Wall clock time and date at job start Tue Mar 31 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48491 * 109.46924 * 274.98928 * 3 2 1 5 5 H 1.48500 * 109.46661 * 34.99105 * 3 2 1 6 6 H 1.48505 * 109.46940 * 154.98800 * 3 2 1 7 7 C 1.38818 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00221 * 185.06709 * 7 2 1 9 9 N 1.36938 * 119.99686 * 5.06536 * 7 2 1 10 10 C 1.47584 * 134.49226 * 173.48695 * 9 7 2 11 11 C 1.53940 * 86.11734 * 155.35360 * 10 9 7 12 12 O 1.42900 * 113.74622 * 269.15211 * 11 10 9 13 13 C 1.53003 * 113.73928 * 137.95110 * 11 10 9 14 14 N 1.46502 * 109.47060 * 184.99877 * 13 11 10 15 15 C 1.34773 * 119.99829 * 179.72287 * 14 13 11 16 16 O 1.21280 * 120.00542 * 0.28202 * 15 14 13 17 17 C 1.50705 * 120.00238 * 180.27603 * 15 14 13 18 18 H 1.09003 * 115.54772 * 34.27676 * 17 15 14 19 19 C 1.53003 * 117.50055 * 248.61330 * 17 15 14 20 20 C 1.52991 * 117.50335 * 179.97438 * 17 15 14 21 21 H 1.09005 * 117.49897 * 359.97438 * 20 17 15 22 22 C 1.53008 * 117.49898 * 214.98037 * 20 17 15 23 23 C 1.52998 * 117.49911 * 128.74369 * 22 20 17 24 24 C 1.53002 * 117.49603 * 60.08581 * 22 20 17 25 25 C 1.47585 * 134.49641 * 353.47903 * 9 7 2 26 26 H 0.96996 * 119.99603 * 359.97438 * 1 2 3 27 27 H 1.09004 * 113.76948 * 41.05050 * 10 9 7 28 28 H 1.09002 * 113.86685 * 269.66925 * 10 9 7 29 29 H 0.96697 * 114.00481 * 178.08071 * 12 11 10 30 30 H 1.09004 * 109.47172 * 64.99813 * 13 11 10 31 31 H 1.09002 * 109.47329 * 304.99775 * 13 11 10 32 32 H 0.96996 * 119.99817 * 0.02562 * 14 13 11 33 33 H 1.08999 * 117.49317 * 359.97438 * 19 17 15 34 34 H 1.09000 * 117.49724 * 144.99199 * 19 17 15 35 35 H 1.08996 * 115.54588 * 274.41592 * 22 20 17 36 36 H 1.09001 * 117.50103 * 359.97438 * 23 22 20 37 37 H 1.08995 * 117.50361 * 145.01943 * 23 22 20 38 38 H 1.09003 * 117.49433 * 214.97687 * 24 22 20 39 39 H 1.08998 * 117.50000 * 359.97385 * 24 22 20 40 40 H 1.08991 * 113.76823 * 90.34029 * 25 9 7 41 41 H 1.09007 * 113.76455 * 318.94385 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5966 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0821 9 7 1.3296 -2.3857 -0.1058 10 6 1.7286 -3.7984 -0.2583 11 6 0.3710 -4.1420 0.3809 12 8 0.4187 -4.2616 1.8040 13 6 -0.3480 -5.3129 -0.2923 14 7 -1.6735 -5.4823 0.3083 15 6 -2.4937 -6.4564 -0.1331 16 8 -2.1326 -7.1959 -1.0240 17 6 -3.8597 -6.6268 0.4803 18 1 -4.3518 -5.7065 0.7951 19 6 -4.1055 -7.8821 1.3199 20 6 -4.7437 -7.7502 -0.0646 21 1 -4.3376 -8.3659 -0.8673 22 6 -6.2513 -7.4961 -0.1262 23 6 -6.9591 -7.7642 -1.4559 24 6 -6.7358 -6.3253 -0.9839 25 6 -0.0977 -2.7610 -0.1121 26 1 -0.4849 0.8400 0.0004 27 1 2.5860 -4.0811 0.3526 28 1 1.8203 -4.1213 -1.2953 29 1 -0.4378 -4.4484 2.2121 30 1 0.2332 -6.2245 -0.1532 31 1 -0.4552 -5.1094 -1.3577 32 1 -1.9624 -4.8907 1.0205 33 1 -3.2793 -8.5848 1.4281 34 1 -4.7593 -7.7876 2.1869 35 1 -6.8020 -7.7110 0.7895 36 1 -6.3508 -8.1213 -2.2869 37 1 -7.9757 -8.1553 -1.4150 38 1 -7.6057 -5.7703 -0.6325 39 1 -5.9806 -5.7359 -1.5038 40 1 -0.5432 -2.7774 -1.1067 41 1 -0.6986 -2.2154 0.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724479339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:17 Heat of formation + Delta-G solvation = 22.403889 kcal Electronic energy + Delta-G solvation = -21677.106431 eV Core-core repulsion = 18367.722205 eV Total energy + Delta-G solvation = -3309.384226 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20249 -38.95671 -37.87500 -35.15078 -34.83929 -33.97406 -31.99707 -28.79216 -26.46428 -25.05316 -24.46804 -23.43224 -22.59452 -21.79564 -20.53351 -19.90662 -19.31879 -17.73969 -16.75734 -16.34120 -15.77919 -15.69576 -15.14015 -15.06006 -14.57650 -14.17040 -13.94518 -13.49458 -13.43035 -12.95444 -12.72701 -12.51334 -12.26684 -11.87932 -11.77866 -11.62330 -11.18360 -11.09898 -11.08105 -10.96300 -10.75855 -10.43078 -10.28565 -10.02224 -9.93209 -9.67735 -9.49633 -9.23317 -8.92701 -8.82707 -6.90268 -5.80173 -3.10902 2.48050 3.07725 3.38952 3.43928 3.45889 3.46158 3.76671 4.32309 4.42666 4.49198 4.53748 4.59825 4.77049 4.83370 4.96706 5.05916 5.07666 5.19600 5.21908 5.27958 5.43210 5.46719 5.56793 5.66715 5.73322 5.75623 5.89169 5.91700 6.03684 6.06480 6.29397 6.42042 6.53360 6.56186 7.01101 7.12209 7.49543 7.51030 7.94187 8.10411 8.26225 9.02062 9.68210 10.55260 11.37798 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.003337 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.940640 B = 8389.447328 C = 8998.718230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.220 4.220 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.135 3.865 11 C 0.063 3.937 12 O -0.527 6.527 13 C 0.103 3.897 14 N -0.719 5.719 15 C 0.542 3.458 16 O -0.545 6.545 17 C -0.185 4.185 18 H 0.126 0.874 19 C -0.144 4.144 20 C -0.090 4.090 21 H 0.119 0.881 22 C -0.128 4.128 23 C -0.175 4.175 24 C -0.176 4.176 25 C 0.147 3.853 26 H 0.253 0.747 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.362 0.638 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.400 0.600 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.036 0.964 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.799 -15.199 2.150 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.009 3.991 11 C 0.020 3.980 12 O -0.330 6.330 13 C -0.022 4.022 14 N -0.371 5.371 15 C 0.329 3.671 16 O -0.423 6.423 17 C -0.206 4.206 18 H 0.144 0.856 19 C -0.181 4.181 20 C -0.109 4.109 21 H 0.137 0.863 22 C -0.146 4.146 23 C -0.212 4.212 24 C -0.213 4.213 25 C 0.021 3.979 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.208 0.792 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.234 0.766 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.053 0.947 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.814 -15.224 1.431 19.324 hybrid contribution -0.298 1.287 0.297 1.354 sum -12.112 -13.937 1.728 18.545 Atomic orbital electron populations 1.69819 1.05078 1.25361 1.56577 1.24807 0.95713 0.97556 1.02333 0.86092 0.78764 0.83418 0.77488 1.21615 1.21696 1.20510 1.19011 0.90789 0.81786 1.43117 0.90065 1.45649 1.01950 1.00576 1.84616 1.22559 0.93531 0.86404 0.96628 1.23772 0.99177 0.93624 0.81392 1.86614 1.34027 1.94166 1.18205 1.22054 0.82226 0.99330 0.98568 1.45865 1.16941 1.34274 1.40014 1.19634 0.85212 0.80016 0.82260 1.90685 1.76109 1.44931 1.30526 1.22323 0.95310 0.96175 1.06830 0.85637 1.23048 1.03085 0.97416 0.94586 1.21811 0.91171 0.99771 0.98107 0.86333 1.21775 0.93021 1.04250 0.95581 1.22999 1.01420 0.99292 0.97508 1.23009 1.03293 0.91257 1.03778 1.22834 0.88823 0.87994 0.98209 0.93675 0.92693 0.93242 0.79214 0.91197 0.90320 0.76574 0.88148 0.87715 0.87421 0.88578 0.88790 0.88733 0.88436 0.94667 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.51 55.49 0.64 -26.59 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.28 29.56 -169.99 -5.02 17.26 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.60 -15.60 3.70 -177.80 -0.66 -16.26 16 10 C 0.14 2.82 8.34 -2.98 -0.02 2.79 16 11 C 0.06 1.16 1.52 -89.70 -0.14 1.02 16 12 O -0.53 -9.52 13.51 -35.23 -0.48 -9.99 16 13 C 0.10 1.59 5.28 -4.04 -0.02 1.57 16 14 N -0.72 -9.39 5.34 -60.29 -0.32 -9.71 16 15 C 0.54 7.41 7.61 -10.98 -0.08 7.32 16 16 O -0.54 -9.43 16.26 5.56 0.09 -9.33 16 17 C -0.19 -1.88 5.83 -91.77 -0.54 -2.41 16 18 H 0.13 1.10 8.14 -51.93 -0.42 0.67 16 19 C -0.14 -1.22 9.96 -26.72 -0.27 -1.48 16 20 C -0.09 -0.87 5.38 -90.61 -0.49 -1.36 16 21 H 0.12 1.35 7.67 -51.93 -0.40 0.96 16 22 C -0.13 -1.04 5.87 -90.62 -0.53 -1.57 16 23 C -0.18 -1.38 10.25 -26.69 -0.27 -1.65 16 24 C -0.18 -1.47 10.18 -26.69 -0.27 -1.74 16 25 C 0.15 3.37 6.83 -2.97 -0.02 3.35 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.36 4.85 7.61 45.56 0.35 5.19 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 32 H 0.40 4.38 7.31 -40.82 -0.30 4.08 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 41 H 0.07 1.85 7.35 -51.93 -0.38 1.46 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -34.08 346.10 -9.20 -43.28 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.76 Total: 7.04 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.91 Total: -0.91 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.34 Total: -52.57 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.39 Total: -19.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.08 -9.20 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724479339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.686 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds