Wall clock time and date at job start Tue Mar 31 2020 02:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48497 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 300.00078 * 3 2 1 6 6 H 1.48501 * 109.46878 * 59.99834 * 3 2 1 7 7 C 1.38809 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00371 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00216 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47393 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46566 * 64.99985 * 11 10 9 13 13 N 1.46495 * 109.47212 * 305.00213 * 11 10 9 14 14 C 1.34779 * 120.00041 * 154.99449 * 13 11 10 15 15 O 1.21279 * 119.99981 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99893 * 179.97438 * 14 13 11 17 17 C 1.53005 * 119.81207 * 250.23532 * 16 14 13 18 18 C 1.53006 * 60.65272 * 247.69098 * 17 16 14 19 19 H 1.09000 * 119.80386 * 112.30870 * 18 17 16 20 20 C 1.54475 * 118.06445 * 269.58725 * 18 17 16 21 21 O 1.44430 * 104.80245 * 38.87392 * 20 18 17 22 22 C 1.44425 * 105.27508 * 40.51025 * 21 20 18 23 23 C 1.52998 * 109.47026 * 184.99940 * 11 10 9 24 24 C 1.52998 * 117.49849 * 248.74530 * 23 11 10 25 25 C 1.53006 * 117.49630 * 180.09057 * 23 11 10 26 26 H 0.97002 * 120.00113 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99998 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.46899 * 59.99528 * 10 9 7 29 29 H 1.09001 * 109.47035 * 300.00352 * 10 9 7 30 30 H 0.97003 * 120.00409 * 334.99833 * 13 11 10 31 31 H 1.08991 * 117.43340 * 140.01539 * 17 16 14 32 32 H 1.09001 * 117.42666 * 355.36503 * 17 16 14 33 33 H 1.08996 * 110.37331 * 157.70209 * 20 18 17 34 34 H 1.08997 * 110.37540 * 280.04093 * 20 18 17 35 35 H 1.08994 * 110.37259 * 200.65452 * 22 21 20 36 36 H 1.09001 * 110.36748 * 78.31921 * 22 21 20 37 37 H 1.08994 * 115.54882 * 34.42096 * 23 11 10 38 38 H 1.09006 * 117.49907 * 0.02562 * 24 23 11 39 39 H 1.08996 * 117.49940 * 145.02151 * 24 23 11 40 40 H 1.08998 * 117.49980 * 214.98033 * 25 23 11 41 41 H 1.09001 * 117.49404 * 359.97431 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 6 1.0637 -4.8198 -0.0022 12 1 0.4979 -4.8134 -0.9339 13 7 0.1438 -4.6764 1.1288 14 6 -1.0807 -5.2371 1.0768 15 8 -1.4208 -5.8608 0.0938 16 6 -2.0268 -5.0901 2.2405 17 6 -2.3545 -6.3039 3.1125 18 6 -3.4483 -5.6955 2.2324 19 1 -3.8376 -6.2592 1.3846 20 6 -4.3334 -4.5835 2.8377 21 8 -3.4303 -3.7850 3.6331 22 6 -2.2212 -3.6838 2.8497 23 6 1.8245 -6.1412 0.1235 24 6 1.8345 -7.0691 -1.0930 25 6 1.0019 -7.4312 0.1393 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 -0.0016 28 1 2.6840 -3.7149 0.8888 29 1 2.6854 -3.7142 -0.8911 30 1 0.4159 -4.1778 1.9152 31 1 -2.4287 -6.1441 4.1881 32 1 -1.9429 -7.2663 2.8085 33 1 -4.7776 -3.9793 2.0466 34 1 -5.1107 -5.0174 3.4667 35 1 -1.3760 -3.4266 3.4879 36 1 -2.3416 -2.9417 2.0605 37 1 2.7230 -6.1096 0.7397 38 1 1.2994 -6.7379 -1.9830 39 1 2.7394 -7.6482 -1.2768 40 1 1.3594 -8.2484 0.7658 41 1 -0.0813 -7.3383 0.0606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723302968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:37 Heat of formation + Delta-G solvation = -28.772485 kcal Electronic energy + Delta-G solvation = -22653.163182 eV Core-core repulsion = 19341.559783 eV Total energy + Delta-G solvation = -3311.603400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.96442 -40.39179 -38.32748 -36.63362 -35.39428 -35.00362 -33.01625 -30.35553 -29.27894 -26.86465 -26.00371 -24.43196 -23.19443 -23.06456 -21.75556 -21.33983 -20.71313 -19.25304 -18.55054 -17.55412 -16.89487 -16.77328 -16.67921 -16.26139 -16.04220 -15.80566 -15.26989 -15.03159 -14.88701 -14.39446 -13.92446 -13.81656 -13.73945 -13.21801 -13.04130 -12.84297 -12.71674 -12.52894 -12.47131 -12.26774 -12.04649 -11.85748 -11.68277 -11.33056 -11.19480 -11.06903 -11.00091 -10.68478 -10.64234 -9.98530 -9.02312 -7.94959 -5.24585 1.45536 1.48168 1.48875 1.58613 2.03683 2.42574 2.55269 2.81692 3.00747 3.39529 3.44177 3.46841 3.56829 3.74110 3.86323 3.95782 4.08862 4.13094 4.16754 4.32833 4.43516 4.44677 4.61449 4.62400 4.63918 4.69112 4.75821 4.79750 4.81628 4.89100 5.03510 5.08109 5.10553 5.28020 5.35461 5.50205 5.55676 5.61491 6.25440 6.54715 7.21405 7.33187 8.05234 8.29665 9.27978 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.006111 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.303167 B = 4580.768104 C = 6436.743895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.057 0.943 13 N -0.697 5.697 14 C 0.564 3.436 15 O -0.573 6.573 16 C -0.229 4.229 17 C -0.080 4.080 18 C -0.160 4.160 19 H 0.131 0.869 20 C 0.067 3.933 21 O -0.380 6.380 22 C 0.090 3.910 23 C -0.166 4.166 24 C -0.165 4.165 25 C -0.180 4.180 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.408 0.592 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 -15.657 6.983 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.075 0.925 13 N -0.345 5.345 14 C 0.352 3.648 15 O -0.454 6.454 16 C -0.232 4.232 17 C -0.117 4.117 18 C -0.179 4.179 19 H 0.149 0.851 20 C -0.009 4.009 21 O -0.298 6.298 22 C 0.013 3.987 23 C -0.185 4.185 24 C -0.203 4.203 25 C -0.217 4.217 26 H 0.058 0.942 27 H 0.206 0.794 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.243 0.757 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.598 -15.865 6.483 17.334 hybrid contribution 0.154 1.504 -0.383 1.560 sum -2.444 -14.361 6.099 15.793 Atomic orbital electron populations 1.69828 1.06575 1.25873 1.59405 1.25527 0.96308 1.00966 1.03650 0.85102 0.78346 0.79978 0.76470 1.18915 1.22534 1.22050 1.19649 0.91580 0.85032 1.41164 0.90301 1.42509 1.05607 1.00891 1.89528 1.21043 0.93344 0.83842 0.99468 1.20577 0.89555 0.93544 0.88971 0.92476 1.45850 1.14215 1.54007 1.20453 1.19259 0.81533 0.77624 0.86420 1.90590 1.76899 1.43582 1.34283 1.23056 1.01056 0.97045 1.02091 1.22984 0.96705 0.93679 0.98368 1.24267 0.88628 1.01248 1.03708 0.85106 1.23161 0.92647 0.89496 0.95642 1.89143 1.25553 1.73223 1.41928 1.22672 0.88657 0.92281 0.95058 1.22563 1.01896 0.90021 1.04050 1.22981 1.02743 1.02613 0.91930 1.23198 0.99336 0.97626 1.01524 0.94154 0.79420 0.94071 0.94522 0.75675 0.86045 0.86477 0.91303 0.85430 0.87523 0.92976 0.86016 0.90153 0.86559 0.87601 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.24 -13.11 9.99 84.03 0.84 -12.27 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -36.33 5.43 -343.45 -1.87 -38.20 16 10 C 0.15 5.68 5.80 86.38 0.50 6.18 16 11 C 0.18 5.96 2.43 44.99 0.11 6.07 16 12 H 0.06 2.26 7.34 -2.39 -0.02 2.25 16 13 N -0.70 -22.24 4.46 -442.55 -1.98 -24.22 16 14 C 0.56 18.39 6.84 87.66 0.60 18.99 16 15 O -0.57 -21.68 13.87 -3.03 -0.04 -21.72 16 16 C -0.23 -6.14 2.87 -51.91 -0.15 -6.29 16 17 C -0.08 -1.60 9.70 30.60 0.30 -1.30 16 18 C -0.16 -3.61 6.93 -9.78 -0.07 -3.68 16 19 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 20 C 0.07 1.44 7.53 72.48 0.55 1.99 16 21 O -0.38 -10.40 11.31 -148.98 -1.69 -12.08 16 22 C 0.09 2.61 7.09 72.49 0.51 3.13 16 23 C -0.17 -4.40 5.36 -10.79 -0.06 -4.46 16 24 C -0.17 -4.05 10.18 30.62 0.31 -3.73 16 25 C -0.18 -4.58 9.74 30.62 0.30 -4.28 16 26 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.37 19.90 7.33 -92.71 -0.68 19.22 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.41 12.49 8.45 -92.71 -0.78 11.71 16 31 H 0.12 2.08 8.06 -2.39 -0.02 2.06 16 32 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.12 2.83 8.11 -2.39 -0.02 2.81 16 38 H 0.08 2.19 8.05 -2.38 -0.02 2.18 16 39 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.09 2.88 5.02 -2.39 -0.01 2.87 16 Total: -1.00 -66.36 338.90 0.53 -65.82 By element: Atomic # 1 Polarization: 44.59 SS G_CDS: -0.42 Total: 44.17 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 4.21 Total: -3.26 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -3.56 Total: -120.44 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.73 Total: -33.80 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.36 0.53 -65.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723302968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.051 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds