Wall clock time and date at job start Tue Mar 31 2020 02:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99991 * 2 1 4 4 H 1.48499 * 109.47099 * 270.00017 * 3 2 1 5 5 H 1.48500 * 109.46845 * 29.99417 * 3 2 1 6 6 H 1.48494 * 109.47297 * 149.99808 * 3 2 1 7 7 C 1.38806 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99686 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00449 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99820 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46826 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46953 * 295.00176 * 11 10 9 13 13 N 1.46501 * 109.46649 * 55.00058 * 11 10 9 14 14 C 1.34784 * 119.99428 * 204.99645 * 13 11 10 15 15 O 1.21280 * 120.00319 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99598 * 180.02562 * 14 13 11 17 17 C 1.52990 * 119.80850 * 248.97857 * 16 14 13 18 18 C 1.53133 * 60.75067 * 246.70552 * 17 16 14 19 19 H 1.09002 * 120.39721 * 112.13618 * 18 17 16 20 20 C 1.54484 * 117.98026 * 269.76712 * 18 17 16 21 21 O 1.44418 * 104.90071 * 86.67985 * 20 18 17 22 22 C 1.44428 * 105.27730 * 319.43393 * 21 20 18 23 23 C 1.52996 * 109.47144 * 175.00144 * 11 10 9 24 24 C 1.52999 * 117.49937 * 248.62174 * 23 11 10 25 25 C 1.52994 * 59.99919 * 252.51046 * 24 23 11 26 26 H 0.97003 * 120.00232 * 0.02562 * 1 2 3 27 27 H 0.96996 * 120.00153 * 0.02562 * 9 7 2 28 28 H 1.09006 * 109.47172 * 60.00438 * 10 9 7 29 29 H 1.08990 * 109.47653 * 299.99878 * 10 9 7 30 30 H 0.96990 * 120.00316 * 25.00527 * 13 11 10 31 31 H 1.09003 * 117.43717 * 354.34878 * 17 16 14 32 32 H 1.09000 * 117.43535 * 138.99616 * 17 16 14 33 33 H 1.09002 * 110.37173 * 327.79333 * 20 18 17 34 34 H 1.08999 * 110.37313 * 205.56756 * 20 18 17 35 35 H 1.09007 * 110.37191 * 159.34114 * 22 21 20 36 36 H 1.08992 * 110.37170 * 281.67756 * 22 21 20 37 37 H 1.09003 * 115.54882 * 34.32816 * 23 11 10 38 38 H 1.08998 * 117.49708 * 0.02562 * 24 23 11 39 39 H 1.09007 * 117.49656 * 145.02135 * 24 23 11 40 40 H 1.09004 * 117.49941 * 252.50636 * 25 24 23 41 41 H 1.09008 * 117.49861 * 107.49081 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1121 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0020 12 1 5.8942 -1.6986 -0.9298 13 7 5.9517 -1.3220 1.1326 14 6 7.0497 -0.5420 1.0806 15 8 7.7598 -0.5594 0.0976 16 6 7.3948 0.3516 2.2439 17 6 7.2821 1.8702 2.0961 18 6 8.6637 1.2373 2.2844 19 1 9.3924 1.2524 1.4738 20 6 9.1916 1.0649 3.7259 21 8 8.6638 -0.2055 4.1653 22 6 7.3097 -0.2486 3.6648 23 6 6.3805 -3.5106 0.1288 24 6 7.1416 -3.7637 1.4317 25 6 7.9088 -3.4430 0.1474 26 1 -0.4850 0.8400 -0.0004 27 1 3.8647 -0.3620 0.0014 28 1 3.8492 -3.0429 -0.8876 29 1 3.8485 -3.0418 0.8924 30 1 5.3836 -1.3080 1.9187 31 1 7.0407 2.2620 1.1080 32 1 6.8662 2.4270 2.9357 33 1 8.8243 1.8693 4.3632 34 1 10.2814 1.0453 3.7311 35 1 6.9538 -1.2780 3.6213 36 1 6.6538 0.3543 4.2928 37 1 5.9205 -4.3691 -0.3607 38 1 7.0978 -2.9904 2.1985 39 1 7.1825 -4.7890 1.7996 40 1 8.4545 -4.2572 -0.3296 41 1 8.3700 -2.4584 0.0692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723302970.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:39 Heat of formation + Delta-G solvation = -21.236375 kcal Electronic energy + Delta-G solvation = -22946.438222 eV Core-core repulsion = 19635.161612 eV Total energy + Delta-G solvation = -3311.276609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.05147 -40.49755 -38.35111 -36.71936 -35.63378 -34.89370 -33.38034 -30.72779 -29.47516 -26.47965 -25.91855 -24.55830 -23.43643 -22.91586 -22.19004 -21.13126 -20.80453 -19.77384 -18.52992 -17.52773 -17.31925 -16.75338 -16.48964 -16.40160 -16.04944 -15.56144 -15.32381 -15.13144 -14.82041 -14.65797 -14.39988 -13.87113 -13.65714 -13.45447 -13.04018 -13.01337 -12.83044 -12.71835 -12.37146 -12.23536 -12.09908 -11.84076 -11.82683 -11.36252 -11.29545 -11.06188 -10.91532 -10.83294 -10.59420 -10.07983 -9.33684 -8.03879 -5.37864 1.33827 1.36653 1.38407 1.44987 1.96884 2.36659 2.45831 2.89763 2.95448 3.28336 3.31278 3.38489 3.41004 3.62336 3.87157 3.90049 3.96475 4.01453 4.05310 4.30364 4.32203 4.39689 4.52680 4.56991 4.62856 4.63370 4.74936 4.80853 4.82720 4.85359 5.01959 5.04430 5.07988 5.22881 5.34212 5.47695 5.63493 5.74757 6.19047 6.45684 7.05088 7.13035 7.79687 7.98695 9.17299 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.014984 B = 0.006453 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.216810 B = 4337.760715 C = 5577.460925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.058 4.058 3 Si 0.949 3.051 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.249 1.249 7 C -0.232 4.232 8 H 0.062 0.938 9 N -0.755 5.755 10 C 0.154 3.846 11 C 0.176 3.824 12 H 0.070 0.930 13 N -0.704 5.704 14 C 0.559 3.441 15 O -0.569 6.569 16 C -0.230 4.230 17 C -0.102 4.102 18 C -0.148 4.148 19 H 0.123 0.877 20 C 0.072 3.928 21 O -0.387 6.387 22 C 0.088 3.912 23 C -0.166 4.166 24 C -0.163 4.163 25 C -0.189 4.189 26 H 0.258 0.742 27 H 0.364 0.636 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.411 0.589 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.997 0.042 8.668 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.777 3.223 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.173 1.173 7 C -0.363 4.363 8 H 0.080 0.920 9 N -0.401 5.401 10 C 0.027 3.973 11 C 0.071 3.929 12 H 0.088 0.912 13 N -0.354 5.354 14 C 0.346 3.654 15 O -0.449 6.449 16 C -0.233 4.233 17 C -0.139 4.139 18 C -0.167 4.167 19 H 0.141 0.859 20 C -0.004 4.004 21 O -0.306 6.306 22 C 0.011 3.989 23 C -0.185 4.185 24 C -0.200 4.200 25 C -0.226 4.226 26 H 0.067 0.933 27 H 0.198 0.802 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.247 0.753 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 20.397 -0.282 8.106 21.951 hybrid contribution -0.541 1.048 -0.382 1.240 sum 19.856 0.766 7.724 21.319 Atomic orbital electron populations 1.69865 1.07020 1.26625 1.59605 1.25415 0.95983 1.00913 1.02690 0.85500 0.78894 0.80250 0.77682 1.21623 1.21922 1.17322 1.19021 0.82405 0.93603 1.41226 0.91988 1.42654 1.02546 1.03849 1.91084 1.21015 0.88076 0.88008 1.00183 1.20579 0.93571 0.89455 0.89337 0.91209 1.45934 1.26376 1.42275 1.20843 1.19430 0.80104 0.78980 0.86840 1.90612 1.51610 1.67804 1.34847 1.23380 1.09519 0.94229 0.96194 1.23301 0.96559 0.89048 1.05020 1.24477 0.90209 1.01449 1.00601 0.85911 1.23166 1.00858 0.86171 0.90182 1.89180 1.26951 1.38382 1.76055 1.22914 0.85053 1.02392 0.88554 1.22622 0.93930 0.98243 1.03739 1.22964 1.03239 1.02934 0.90844 1.23246 0.93713 1.03652 1.02005 0.93325 0.80249 0.93760 0.93643 0.75323 0.88293 0.85057 0.89281 0.86763 0.88328 0.88956 0.85587 0.89395 0.87288 0.88052 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.68 13.97 21.65 0.30 -61.38 16 2 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 3 Si 0.95 44.64 27.74 68.60 1.90 46.54 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.25 -10.36 6.52 99.48 0.65 -9.72 16 7 C -0.23 -12.77 10.47 84.03 0.88 -11.89 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 N -0.76 -33.69 5.24 -343.44 -1.80 -35.48 16 10 C 0.15 5.44 5.80 86.38 0.50 5.94 16 11 C 0.18 5.35 2.59 44.99 0.12 5.47 16 12 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16 13 N -0.70 -19.95 2.90 -442.52 -1.28 -21.23 16 14 C 0.56 16.45 6.28 87.66 0.55 17.00 16 15 O -0.57 -20.18 13.92 -3.03 -0.04 -20.22 16 16 C -0.23 -5.30 2.84 -51.81 -0.15 -5.45 16 17 C -0.10 -1.99 9.87 30.64 0.30 -1.69 16 18 C -0.15 -2.89 6.98 -9.63 -0.07 -2.96 16 19 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 20 C 0.07 1.13 7.43 72.49 0.54 1.67 16 21 O -0.39 -8.25 11.65 -148.98 -1.74 -9.99 16 22 C 0.09 1.71 7.02 72.49 0.51 2.22 16 23 C -0.17 -4.23 5.71 -10.80 -0.06 -4.29 16 24 C -0.16 -3.73 9.73 30.59 0.30 -3.43 16 25 C -0.19 -4.88 9.82 30.59 0.30 -4.58 16 26 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.36 15.95 5.19 -92.71 -0.48 15.47 16 28 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.41 10.80 8.15 -92.72 -0.76 10.04 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.87 7.01 -2.38 -0.02 1.86 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.13 2.87 8.11 -2.39 -0.02 2.85 16 38 H 0.09 2.07 6.03 -2.39 -0.01 2.05 16 39 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.09 2.87 5.02 -2.38 -0.01 2.86 16 Total: -1.00 -69.98 331.08 1.29 -68.69 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.24 Total: 37.94 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.19 Total: -4.87 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -2.78 Total: -118.09 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -1.78 Total: -30.20 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Total: -69.98 1.29 -68.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723302970.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.453 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds