Wall clock time and date at job start Tue Mar 31 2020 02:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99751 * 2 1 4 4 H 1.48505 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47044 * 299.99632 * 3 2 1 6 6 H 1.48495 * 109.47253 * 59.99723 * 3 2 1 7 7 C 1.38809 * 120.00011 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99638 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49573 * 180.02562 * 9 7 2 11 11 C 1.53936 * 86.11800 * 155.36138 * 10 9 7 12 12 O 1.42904 * 113.73918 * 269.15249 * 11 10 9 13 13 C 1.52996 * 113.74228 * 137.95623 * 11 10 9 14 14 N 1.46506 * 109.47126 * 184.99703 * 13 11 10 15 15 C 1.34781 * 119.99647 * 179.97438 * 14 13 11 16 16 O 1.21275 * 120.00234 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99411 * 179.97438 * 15 14 13 18 18 H 1.09000 * 115.58163 * 325.77399 * 17 15 14 19 19 C 1.53126 * 117.51488 * 111.54177 * 17 15 14 20 20 C 1.52459 * 117.51175 * 180.02562 * 17 15 14 21 21 C 1.53260 * 128.58747 * 134.95397 * 20 17 15 22 22 C 1.53889 * 86.97989 * 194.93106 * 21 20 17 23 23 C 1.53447 * 128.65734 * 10.17735 * 20 17 15 24 24 C 1.47578 * 134.48912 * 0.02562 * 9 7 2 25 25 H 0.97000 * 119.99647 * 0.02562 * 1 2 3 26 26 H 1.09002 * 113.76818 * 41.05406 * 10 9 7 27 27 H 1.09007 * 113.86677 * 269.67364 * 10 9 7 28 28 H 0.96699 * 114.00109 * 178.07863 * 12 11 10 29 29 H 1.09000 * 109.47594 * 64.99723 * 13 11 10 30 30 H 1.09002 * 109.46927 * 304.99150 * 13 11 10 31 31 H 0.96993 * 119.99657 * 0.02562 * 14 13 11 32 32 H 1.09004 * 117.50883 * 359.97438 * 19 17 15 33 33 H 1.08991 * 117.55075 * 214.88282 * 19 17 15 34 34 H 1.09002 * 113.64852 * 80.38772 * 21 20 17 35 35 H 1.08999 * 113.64512 * 309.47402 * 21 20 17 36 36 H 1.09005 * 113.58717 * 139.53029 * 22 21 20 37 37 H 1.08999 * 113.59117 * 270.34026 * 22 21 20 38 38 H 1.08995 * 113.56108 * 50.51775 * 23 20 17 39 39 H 1.09000 * 113.78120 * 279.55299 * 23 20 17 40 40 H 1.09004 * 113.77137 * 90.34156 * 24 9 7 41 41 H 1.09003 * 113.77360 * 318.93800 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8101 0.0015 11 6 0.3466 -4.0826 0.6408 12 8 0.3618 -4.0571 2.0695 13 6 -0.3634 -5.3136 0.0739 14 7 -1.7031 -5.4168 0.6580 15 6 -2.5166 -6.4310 0.3029 16 8 -2.1396 -7.2584 -0.4997 17 6 -3.8943 -6.5375 0.9042 18 1 -3.9835 -6.2052 1.9385 19 6 -5.0905 -6.2979 -0.0213 20 6 -4.7668 -7.7073 0.4629 21 6 -5.6219 -8.6412 1.3265 22 6 -5.6944 -9.5725 0.1036 23 6 -4.3732 -8.9378 -0.3651 24 6 -0.1032 -2.7573 -0.0004 25 1 -0.4849 0.8401 -0.0004 26 1 2.5620 -4.0321 0.6574 27 1 1.8334 -4.2371 -0.9951 28 1 -0.5047 -4.1987 2.4747 29 1 0.2093 -6.2082 0.3182 30 1 -0.4456 -5.2190 -1.0089 31 1 -2.0047 -4.7549 1.2996 32 1 -4.8806 -6.0628 -1.0648 33 1 -5.9666 -5.8083 0.4038 34 1 -6.5846 -8.2155 1.6095 35 1 -5.0834 -9.0702 2.1715 36 1 -5.6056 -10.6296 0.3545 37 1 -6.5371 -9.3627 -0.5552 38 1 -3.4859 -9.4487 0.0086 39 1 -4.3343 -8.7514 -1.4383 40 1 -0.5263 -2.8735 -0.9982 41 1 -0.7174 -2.1388 0.6541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733508577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:07 Heat of formation + Delta-G solvation = 23.603188 kcal Electronic energy + Delta-G solvation = -21887.548843 eV Core-core repulsion = 18578.216622 eV Total energy + Delta-G solvation = -3309.332220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43800 -39.16851 -38.08046 -34.87635 -33.95038 -33.77886 -31.98039 -28.70596 -26.32496 -25.82294 -25.01946 -23.76172 -23.22756 -21.75898 -20.29591 -19.33041 -18.60275 -17.49216 -16.72938 -16.29801 -15.59602 -15.41478 -15.31402 -15.02113 -14.64051 -14.17669 -13.95363 -13.49854 -13.21155 -12.81261 -12.68761 -12.48755 -12.25943 -12.17970 -11.77551 -11.72226 -11.59668 -11.07555 -10.94492 -10.75780 -10.52210 -10.40306 -10.25408 -9.95498 -9.94544 -9.63095 -9.46387 -9.21409 -8.90003 -8.83263 -6.90580 -5.78155 -3.09826 2.54066 3.13448 3.38952 3.44173 3.46735 3.62198 4.21952 4.42814 4.43165 4.52127 4.59660 4.61069 4.71260 4.92974 5.08230 5.17911 5.21983 5.29038 5.39625 5.49980 5.52827 5.58250 5.62724 5.69104 5.76173 5.79740 5.98816 6.05173 6.13404 6.23603 6.30059 6.42756 6.54001 6.57575 7.00585 7.16162 7.49624 7.54943 7.95284 8.12046 8.30848 9.02942 9.69191 10.55317 11.39248 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037654 B = 0.003231 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.440135 B = 8662.957785 C = 8997.832441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.218 4.218 8 H 0.082 0.918 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.064 3.936 12 O -0.526 6.526 13 C 0.104 3.896 14 N -0.721 5.721 15 C 0.543 3.457 16 O -0.539 6.539 17 C -0.179 4.179 18 H 0.123 0.877 19 C -0.121 4.121 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.082 4.082 24 C 0.145 3.855 25 H 0.252 0.748 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.362 0.638 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.399 0.601 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.239 -15.977 2.804 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.009 3.991 11 C 0.021 3.979 12 O -0.330 6.330 13 C -0.021 4.021 14 N -0.373 5.373 15 C 0.329 3.671 16 O -0.416 6.416 17 C -0.200 4.200 18 H 0.141 0.859 19 C -0.158 4.158 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.180 4.180 23 C -0.119 4.119 24 C 0.019 3.981 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.208 0.792 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.233 0.767 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.233 -16.094 2.118 19.740 hybrid contribution -0.232 1.374 0.355 1.438 sum -11.466 -14.719 2.473 18.821 Atomic orbital electron populations 1.69813 1.05025 1.25176 1.57008 1.24774 0.95724 0.97542 1.02492 0.86014 0.78759 0.83583 0.77218 1.20432 1.21767 1.21696 1.19050 0.90328 0.81721 1.43427 0.90059 1.45669 1.01998 0.99172 1.85977 1.22551 0.93408 0.86637 0.96506 1.23744 0.99156 0.93401 0.81609 1.86617 1.33556 1.95167 1.17653 1.22030 0.81905 0.99189 0.98951 1.45896 1.16104 1.28589 1.46736 1.19598 0.85317 0.80819 0.81326 1.90677 1.75747 1.40851 1.34308 1.22162 0.90322 1.06840 1.00701 0.85933 1.22804 0.96883 0.96553 0.99570 1.22320 1.00070 0.89079 1.01342 1.22502 0.98744 0.95644 0.96721 1.22814 0.98621 0.98737 0.97832 1.22347 0.96826 0.93220 0.99537 1.22891 0.88911 0.89177 0.97149 0.93759 0.92678 0.93251 0.79241 0.91243 0.90405 0.76660 0.87963 0.87583 0.91295 0.89659 0.91332 0.90196 0.89478 0.91274 0.94869 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 11.38 55.49 0.63 -26.66 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.22 -6.21 10.70 -15.06 -0.16 -6.38 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.83 16 9 N -0.60 -15.64 3.70 -177.83 -0.66 -16.30 16 10 C 0.14 2.83 8.34 -2.98 -0.02 2.80 16 11 C 0.06 1.17 1.52 -89.70 -0.14 1.04 16 12 O -0.53 -9.64 13.51 -35.23 -0.48 -10.11 16 13 C 0.10 1.61 5.28 -4.04 -0.02 1.59 16 14 N -0.72 -9.51 5.34 -60.29 -0.32 -9.83 16 15 C 0.54 7.46 7.61 -10.98 -0.08 7.38 16 16 O -0.54 -9.13 15.15 5.56 0.08 -9.04 16 17 C -0.18 -1.88 6.19 -91.98 -0.57 -2.45 16 18 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.12 -1.15 10.24 -26.92 -0.28 -1.42 16 20 C -0.13 -1.27 2.89 -154.67 -0.45 -1.71 16 21 C -0.10 -0.78 8.09 -26.13 -0.21 -0.99 16 22 C -0.14 -1.13 8.08 -25.81 -0.21 -1.34 16 23 C -0.08 -0.87 6.49 -26.04 -0.17 -1.03 16 24 C 0.14 3.32 6.92 -2.98 -0.02 3.30 16 25 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.95 8.10 -51.92 -0.42 0.53 16 28 H 0.36 4.93 7.61 45.56 0.35 5.28 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 31 H 0.40 4.46 7.31 -40.82 -0.30 4.16 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.01 8.05 -51.93 -0.42 0.60 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.78 8.03 -51.93 -0.42 0.36 16 41 H 0.08 1.97 7.15 -51.93 -0.37 1.60 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -33.97 339.64 -8.84 -42.81 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.77 Total: 6.28 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.42 Total: 0.41 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.35 Total: -52.79 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.39 Total: -19.16 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.97 -8.84 -42.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733508577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.411 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds