Wall clock time and date at job start Tue Mar 31 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99984 * 2 1 4 4 H 1.48504 * 109.46676 * 239.99841 * 3 2 1 5 5 H 1.48495 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46812 * 120.00287 * 3 2 1 7 7 C 1.38814 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99645 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00382 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99871 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46835 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.51177 * 304.89458 * 11 10 9 13 13 C 1.52875 * 109.58293 * 184.87757 * 11 10 9 14 14 N 1.47151 * 108.61218 * 187.92329 * 13 11 10 15 15 C 1.34774 * 120.98371 * 230.50633 * 14 13 11 16 16 O 1.21614 * 120.00046 * 4.94139 * 15 14 13 17 17 C 1.47098 * 119.99991 * 184.66446 * 15 14 13 18 18 C 1.32987 * 120.00259 * 175.05175 * 17 15 14 19 19 C 1.51403 * 136.31701 * 359.63094 * 18 17 15 20 20 C 1.53371 * 87.52379 * 206.05601 * 19 18 17 21 21 C 1.51409 * 136.32067 * 180.02562 * 18 17 15 22 22 C 1.47157 * 118.03062 * 50.22486 * 14 13 11 23 23 C 1.53291 * 108.38752 * 309.71943 * 22 14 13 24 24 O 1.42958 * 109.22229 * 52.30158 * 23 22 14 25 25 H 0.96995 * 120.00041 * 0.02562 * 1 2 3 26 26 H 0.96998 * 119.99833 * 359.97438 * 9 7 2 27 27 H 1.08993 * 109.47484 * 59.99845 * 10 9 7 28 28 H 1.09008 * 109.47155 * 299.99287 * 10 9 7 29 29 H 1.09004 * 109.61870 * 68.10284 * 13 11 10 30 30 H 1.09003 * 109.52939 * 307.68895 * 13 11 10 31 31 H 1.08006 * 119.99938 * 355.05587 * 17 15 14 32 32 H 1.09010 * 113.56146 * 320.64075 * 19 18 17 33 33 H 1.08995 * 113.56197 * 91.36806 * 19 18 17 34 34 H 1.08994 * 113.97473 * 220.29291 * 20 19 18 35 35 H 1.09008 * 113.71076 * 88.80351 * 20 19 18 36 36 H 1.09004 * 113.56149 * 268.63335 * 21 18 17 37 37 H 1.09004 * 113.56104 * 39.36052 * 21 18 17 38 38 H 1.08996 * 109.67916 * 69.44758 * 22 14 13 39 39 H 1.09007 * 109.68075 * 189.95912 * 22 14 13 40 40 H 1.09002 * 109.51352 * 172.22570 * 23 22 14 41 41 H 1.09001 * 109.51472 * 292.32916 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0638 -4.8198 0.0021 12 1 0.3802 -4.7140 0.8444 13 6 1.8215 -6.1417 0.1257 14 7 0.8706 -7.2480 -0.0672 15 6 0.8026 -8.2660 0.8134 16 8 1.4687 -8.2357 1.8305 17 6 -0.0818 -9.4109 0.5472 18 6 -0.0761 -10.4597 1.3648 19 6 0.6620 -10.8625 2.6239 20 6 0.4153 -12.3219 2.2219 21 6 -0.7996 -11.7871 1.4481 22 6 -0.0084 -7.2066 -1.2467 23 6 -0.6807 -5.8301 -1.3007 24 8 0.3211 -4.8135 -1.2195 25 1 -0.4850 0.8400 -0.0004 26 1 0.3555 -2.3881 0.0005 27 1 2.6840 -3.7142 0.8921 28 1 2.6854 -3.7150 -0.8879 29 1 2.2727 -6.2138 1.1154 30 1 2.5990 -6.1888 -0.6369 31 1 -0.7357 -9.3997 -0.3123 32 1 1.7157 -10.5832 2.6196 33 1 0.1504 -10.5708 3.5411 34 1 0.1544 -12.9730 3.0562 35 1 1.1948 -12.7386 1.5839 36 1 -1.7126 -11.7492 2.0424 37 1 -0.9445 -12.2659 0.4796 38 1 0.5816 -7.3627 -2.1498 39 1 -0.7682 -7.9840 -1.1657 40 1 -1.2275 -5.7284 -2.2381 41 1 -1.3715 -5.7292 -0.4635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733731508.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:19 Heat of formation + Delta-G solvation = -38.712663 kcal Electronic energy + Delta-G solvation = -21722.290408 eV Core-core repulsion = 18410.255970 eV Total energy + Delta-G solvation = -3312.034438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47712 -39.96577 -38.94571 -36.67876 -35.73574 -34.00383 -32.37262 -31.45944 -29.28343 -27.37451 -26.67758 -25.12213 -24.41224 -23.53235 -22.31730 -20.73591 -19.26883 -18.81032 -18.50041 -17.68134 -17.07844 -16.71247 -16.59193 -16.24779 -15.99457 -15.80704 -15.42518 -15.17654 -15.01006 -14.43579 -14.32696 -14.01216 -13.43196 -13.34465 -13.05301 -12.95201 -12.76466 -12.68414 -12.53768 -12.28673 -12.09419 -11.92815 -11.84601 -11.65204 -11.46459 -11.18184 -10.96338 -10.66845 -10.25194 -9.58200 -9.02999 -7.94934 -5.25076 0.32021 1.46924 1.51350 1.57271 1.79636 2.20557 2.56027 2.73426 3.21935 3.38586 3.51335 3.56389 3.79330 3.85063 3.91286 4.00668 4.04549 4.19015 4.25295 4.34205 4.40637 4.49506 4.59088 4.64011 4.72615 4.74222 4.84825 4.86988 4.91088 4.93158 5.04383 5.06267 5.17679 5.30955 5.34741 5.46885 5.64594 6.21257 6.26082 6.33172 7.07477 7.32067 8.05204 8.30604 9.28750 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.040273 B = 0.003013 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.093588 B = 9289.999480 C = 9618.543852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.741 5.741 10 C 0.161 3.839 11 C 0.089 3.911 12 H 0.044 0.956 13 C 0.096 3.904 14 N -0.614 5.614 15 C 0.544 3.456 16 O -0.586 6.586 17 C -0.215 4.215 18 C -0.065 4.065 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.093 4.093 22 C 0.076 3.924 23 C 0.036 3.964 24 O -0.388 6.388 25 H 0.252 0.748 26 H 0.374 0.626 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 -27.557 -1.309 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.096 0.904 9 N -0.384 5.384 10 C 0.034 3.966 11 C 0.030 3.970 12 H 0.062 0.938 13 C -0.028 4.028 14 N -0.347 5.347 15 C 0.337 3.663 16 O -0.468 6.468 17 C -0.235 4.235 18 C -0.067 4.067 19 C -0.159 4.159 20 C -0.170 4.170 21 C -0.130 4.130 22 C -0.046 4.046 23 C -0.041 4.041 24 O -0.307 6.307 25 H 0.061 0.939 26 H 0.206 0.794 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.185 0.815 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.914 -27.315 -0.943 27.486 hybrid contribution 0.105 1.312 0.266 1.343 sum -2.809 -26.003 -0.677 26.163 Atomic orbital electron populations 1.69836 1.06763 1.26233 1.59258 1.25653 0.96480 1.01340 1.03450 0.85127 0.77142 0.78679 0.78282 1.20201 1.21987 1.20254 1.19643 0.91610 0.85215 1.41694 0.90383 1.42418 1.05649 1.00873 1.89423 1.20752 0.93070 0.83909 0.98871 1.22351 0.93401 0.94292 0.86975 0.93839 1.21957 0.92081 0.84932 1.03853 1.48135 1.38735 1.21958 1.25837 1.19117 0.82131 0.83184 0.81860 1.90744 1.47702 1.80397 1.27949 1.21715 1.04306 0.92380 1.05075 1.23980 0.94592 0.93693 0.94427 1.22358 1.00366 0.96872 0.96332 1.22726 0.98296 0.94851 1.01166 1.22393 0.98196 0.89647 1.02757 1.22750 0.94909 0.99143 0.87772 1.23255 0.90067 0.86663 1.04088 1.88089 1.50749 1.54428 1.37410 0.93935 0.79380 0.94014 0.95011 0.89300 0.89465 0.81537 0.92427 0.88325 0.88604 0.89515 0.86363 0.88353 0.88947 0.85213 0.85158 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.62 13.06 21.65 0.28 -61.34 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 9 N -0.74 -40.48 5.55 -343.44 -1.91 -42.39 16 10 C 0.16 6.96 5.93 86.38 0.51 7.47 16 11 C 0.09 3.24 2.80 30.55 0.09 3.32 16 12 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 13 C 0.10 2.93 5.92 86.21 0.51 3.44 16 14 N -0.61 -16.08 3.03 -822.42 -2.49 -18.57 16 15 C 0.54 15.09 7.65 86.57 0.66 15.76 16 16 O -0.59 -20.86 14.70 -4.07 -0.06 -20.92 16 17 C -0.21 -4.08 9.33 23.43 0.22 -3.86 16 18 C -0.06 -1.12 6.93 -17.17 -0.12 -1.24 16 19 C -0.12 -2.24 6.95 30.05 0.21 -2.03 16 20 C -0.13 -1.44 8.17 30.93 0.25 -1.18 16 21 C -0.09 -0.87 7.95 30.15 0.24 -0.63 16 22 C 0.08 1.41 6.51 86.35 0.56 1.97 16 23 C 0.04 0.87 6.98 72.08 0.50 1.38 16 24 O -0.39 -13.88 10.33 -148.98 -1.54 -15.42 16 25 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.37 21.95 7.67 -92.71 -0.71 21.24 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.09 2.94 7.06 -2.38 -0.02 2.93 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.17 1.91 5.98 -2.91 -0.02 1.89 16 32 H 0.06 1.37 7.59 -2.38 -0.02 1.35 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.13 1.44 5.50 -2.38 -0.01 1.42 16 40 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.27 335.79 1.58 -75.70 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.32 Total: 27.03 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 4.94 Total: 6.44 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -4.11 Total: -122.30 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.60 Total: -36.34 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -77.27 1.58 -75.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733731508.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.985 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds