Wall clock time and date at job start Tue Mar 31 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99991 * 2 1 4 4 H 1.48499 * 109.47099 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.46845 * 29.99417 * 3 2 1 6 6 H 1.48494 * 109.47297 * 149.99808 * 3 2 1 7 7 C 1.38806 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99686 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00449 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99820 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46826 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46953 * 295.00176 * 11 10 9 13 13 N 1.46501 * 109.46649 * 55.00058 * 11 10 9 14 14 C 1.34784 * 119.99428 * 204.99645 * 13 11 10 15 15 O 1.21280 * 120.00319 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99598 * 180.02562 * 14 13 11 17 17 C 1.52990 * 119.80850 * 248.97857 * 16 14 13 18 18 C 1.53133 * 60.75067 * 246.70552 * 17 16 14 19 19 H 1.09002 * 120.39721 * 112.13618 * 18 17 16 20 20 C 1.54484 * 117.98026 * 269.76712 * 18 17 16 21 21 O 1.44418 * 104.90071 * 86.67985 * 20 18 17 22 22 C 1.44428 * 105.27730 * 319.43393 * 21 20 18 23 23 C 1.52996 * 109.47144 * 175.00144 * 11 10 9 24 24 C 1.52999 * 117.49937 * 248.62174 * 23 11 10 25 25 C 1.52994 * 59.99919 * 252.51046 * 24 23 11 26 26 H 0.97003 * 120.00232 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00153 * 0.02562 * 9 7 2 28 28 H 1.09006 * 109.47172 * 60.00438 * 10 9 7 29 29 H 1.08990 * 109.47653 * 299.99878 * 10 9 7 30 30 H 0.96990 * 120.00316 * 25.00527 * 13 11 10 31 31 H 1.09003 * 117.43717 * 354.34878 * 17 16 14 32 32 H 1.09000 * 117.43535 * 138.99616 * 17 16 14 33 33 H 1.09002 * 110.37173 * 327.79333 * 20 18 17 34 34 H 1.08999 * 110.37313 * 205.56756 * 20 18 17 35 35 H 1.09007 * 110.37191 * 159.34114 * 22 21 20 36 36 H 1.08992 * 110.37170 * 281.67756 * 22 21 20 37 37 H 1.09003 * 115.54882 * 34.32816 * 23 11 10 38 38 H 1.08998 * 117.49708 * 0.02562 * 24 23 11 39 39 H 1.09007 * 117.49656 * 145.02135 * 24 23 11 40 40 H 1.09004 * 117.49941 * 252.50636 * 25 24 23 41 41 H 1.09008 * 117.49861 * 107.49081 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1121 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8942 -1.6986 -0.9298 13 7 5.9517 -1.3220 1.1326 14 6 7.0497 -0.5420 1.0806 15 8 7.7598 -0.5594 0.0976 16 6 7.3948 0.3516 2.2439 17 6 7.2821 1.8702 2.0961 18 6 8.6637 1.2373 2.2844 19 1 9.3924 1.2524 1.4738 20 6 9.1916 1.0649 3.7259 21 8 8.6638 -0.2055 4.1653 22 6 7.3097 -0.2486 3.6648 23 6 6.3805 -3.5106 0.1288 24 6 7.1416 -3.7637 1.4317 25 6 7.9088 -3.4430 0.1474 26 1 -0.4850 0.8400 -0.0004 27 1 3.8647 -0.3620 0.0014 28 1 3.8492 -3.0429 -0.8876 29 1 3.8485 -3.0418 0.8924 30 1 5.3836 -1.3080 1.9187 31 1 7.0407 2.2620 1.1080 32 1 6.8662 2.4270 2.9357 33 1 8.8243 1.8693 4.3632 34 1 10.2814 1.0453 3.7311 35 1 6.9538 -1.2780 3.6213 36 1 6.6538 0.3543 4.2928 37 1 5.9205 -4.3691 -0.3607 38 1 7.0978 -2.9904 2.1985 39 1 7.1825 -4.7890 1.7996 40 1 8.4545 -4.2572 -0.3296 41 1 8.3700 -2.4584 0.0692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723302970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:40 Heat of formation + Delta-G solvation = 0.654031 kcal Electronic energy + Delta-G solvation = -22945.488982 eV Core-core repulsion = 19635.161612 eV Total energy + Delta-G solvation = -3310.327370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07060 -39.43613 -37.15593 -35.10844 -34.75151 -33.43181 -31.46024 -29.48065 -28.31699 -25.65696 -24.26131 -23.38508 -22.27430 -21.41619 -21.31329 -19.96283 -19.67097 -17.97837 -17.39391 -16.42782 -16.09099 -15.63299 -15.57913 -15.05368 -14.63423 -14.38347 -14.05164 -13.80946 -13.55031 -13.26948 -12.90651 -12.82043 -12.26168 -12.14174 -11.89030 -11.61573 -11.52868 -11.31137 -11.08192 -10.93333 -10.92432 -10.47696 -10.26424 -10.23301 -9.95541 -9.76802 -9.64260 -9.57971 -8.99665 -8.84323 -7.32091 -5.83160 -3.19634 2.46224 3.05204 3.30129 3.31433 3.35325 3.39948 3.73613 3.98086 4.14093 4.23935 4.52770 4.57817 4.70524 4.72659 4.81879 5.04767 5.09130 5.12649 5.31367 5.36345 5.40414 5.40913 5.44775 5.46147 5.59428 5.63450 5.77062 5.81585 5.84005 5.85965 6.05456 6.21119 6.35179 6.39366 6.44016 6.54575 6.75382 7.62451 7.91914 8.29113 8.35403 9.13737 9.85824 10.05154 11.34977 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.006453 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.216810 B = 4337.760715 C = 5577.460925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.883 3.117 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.165 3.835 12 H 0.091 0.909 13 N -0.706 5.706 14 C 0.562 3.438 15 O -0.537 6.537 16 C -0.210 4.210 17 C -0.108 4.108 18 C -0.157 4.157 19 H 0.132 0.868 20 C 0.072 3.928 21 O -0.367 6.367 22 C 0.084 3.916 23 C -0.161 4.161 24 C -0.176 4.176 25 C -0.186 4.186 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.406 0.594 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.131 -0.367 7.247 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.060 3.940 12 H 0.109 0.891 13 N -0.357 5.357 14 C 0.348 3.652 15 O -0.415 6.415 16 C -0.213 4.213 17 C -0.145 4.145 18 C -0.175 4.175 19 H 0.149 0.851 20 C -0.005 4.005 21 O -0.286 6.286 22 C 0.007 3.993 23 C -0.181 4.181 24 C -0.213 4.213 25 C -0.223 4.223 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.241 0.759 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.486 -0.663 6.666 19.663 hybrid contribution 0.014 1.276 0.112 1.281 sum 18.501 0.613 6.778 19.713 Atomic orbital electron populations 1.69694 1.05077 1.25866 1.57303 1.24655 0.95194 0.97131 1.01904 0.86574 0.79107 0.85107 0.77881 1.21133 1.21696 1.20363 1.19041 0.80448 0.94787 1.43323 0.89089 1.42688 1.04094 1.02050 1.91271 1.20899 0.86827 0.89872 0.99909 1.20855 0.95252 0.88217 0.89678 0.89062 1.45967 1.26236 1.42364 1.21107 1.18954 0.80680 0.79115 0.86426 1.90625 1.50704 1.66854 1.33315 1.23338 1.07583 0.93903 0.96499 1.23195 0.96478 0.90189 1.04632 1.24399 0.90660 1.02737 0.99735 0.85056 1.22972 0.99924 0.86444 0.91117 1.89200 1.26464 1.37004 1.75931 1.22866 0.84964 1.02067 0.89374 1.22674 0.94022 0.99094 1.02312 1.22886 1.04998 1.01871 0.91525 1.23311 0.93928 1.04243 1.00802 0.92996 0.80477 0.93808 0.94667 0.75914 0.87129 0.87532 0.91554 0.88213 0.88289 0.90832 0.86971 0.89160 0.89306 0.89624 0.86741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.78 13.97 55.49 0.78 -28.00 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.73 27.74 -169.99 -4.71 17.02 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 7 C -0.25 -6.77 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -17.17 5.24 -59.90 -0.31 -17.49 16 10 C 0.15 2.78 5.80 -4.04 -0.02 2.75 16 11 C 0.16 2.59 2.59 -67.93 -0.18 2.41 16 12 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 13 N -0.71 -10.47 2.90 -53.80 -0.16 -10.63 16 14 C 0.56 8.56 6.28 -10.98 -0.07 8.49 16 15 O -0.54 -9.57 13.92 5.56 0.08 -9.49 16 16 C -0.21 -2.62 2.84 -153.94 -0.44 -3.06 16 17 C -0.11 -1.18 9.87 -26.67 -0.26 -1.45 16 18 C -0.16 -1.68 6.98 -88.83 -0.62 -2.30 16 19 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 20 C 0.07 0.67 7.43 37.94 0.28 0.95 16 21 O -0.37 -4.38 11.65 -35.23 -0.41 -4.79 16 22 C 0.08 0.93 7.02 37.93 0.27 1.19 16 23 C -0.16 -2.19 5.71 -90.62 -0.52 -2.71 16 24 C -0.18 -2.21 9.73 -26.73 -0.26 -2.47 16 25 C -0.19 -2.53 9.82 -26.74 -0.26 -2.79 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.36 8.22 5.19 -40.82 -0.21 8.01 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.41 5.69 8.15 -40.82 -0.33 5.36 16 31 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.04 7.01 -51.92 -0.36 0.68 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.40 8.11 -51.93 -0.42 0.98 16 38 H 0.09 1.15 6.03 -51.93 -0.31 0.84 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.11 1.82 5.02 -51.92 -0.26 1.56 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -32.30 331.08 -8.20 -40.51 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -6.12 Total: 13.67 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.33 Total: -5.79 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.31 Total: -56.12 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.33 Total: -14.28 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.30 -8.20 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723302970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.162 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds