Wall clock time and date at job start Tue Mar 31 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48502 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47117 * 299.99642 * 3 2 1 6 6 H 1.48499 * 109.47368 * 60.00055 * 3 2 1 7 7 C 1.38816 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99916 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64933 * 359.96222 * 9 7 2 11 11 C 1.54909 * 104.83282 * 204.16187 * 10 9 7 12 12 C 1.55151 * 101.58298 * 322.98855 * 11 10 9 13 13 O 1.42902 * 110.87614 * 277.06690 * 12 11 10 14 14 C 1.53008 * 110.72258 * 153.86405 * 12 11 10 15 15 N 1.46503 * 109.47218 * 190.02494 * 14 12 11 16 16 C 1.34769 * 119.99724 * 179.97438 * 15 14 12 17 17 O 1.21610 * 120.00506 * 0.02562 * 16 15 14 18 18 C 1.47103 * 119.99930 * 180.02562 * 16 15 14 19 19 C 1.32996 * 120.00121 * 180.02562 * 18 16 15 20 20 C 1.51578 * 135.77890 * 179.97438 * 19 18 16 21 21 C 1.53843 * 86.75571 * 205.15241 * 20 19 18 22 22 C 1.51866 * 135.78836 * 0.02562 * 19 18 16 23 23 C 1.47026 * 125.65190 * 179.97438 * 9 7 2 24 24 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.09005 * 110.36896 * 322.99904 * 10 9 7 26 26 H 1.09000 * 110.36846 * 85.32371 * 10 9 7 27 27 H 1.09008 * 111.00717 * 204.91267 * 11 10 9 28 28 H 1.09005 * 111.00760 * 81.06238 * 11 10 9 29 29 H 0.96690 * 114.00180 * 177.45004 * 13 12 11 30 30 H 1.09000 * 109.46962 * 70.02298 * 14 12 11 31 31 H 1.09000 * 109.47032 * 310.02604 * 14 12 11 32 32 H 0.97000 * 119.99790 * 0.02562 * 15 14 12 33 33 H 1.08007 * 119.99973 * 359.97438 * 18 16 15 34 34 H 1.09000 * 113.66387 * 90.68968 * 20 19 18 35 35 H 1.09001 * 113.75713 * 319.62554 * 20 19 18 36 36 H 1.09002 * 113.65913 * 89.69023 * 21 20 19 37 37 H 1.08998 * 113.65673 * 220.64232 * 21 20 19 38 38 H 1.09002 * 113.75816 * 40.40914 * 22 19 18 39 39 H 1.09001 * 113.66516 * 269.26079 * 22 19 18 40 40 H 1.09005 * 109.87762 * 59.48989 * 23 9 7 41 41 H 1.09003 * 109.87970 * 298.32932 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1415 -2.5331 0.0031 11 6 -0.4010 -3.9316 0.6167 12 6 0.7784 -4.7524 0.0315 13 8 0.4751 -5.2101 -1.2878 14 6 1.1240 -5.9303 0.9448 15 7 2.3794 -6.5409 0.5004 16 6 2.8830 -7.6025 1.1604 17 8 2.2953 -8.0539 2.1246 18 6 4.1438 -8.2153 0.7146 19 6 4.6406 -9.2632 1.3656 20 6 5.8644 -10.1470 1.2283 21 6 5.0514 -11.2356 1.9498 22 6 4.2273 -10.0936 2.5681 23 6 1.9318 -3.7275 0.0017 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5988 -1.7581 0.6182 26 1 -0.5282 -2.4879 -1.0150 27 1 -1.3588 -4.3325 0.2846 28 1 -0.3504 -3.8963 1.7050 29 1 1.1965 -5.6950 -1.7114 30 1 0.3248 -6.6703 0.9016 31 1 1.2354 -5.5753 1.9693 32 1 2.8484 -6.1807 -0.2685 33 1 4.6657 -7.8147 -0.1420 34 1 6.7248 -9.7943 1.7970 35 1 6.1118 -10.3973 0.1966 36 1 4.4784 -11.8726 1.2759 37 1 5.6300 -11.8024 2.6792 38 1 3.1580 -10.3001 2.6125 39 1 4.6288 -9.7260 3.5125 40 1 2.5594 -3.8502 0.8845 41 1 2.5271 -3.8651 -0.9010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733484797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:28 Heat of formation + Delta-G solvation = -42.097854 kcal Electronic energy + Delta-G solvation = -21838.927232 eV Core-core repulsion = 18526.746001 eV Total energy + Delta-G solvation = -3312.181231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13552 -40.07426 -38.99680 -36.80651 -35.31263 -33.99621 -32.11039 -31.24508 -29.59138 -27.51653 -26.71971 -25.56414 -23.88254 -22.39668 -21.52271 -21.34915 -19.57396 -18.91359 -18.21465 -17.60163 -16.88747 -16.76649 -16.48114 -16.22617 -15.71614 -15.54866 -15.41226 -15.04349 -14.80288 -14.46949 -13.91233 -13.65869 -13.34152 -13.30792 -12.93744 -12.88717 -12.80091 -12.59462 -12.38434 -12.09174 -11.99057 -11.88951 -11.80099 -11.64924 -11.46914 -10.96600 -10.76845 -10.70444 -10.34681 -9.96201 -8.92245 -7.78972 -5.24157 0.38537 1.46717 1.47858 1.58124 2.12658 2.31001 2.48127 3.14766 3.31158 3.37529 3.47331 3.57223 3.70259 3.84912 3.90689 3.93913 4.19233 4.28821 4.47179 4.58612 4.62138 4.65857 4.76369 4.77992 4.87670 4.93680 4.96131 4.97389 5.06070 5.07074 5.25910 5.34622 5.36730 5.45311 5.59443 5.66913 5.77950 6.27578 6.52957 6.78320 7.08022 7.22821 7.74959 8.38882 9.23508 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.003345 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.842195 B = 8368.286681 C = 8952.767243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.623 5.623 10 C 0.160 3.840 11 C -0.121 4.121 12 C 0.126 3.874 13 O -0.555 6.555 14 C 0.121 3.879 15 N -0.715 5.715 16 C 0.544 3.456 17 O -0.585 6.585 18 C -0.214 4.214 19 C -0.068 4.068 20 C -0.097 4.097 21 C -0.133 4.133 22 C -0.120 4.120 23 C 0.113 3.887 24 H 0.247 0.753 25 H 0.075 0.925 26 H -0.015 1.015 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.386 0.614 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.161 0.839 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.036 0.964 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.964 -20.965 0.817 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.811 3.189 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.349 5.349 10 C 0.035 3.965 11 C -0.160 4.160 12 C 0.084 3.916 13 O -0.362 6.362 14 C -0.004 4.004 15 N -0.367 5.367 16 C 0.335 3.665 17 O -0.467 6.467 18 C -0.234 4.234 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.170 4.170 22 C -0.157 4.157 23 C -0.012 4.012 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.003 0.997 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.235 0.765 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.249 0.751 33 H 0.179 0.821 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.054 0.946 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.956 -20.774 1.607 23.092 hybrid contribution 0.577 1.249 -0.589 1.497 sum 10.532 -19.525 1.018 22.208 Atomic orbital electron populations 1.70060 1.06342 1.25052 1.58531 1.25683 0.96648 1.01163 1.02635 0.84947 0.78143 0.79145 0.76693 1.18870 1.22015 1.21804 1.19507 0.91086 0.83609 1.42592 0.89828 1.44716 1.02560 1.00827 1.86835 1.21651 0.84271 0.94133 0.96430 1.22912 0.97400 0.95488 1.00196 1.22193 0.95455 0.91054 0.82894 1.86584 1.44510 1.76367 1.28730 1.21735 0.86568 0.94202 0.97924 1.45773 1.24932 1.32018 1.33988 1.18981 0.85763 0.79567 0.82155 1.90748 1.62932 1.63886 1.29179 1.21732 0.97127 0.98813 1.05753 1.24145 0.97350 0.90390 0.95085 1.22450 0.94632 0.93032 1.03205 1.22819 0.98255 0.95712 1.00225 1.22477 1.00906 0.95642 0.96658 1.22115 0.94770 0.85526 0.98823 0.94280 0.90696 0.99687 0.89597 0.89617 0.76501 0.90539 0.91398 0.75139 0.82123 0.86521 0.88519 0.89620 0.88828 0.91965 0.88322 0.94574 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 10.09 21.65 0.22 -57.11 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 3 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.24 -13.40 10.27 84.04 0.86 -12.53 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.62 -32.19 3.39 -691.97 -2.35 -34.54 16 10 C 0.16 8.15 5.88 86.85 0.51 8.66 16 11 C -0.12 -4.67 6.26 31.98 0.20 -4.47 16 12 C 0.13 4.19 0.93 -9.61 -0.01 4.18 16 13 O -0.55 -17.59 13.10 -148.98 -1.95 -19.54 16 14 C 0.12 3.46 4.80 86.38 0.41 3.87 16 15 N -0.72 -17.12 5.13 -466.71 -2.39 -19.52 16 16 C 0.54 14.41 7.76 86.57 0.67 15.08 16 17 O -0.59 -19.97 15.11 -4.06 -0.06 -20.03 16 18 C -0.21 -4.13 10.03 23.43 0.23 -3.90 16 19 C -0.07 -1.21 6.88 -17.02 -0.12 -1.33 16 20 C -0.10 -1.01 8.05 30.41 0.24 -0.76 16 21 C -0.13 -1.52 8.10 31.09 0.25 -1.27 16 22 C -0.12 -2.21 7.07 30.49 0.22 -2.00 16 23 C 0.11 4.44 5.76 86.73 0.50 4.94 16 24 H 0.25 14.45 8.31 -92.71 -0.77 13.67 16 25 H 0.08 4.31 5.87 -2.38 -0.01 4.29 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 28 H 0.09 3.13 7.96 -2.38 -0.02 3.11 16 29 H 0.39 8.59 8.44 -74.06 -0.62 7.96 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 32 H 0.41 7.76 7.45 -92.71 -0.69 7.07 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 1.46 7.50 -2.39 -0.02 1.44 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.40 7.82 -2.38 -0.02 1.38 16 41 H 0.04 1.35 8.07 -2.39 -0.02 1.33 16 Total: -1.00 -73.95 335.46 -0.34 -74.29 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.28 Total: 21.71 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 4.45 Total: 7.01 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.52 Total: -111.17 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -2.01 Total: -39.57 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.95 -0.34 -74.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733484797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.189 kcal (2) G-P(sol) polarization free energy of solvation -73.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds