Wall clock time and date at job start Tue Mar 31 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48504 * 109.46676 * 239.99841 * 3 2 1 5 5 H 1.48495 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46812 * 120.00287 * 3 2 1 7 7 C 1.38814 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99871 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46835 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.51177 * 304.89458 * 11 10 9 13 13 C 1.52875 * 109.58293 * 184.87757 * 11 10 9 14 14 N 1.47151 * 108.61218 * 187.92329 * 13 11 10 15 15 C 1.34774 * 120.98371 * 230.50633 * 14 13 11 16 16 O 1.21614 * 120.00046 * 4.94139 * 15 14 13 17 17 C 1.47098 * 119.99991 * 184.66446 * 15 14 13 18 18 C 1.32987 * 120.00259 * 175.05175 * 17 15 14 19 19 C 1.51403 * 136.31701 * 359.63094 * 18 17 15 20 20 C 1.53371 * 87.52379 * 206.05601 * 19 18 17 21 21 C 1.51409 * 136.32067 * 180.02562 * 18 17 15 22 22 C 1.47157 * 118.03062 * 50.22486 * 14 13 11 23 23 C 1.53291 * 108.38752 * 309.71943 * 22 14 13 24 24 O 1.42958 * 109.22229 * 52.30158 * 23 22 14 25 25 H 0.96995 * 120.00041 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99833 * 359.97438 * 9 7 2 27 27 H 1.08993 * 109.47484 * 59.99845 * 10 9 7 28 28 H 1.09008 * 109.47155 * 299.99287 * 10 9 7 29 29 H 1.09004 * 109.61870 * 68.10284 * 13 11 10 30 30 H 1.09003 * 109.52939 * 307.68895 * 13 11 10 31 31 H 1.08006 * 119.99938 * 355.05587 * 17 15 14 32 32 H 1.09010 * 113.56146 * 320.64075 * 19 18 17 33 33 H 1.08995 * 113.56197 * 91.36806 * 19 18 17 34 34 H 1.08994 * 113.97473 * 220.29291 * 20 19 18 35 35 H 1.09008 * 113.71076 * 88.80351 * 20 19 18 36 36 H 1.09004 * 113.56149 * 268.63335 * 21 18 17 37 37 H 1.09004 * 113.56104 * 39.36052 * 21 18 17 38 38 H 1.08996 * 109.67916 * 69.44758 * 22 14 13 39 39 H 1.09007 * 109.68075 * 189.95912 * 22 14 13 40 40 H 1.09002 * 109.51352 * 172.22570 * 23 22 14 41 41 H 1.09001 * 109.51472 * 292.32916 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8198 0.0021 12 1 0.3802 -4.7140 0.8444 13 6 1.8215 -6.1417 0.1257 14 7 0.8706 -7.2480 -0.0672 15 6 0.8026 -8.2660 0.8134 16 8 1.4687 -8.2357 1.8305 17 6 -0.0818 -9.4109 0.5472 18 6 -0.0761 -10.4597 1.3648 19 6 0.6620 -10.8625 2.6239 20 6 0.4153 -12.3219 2.2219 21 6 -0.7996 -11.7871 1.4481 22 6 -0.0084 -7.2066 -1.2467 23 6 -0.6807 -5.8301 -1.3007 24 8 0.3211 -4.8135 -1.2195 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6840 -3.7142 0.8921 28 1 2.6854 -3.7150 -0.8879 29 1 2.2727 -6.2138 1.1154 30 1 2.5990 -6.1888 -0.6369 31 1 -0.7357 -9.3997 -0.3123 32 1 1.7157 -10.5832 2.6196 33 1 0.1504 -10.5708 3.5411 34 1 0.1544 -12.9730 3.0562 35 1 1.1948 -12.7386 1.5839 36 1 -1.7126 -11.7492 2.0424 37 1 -0.9445 -12.2659 0.4796 38 1 0.5816 -7.3627 -2.1498 39 1 -0.7682 -7.9840 -1.1657 40 1 -1.2275 -5.7284 -2.2381 41 1 -1.3715 -5.7292 -0.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733731508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:19 Heat of formation + Delta-G solvation = -14.727711 kcal Electronic energy + Delta-G solvation = -21721.250343 eV Core-core repulsion = 18410.255970 eV Total energy + Delta-G solvation = -3310.994373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39592 -39.06497 -37.92085 -34.99850 -34.33950 -32.34005 -31.15244 -30.04928 -28.02414 -26.10280 -25.76739 -23.54502 -23.46100 -22.21576 -20.89606 -19.77818 -18.00529 -17.57215 -17.04383 -16.45641 -15.96609 -15.80823 -15.28152 -15.10376 -14.75891 -14.37575 -14.35271 -13.87165 -13.27596 -13.10838 -12.78120 -12.73123 -12.45406 -12.29282 -12.17493 -11.90096 -11.56946 -11.25296 -10.96818 -10.85943 -10.81488 -10.75536 -10.41478 -10.06692 -9.86537 -9.73200 -9.60197 -9.46565 -8.83228 -8.46133 -6.86171 -5.69783 -2.98431 1.14608 2.82058 3.18646 3.48865 3.52450 3.53975 3.93888 3.99342 4.15691 4.41373 4.60340 4.66311 4.77320 4.78983 4.97518 5.07930 5.17922 5.18391 5.30297 5.34561 5.37314 5.47941 5.51140 5.62823 5.67025 5.70416 5.75166 5.87460 5.91278 5.96377 6.00247 6.29685 6.30579 6.44354 6.60019 6.73253 7.33007 7.49788 7.74305 8.12789 8.48417 9.59870 10.17218 10.53180 11.53093 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040273 B = 0.003013 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.093588 B = 9289.999480 C = 9618.543852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.164 3.836 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.086 3.914 14 N -0.611 5.611 15 C 0.553 3.447 16 O -0.542 6.542 17 C -0.201 4.201 18 C -0.062 4.062 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.108 4.108 22 C 0.072 3.928 23 C 0.045 3.955 24 O -0.358 6.358 25 H 0.255 0.745 26 H 0.387 0.613 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -25.534 -0.316 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.015 3.985 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.345 5.345 15 C 0.344 3.656 16 O -0.421 6.421 17 C -0.221 4.221 18 C -0.064 4.064 19 C -0.142 4.142 20 C -0.180 4.180 21 C -0.145 4.145 22 C -0.051 4.051 23 C -0.033 4.033 24 O -0.276 6.276 25 H 0.065 0.935 26 H 0.221 0.779 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.455 -25.250 0.074 25.370 hybrid contribution -0.048 0.769 -0.074 0.775 sum -2.503 -24.481 0.000 24.609 Atomic orbital electron populations 1.69664 1.05124 1.25670 1.57686 1.24745 0.95529 0.97673 1.03067 0.86244 0.78480 0.83492 0.77831 1.21265 1.21722 1.21283 1.19189 0.90996 0.84102 1.42750 0.91182 1.42225 1.06011 0.99504 1.89359 1.20617 0.92406 0.84636 0.98795 1.22716 0.94222 0.94302 0.87285 0.91898 1.22238 0.91805 0.85439 1.04198 1.48023 1.38776 1.22742 1.24954 1.18403 0.82223 0.82388 0.82611 1.90768 1.45751 1.79416 1.26122 1.21661 1.03821 0.93500 1.03166 1.23487 0.94849 0.92788 0.95266 1.22220 1.01980 0.94173 0.95860 1.22732 0.98048 0.96697 1.00561 1.22355 0.98187 0.92410 1.01550 1.22565 0.94427 0.99640 0.88510 1.22920 0.90929 0.86541 1.02912 1.88154 1.49514 1.52019 1.37934 0.93520 0.77913 0.94652 0.95272 0.88005 0.90510 0.84767 0.89615 0.88292 0.90369 0.89759 0.88047 0.90385 0.90437 0.88947 0.87781 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.06 55.49 0.72 -28.33 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -19.39 5.55 -59.90 -0.33 -19.72 16 10 C 0.16 3.47 5.93 -4.04 -0.02 3.44 16 11 C 0.07 1.31 2.80 -26.79 -0.07 1.24 16 12 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 13 C 0.09 1.31 5.92 -3.75 -0.02 1.28 16 14 N -0.61 -8.27 3.03 -173.92 -0.53 -8.80 16 15 C 0.55 7.79 7.65 -12.67 -0.10 7.69 16 16 O -0.54 -9.33 14.70 5.27 0.08 -9.26 16 17 C -0.20 -2.12 9.33 -37.81 -0.35 -2.47 16 18 C -0.06 -0.60 6.93 -100.48 -0.70 -1.29 16 19 C -0.11 -0.99 6.95 -27.56 -0.19 -1.19 16 20 C -0.14 -0.94 8.17 -26.21 -0.21 -1.16 16 21 C -0.11 -0.70 7.95 -27.41 -0.22 -0.92 16 22 C 0.07 0.76 6.51 -3.53 -0.02 0.73 16 23 C 0.05 0.58 6.98 37.31 0.26 0.84 16 24 O -0.36 -6.42 10.33 -35.23 -0.36 -6.78 16 25 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.39 10.96 7.67 -40.82 -0.31 10.64 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.10 1.62 7.06 -51.93 -0.37 1.25 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.13 1.04 5.98 -52.48 -0.31 0.73 16 32 H 0.09 0.97 7.59 -51.92 -0.39 0.57 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.70 5.50 -51.93 -0.29 0.41 16 40 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -34.71 335.79 -8.58 -43.28 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.29 Total: 6.04 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.90 Total: 0.60 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.13 Total: -56.85 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.29 Total: -16.04 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.71 -8.58 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733731508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.554 kcal (2) G-P(sol) polarization free energy of solvation -34.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds