05087 1.25618 1.57477 1.24743 0.95521 0.97700 1.02787 0.86121 0.78781 0.84078 0.77201 1.20561 1.21871 1.21835 1.19252 0.91071 0.83990 1.43027 0.91064 1.42345 1.05954 0.99721 1.89614 1.20920 0.93004 0.85058 0.99030 1.20826 0.90142 0.92846 0.89829 0.89442 1.45872 1.14097 1.54061 1.20734 1.18876 0.81459 0.78334 0.86109 1.90604 1.76402 1.42228 1.33063 1.23165 1.00090 0.96367 1.01681 1.22870 0.98798 0.94786 0.97937 1.24155 0.89478 1.01376 1.03382 0.85088 1.22961 0.92541 0.89917 0.95222 1.89157 1.25399 1.72643 1.41640 1.22875 0.88084 0.92460 0.95774 1.22652 1.01487 0.91420 1.02675 1.22895 1.02018 1.03151 0.92777 1.23251 1.00595 0.97503 1.00883 0.93515 0.78067 0.95687 0.94634 0.76011 0.87651 0.87526 0.90950 0.88501 0.88096 0.89884 0.87838 0.88759 0.89183 0.89901 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.73 -17.72 5.43 -59.91 -0.33 -18.04 16 10 C 0.15 2.84 5.80 -4.04 -0.02 2.82 16 11 C 0.17 2.81 2.43 -67.94 -0.17 2.64 16 12 H 0.09 1.67 7.34 -51.93 -0.38 1.29 16 13 N -0.70 -11.06 4.46 -53.81 -0.24 -11.30 16 14 C 0.57 9.11 6.84 -10.99 -0.08 9.04 16 15 O -0.54 -10.08 13.87 5.56 0.08 -10.01 16 16 C -0.21 -2.85 2.87 -154.09 -0.44 -3.29 16 17 C -0.11 -1.18 9.70 -26.73 -0.26 -1.44 16 18 C -0.17 -1.97 6.93 -89.05 -0.62 -2.58 16 19 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 20 C 0.07 0.80 7.53 37.93 0.29 1.09 16 21 O -0.37 -5.20 11.31 -35.23 -0.40 -5.60 16 22 C 0.08 1.21 7.09 37.93 0.27 1.48 16 23 C -0.16 -2.29 5.36 -90.62 -0.49 -2.78 16 24 C -0.17 -2.24 10.18 -26.70 -0.27 -2.51 16 25 C -0.19 -2.52 9.74 -26.69 -0.26 -2.78 16 26 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.39 9.95 7.33 -40.82 -0.30 9.65 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.40 6.18 8.45 -40.82 -0.34 5.83 16 31 H 0.11 1.06 8.06 -51.93 -0.42 0.65 16 32 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.10 1.36 8.11 -51.93 -0.42 0.93 16 38 H 0.09 1.30 8.05 -51.93 -0.42 0.89 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.12 1.82 5.02 -51.93 -0.26 1.56 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -30.77 338.90 -8.69 -39.45 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -6.32 Total: 15.55 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.29 Total: -5.44 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.16 Total: -56.07 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.32 Total: -15.61 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.77 -8.69 -39.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723302968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.252 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds