Wall clock time and date at job start Tue Mar 31 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48491 * 109.46924 * 274.98928 * 3 2 1 5 5 H 1.48500 * 109.46661 * 34.99105 * 3 2 1 6 6 H 1.48505 * 109.46940 * 154.98800 * 3 2 1 7 7 C 1.38818 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00221 * 185.06709 * 7 2 1 9 9 N 1.36938 * 119.99686 * 5.06536 * 7 2 1 10 10 C 1.47584 * 134.49226 * 173.48695 * 9 7 2 11 11 C 1.53940 * 86.11734 * 155.35360 * 10 9 7 12 12 O 1.42900 * 113.74622 * 269.15211 * 11 10 9 13 13 C 1.53003 * 113.73928 * 137.95110 * 11 10 9 14 14 N 1.46502 * 109.47060 * 184.99877 * 13 11 10 15 15 C 1.34773 * 119.99829 * 179.72287 * 14 13 11 16 16 O 1.21280 * 120.00542 * 0.28202 * 15 14 13 17 17 C 1.50705 * 120.00238 * 180.27603 * 15 14 13 18 18 H 1.09003 * 115.54772 * 34.27676 * 17 15 14 19 19 C 1.53003 * 117.50055 * 248.61330 * 17 15 14 20 20 C 1.52991 * 117.50335 * 179.97438 * 17 15 14 21 21 H 1.09005 * 117.49897 * 359.97438 * 20 17 15 22 22 C 1.53008 * 117.49898 * 214.98037 * 20 17 15 23 23 C 1.52998 * 117.49911 * 128.74369 * 22 20 17 24 24 C 1.53002 * 117.49603 * 60.08581 * 22 20 17 25 25 C 1.47585 * 134.49641 * 353.47903 * 9 7 2 26 26 H 0.96996 * 119.99603 * 359.97438 * 1 2 3 27 27 H 1.09004 * 113.76948 * 41.05050 * 10 9 7 28 28 H 1.09002 * 113.86685 * 269.66925 * 10 9 7 29 29 H 0.96697 * 114.00481 * 178.08071 * 12 11 10 30 30 H 1.09004 * 109.47172 * 64.99813 * 13 11 10 31 31 H 1.09002 * 109.47329 * 304.99775 * 13 11 10 32 32 H 0.96996 * 119.99817 * 0.02562 * 14 13 11 33 33 H 1.08999 * 117.49317 * 359.97438 * 19 17 15 34 34 H 1.09000 * 117.49724 * 144.99199 * 19 17 15 35 35 H 1.08996 * 115.54588 * 274.41592 * 22 20 17 36 36 H 1.09001 * 117.50103 * 359.97438 * 23 22 20 37 37 H 1.08995 * 117.50361 * 145.01943 * 23 22 20 38 38 H 1.09003 * 117.49433 * 214.97687 * 24 22 20 39 39 H 1.08998 * 117.50000 * 359.97385 * 24 22 20 40 40 H 1.08991 * 113.76823 * 90.34029 * 25 9 7 41 41 H 1.09007 * 113.76455 * 318.94385 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5966 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0821 9 7 1.3296 -2.3857 -0.1058 10 6 1.7286 -3.7984 -0.2583 11 6 0.3710 -4.1420 0.3809 12 8 0.4187 -4.2616 1.8040 13 6 -0.3480 -5.3129 -0.2923 14 7 -1.6735 -5.4823 0.3083 15 6 -2.4937 -6.4564 -0.1331 16 8 -2.1326 -7.1959 -1.0240 17 6 -3.8597 -6.6268 0.4803 18 1 -4.3518 -5.7065 0.7951 19 6 -4.1055 -7.8821 1.3199 20 6 -4.7437 -7.7502 -0.0646 21 1 -4.3376 -8.3659 -0.8673 22 6 -6.2513 -7.4961 -0.1262 23 6 -6.9591 -7.7642 -1.4559 24 6 -6.7358 -6.3253 -0.9839 25 6 -0.0977 -2.7610 -0.1121 26 1 -0.4849 0.8400 0.0004 27 1 2.5860 -4.0811 0.3526 28 1 1.8203 -4.1213 -1.2953 29 1 -0.4378 -4.4484 2.2121 30 1 0.2332 -6.2245 -0.1532 31 1 -0.4552 -5.1094 -1.3577 32 1 -1.9624 -4.8907 1.0205 33 1 -3.2793 -8.5848 1.4281 34 1 -4.7593 -7.7876 2.1869 35 1 -6.8020 -7.7110 0.7895 36 1 -6.3508 -8.1213 -2.2869 37 1 -7.9757 -8.1553 -1.4150 38 1 -7.6057 -5.7703 -0.6325 39 1 -5.9806 -5.7359 -1.5038 40 1 -0.5432 -2.7774 -1.1067 41 1 -0.6986 -2.2154 0.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724479339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:16 Heat of formation + Delta-G solvation = -2.193372 kcal Electronic energy + Delta-G solvation = -21678.173048 eV Core-core repulsion = 18367.722205 eV Total energy + Delta-G solvation = -3310.450843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34026 -40.38102 -38.77755 -36.52672 -35.81538 -35.26404 -34.02977 -30.41650 -28.12343 -26.79264 -25.54767 -24.30055 -23.48291 -23.17509 -21.51450 -21.01425 -20.64212 -19.00376 -18.55171 -17.51569 -17.23683 -16.60921 -16.52585 -16.27331 -15.87362 -15.64095 -15.37923 -14.95487 -14.70176 -14.38706 -14.01713 -13.87568 -13.44116 -13.33145 -12.98785 -12.87082 -12.58333 -12.50050 -12.28792 -12.22259 -11.88967 -11.80482 -11.76840 -11.44277 -11.03616 -10.97613 -10.85467 -10.74875 -10.52967 -10.16427 -8.94762 -7.94490 -5.26429 1.44518 1.45656 1.46416 1.55320 2.03169 2.45101 2.69825 3.03217 3.07145 3.24280 3.33726 3.52846 3.64851 3.76267 3.84898 3.88055 4.08164 4.17434 4.28484 4.34963 4.38811 4.54105 4.66522 4.72581 4.76818 4.83095 4.85176 4.93456 5.01994 5.06191 5.15789 5.23599 5.27343 5.29756 5.30865 5.39005 5.47515 5.89424 6.45251 6.81438 6.89393 7.18169 7.56766 8.50948 9.22952 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025921 B = 0.003337 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.940640 B = 8389.447328 C = 8998.718230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.636 5.636 10 C 0.128 3.872 11 C 0.100 3.900 12 O -0.539 6.539 13 C 0.118 3.882 14 N -0.712 5.712 15 C 0.540 3.460 16 O -0.585 6.585 17 C -0.191 4.191 18 H 0.144 0.856 19 C -0.123 4.123 20 C -0.097 4.097 21 H 0.095 0.905 22 C -0.123 4.123 23 C -0.178 4.178 24 C -0.182 4.182 25 C 0.147 3.853 26 H 0.249 0.751 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.384 0.616 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.411 0.589 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.543 -15.980 3.321 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.364 4.364 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.003 3.997 11 C 0.057 3.943 12 O -0.346 6.346 13 C -0.007 4.007 14 N -0.364 5.364 15 C 0.329 3.671 16 O -0.466 6.466 17 C -0.212 4.212 18 H 0.162 0.838 19 C -0.160 4.160 20 C -0.116 4.116 21 H 0.113 0.887 22 C -0.141 4.141 23 C -0.215 4.215 24 C -0.219 4.219 25 C 0.021 3.979 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.233 0.767 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.248 0.752 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.565 -16.031 2.628 20.537 hybrid contribution -0.049 1.465 -0.076 1.468 sum -12.615 -14.566 2.552 19.437 Atomic orbital electron populations 1.69987 1.06359 1.25697 1.57841 1.25637 0.96662 1.00797 1.02706 0.85055 0.77878 0.79087 0.77295 1.21406 1.21852 1.19316 1.19383 0.91247 0.83315 1.42503 0.90027 1.46032 1.03480 1.01707 1.84972 1.22795 0.94981 0.83879 0.98052 1.23125 0.97238 0.92242 0.81714 1.86566 1.36067 1.94084 1.17855 1.21717 0.83287 0.98032 0.97700 1.45771 1.16070 1.34497 1.40100 1.20236 0.86231 0.79084 0.81580 1.90669 1.77139 1.46411 1.32375 1.22318 0.93286 0.97683 1.07913 0.83824 1.23171 1.02744 0.95389 0.94724 1.21788 0.92125 0.99231 0.98448 0.88723 1.21827 0.91999 1.03831 0.96410 1.23068 1.02166 0.99026 0.97222 1.23020 1.03438 0.91409 1.04058 1.22772 0.87417 0.90553 0.97157 0.94171 0.92337 0.91222 0.76706 0.90319 0.91245 0.75187 0.88686 0.84786 0.85333 0.89712 0.87086 0.87331 0.90203 0.95711 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 11.51 21.65 0.25 -56.92 16 2 C -0.06 -3.73 5.50 84.86 0.47 -3.27 16 3 Si 0.98 46.14 29.56 68.60 2.03 48.17 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.57 10.70 84.03 0.90 -12.67 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 N -0.64 -33.17 3.70 -720.28 -2.66 -35.83 16 10 C 0.13 5.25 8.34 86.48 0.72 5.97 16 11 C 0.10 3.57 1.52 -10.14 -0.02 3.55 16 12 O -0.54 -18.66 13.51 -148.98 -2.01 -20.67 16 13 C 0.12 3.51 5.28 86.38 0.46 3.96 16 14 N -0.71 -17.69 5.34 -463.04 -2.47 -20.16 16 15 C 0.54 14.27 7.61 87.66 0.67 14.94 16 16 O -0.59 -20.22 16.26 -3.03 -0.05 -20.27 16 17 C -0.19 -3.55 5.83 -11.54 -0.07 -3.61 16 18 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 19 C -0.12 -1.76 9.96 30.60 0.30 -1.45 16 20 C -0.10 -1.75 5.38 -10.79 -0.06 -1.81 16 21 H 0.09 2.18 7.67 -2.38 -0.02 2.17 16 22 C -0.12 -1.74 5.87 -10.79 -0.06 -1.80 16 23 C -0.18 -2.58 10.25 30.62 0.31 -2.26 16 24 C -0.18 -2.79 10.18 30.62 0.31 -2.48 16 25 C 0.15 6.80 6.83 86.48 0.59 7.39 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 29 H 0.38 9.48 7.61 -74.06 -0.56 8.91 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 2.24 8.04 -2.39 -0.02 2.22 16 32 H 0.41 8.31 7.31 -92.71 -0.68 7.64 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.03 1.20 8.03 -2.39 -0.02 1.18 16 41 H 0.05 2.41 7.35 -2.38 -0.02 2.39 16 Total: -1.00 -74.23 346.10 -0.59 -74.82 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.20 Total: 24.40 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.53 Total: 6.45 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -4.88 Total: -112.90 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -2.06 Total: -40.94 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.23 -0.59 -74.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724479339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.625 kcal (2) G-P(sol) polarization free energy of solvation -74.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds