Wall clock time and date at job start Tue Mar 31 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 N 1.46500 * 109.47135 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99786 * 180.02562 * 12 11 10 14 14 O 1.21611 * 119.99906 * 359.97438 * 13 12 11 15 15 C 1.47098 * 119.99772 * 179.97438 * 13 12 11 16 16 C 1.32086 * 118.87553 * 179.73302 * 15 13 12 17 17 C 1.50269 * 122.57909 * 180.11103 * 16 15 13 18 18 O 1.42889 * 110.14670 * 344.83374 * 17 16 15 19 19 C 1.43275 * 113.10333 * 50.31812 * 18 17 16 20 20 C 1.50422 * 118.87975 * 0.02562 * 15 13 12 21 21 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 22 22 C 1.53000 * 117.49921 * 3.23472 * 21 9 7 23 23 C 1.52998 * 117.49703 * 294.57074 * 21 9 7 24 24 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 25 25 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 26 26 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 27 27 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 28 28 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 29 29 H 0.96999 * 120.00006 * 359.97438 * 12 11 10 30 30 H 1.07997 * 118.71461 * 0.37058 * 16 15 13 31 31 H 1.09002 * 109.50941 * 224.51797 * 17 16 15 32 32 H 1.08998 * 109.07003 * 104.86974 * 17 16 15 33 33 H 1.08991 * 109.64073 * 171.47192 * 19 18 17 34 34 H 1.08998 * 109.63243 * 50.85251 * 19 18 17 35 35 H 1.09006 * 109.45031 * 283.37475 * 20 15 13 36 36 H 1.08998 * 109.45275 * 43.30628 * 20 15 13 37 37 H 1.09004 * 115.54877 * 148.90350 * 21 9 7 38 38 H 1.08998 * 117.50153 * 359.97438 * 22 21 9 39 39 H 1.08995 * 117.49708 * 145.02504 * 22 21 9 40 40 H 1.08995 * 117.49988 * 214.98174 * 23 21 9 41 41 H 1.08997 * 117.49880 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 7 0.2335 -2.4045 3.9868 13 6 0.6645 -2.5434 5.2563 14 8 1.8464 -2.7215 5.4811 15 6 -0.2945 -2.4797 6.3698 16 6 0.1513 -2.6240 7.6047 17 6 -0.7544 -2.5758 8.8028 18 8 -2.0196 -2.0189 8.4412 19 6 -2.5950 -2.6357 7.2830 20 6 -1.7505 -2.2591 6.0628 21 6 1.7039 -3.6309 -0.1884 22 6 2.7655 -3.6431 -1.2902 23 6 1.2873 -3.8149 -1.6490 24 1 -0.4849 0.8379 0.0599 25 1 -0.0520 -1.3115 1.5493 26 1 -0.2968 -3.0711 1.4393 27 1 1.6864 -3.4373 2.8821 28 1 1.9312 -1.6776 2.9921 29 1 -0.7091 -2.2622 3.8075 30 1 1.2089 -2.7785 7.7598 31 1 -0.2981 -1.9623 9.5797 32 1 -0.8996 -3.5880 9.1804 33 1 -3.6156 -2.2785 7.1467 34 1 -2.5962 -3.7186 7.4072 35 1 -1.9148 -1.2097 5.8178 36 1 -2.0407 -2.8793 5.2148 37 1 1.6465 -4.5015 0.4649 38 1 3.2380 -2.6944 -1.5444 39 1 3.4061 -4.5220 -1.3619 40 1 0.9562 -4.8067 -1.9568 41 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753153902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:20 Heat of formation + Delta-G solvation = -39.931418 kcal Electronic energy + Delta-G solvation = -21894.084205 eV Core-core repulsion = 18581.996917 eV Total energy + Delta-G solvation = -3312.087287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25237 -39.71462 -38.84140 -36.40847 -35.12628 -34.69011 -32.70620 -31.99830 -29.58766 -27.18192 -26.16998 -24.74270 -23.51675 -22.92715 -22.27673 -21.58294 -19.61177 -18.65914 -18.11521 -17.50043 -17.30321 -16.84898 -16.50665 -16.36989 -15.99202 -15.90957 -15.65344 -14.76860 -14.67545 -14.49304 -14.37275 -13.79772 -13.62928 -13.47588 -13.25363 -12.97019 -12.65363 -12.55725 -12.47617 -12.14517 -11.94682 -11.84300 -11.69186 -11.40876 -11.24045 -10.94329 -10.58870 -10.52864 -10.27791 -9.98240 -8.60633 -7.87104 -5.50879 0.26623 1.39649 1.45105 1.53502 2.11035 2.19041 2.47267 2.94533 3.11235 3.38047 3.48436 3.65203 3.71372 3.87012 4.26705 4.27901 4.30511 4.32711 4.37869 4.45608 4.49277 4.54188 4.58559 4.70515 4.75767 4.82797 4.93089 4.97257 5.02156 5.18048 5.23234 5.30044 5.40843 5.47921 5.53244 5.64311 5.72880 6.11668 6.39393 6.54272 7.08277 7.17376 7.77684 8.26744 9.05088 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.018792 B = 0.004101 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.664607 B = 6826.665313 C = 7456.769626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.030 4.030 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.263 4.263 8 H 0.059 0.941 9 N -0.565 5.565 10 C 0.144 3.856 11 C 0.120 3.880 12 N -0.706 5.706 13 C 0.539 3.461 14 O -0.595 6.595 15 C -0.180 4.180 16 C -0.109 4.109 17 C 0.088 3.912 18 O -0.395 6.395 19 C 0.061 3.939 20 C -0.120 4.120 21 C 0.097 3.903 22 C -0.184 4.184 23 C -0.210 4.210 24 H 0.253 0.747 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.031 0.969 29 H 0.412 0.588 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 -7.775 13.641 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.228 4.228 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.077 0.923 9 N -0.283 5.283 10 C 0.017 3.983 11 C -0.007 4.007 12 N -0.356 5.356 13 C 0.328 3.672 14 O -0.478 6.478 15 C -0.183 4.183 16 C -0.129 4.129 17 C 0.012 3.988 18 O -0.313 6.313 19 C -0.016 4.016 20 C -0.157 4.157 21 C -0.011 4.011 22 C -0.223 4.223 23 C -0.250 4.250 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.249 0.751 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.946 -7.596 13.786 16.826 hybrid contribution 0.543 1.045 -0.750 1.396 sum -5.403 -6.551 13.036 15.558 Atomic orbital electron populations 1.70119 1.06305 1.26348 1.52295 1.25657 0.95680 1.00977 1.00457 0.85540 0.79027 0.80954 0.76952 1.19726 1.21515 1.21618 1.19254 0.94387 0.86680 1.39018 0.92303 1.43425 1.49408 1.02235 1.33216 1.20959 0.90960 1.02775 0.83601 1.21845 0.92349 0.99448 0.87013 1.45866 1.12395 1.71928 1.05456 1.19088 0.88218 0.75849 0.84005 1.90731 1.19461 1.52295 1.85327 1.20941 0.96393 1.07991 0.92950 1.23944 1.01951 0.92323 0.94694 1.21780 0.82111 1.01416 0.93504 1.88115 1.34215 1.62098 1.46922 1.22817 0.97494 0.98335 0.82920 1.21160 0.89637 1.03794 1.01118 1.21545 1.02074 0.89410 0.88042 1.23054 0.92016 1.02304 1.04880 1.23261 0.97520 1.01126 1.03141 0.93738 0.90036 0.93387 0.93349 0.95070 0.75139 0.85924 0.85225 0.88491 0.86009 0.91073 0.89572 0.88125 0.87117 0.90746 0.87173 0.87785 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.42 11.33 21.65 0.25 -50.18 16 2 C -0.03 -1.61 4.96 84.86 0.42 -1.19 16 3 Si 0.95 44.40 29.61 68.60 2.03 46.43 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.26 -14.09 8.63 84.03 0.73 -13.36 16 8 H 0.06 3.20 6.55 -2.91 -0.02 3.19 16 9 N -0.57 -27.24 2.78 -678.03 -1.88 -29.12 16 10 C 0.14 6.33 5.45 86.38 0.47 6.80 16 11 C 0.12 4.93 6.00 86.38 0.52 5.45 16 12 N -0.71 -23.87 5.50 -466.71 -2.57 -26.44 16 13 C 0.54 18.73 7.73 86.57 0.67 19.40 16 14 O -0.60 -25.59 16.06 -4.07 -0.07 -25.65 16 15 C -0.18 -4.62 5.86 -18.58 -0.11 -4.73 16 16 C -0.11 -2.45 9.58 24.59 0.24 -2.22 16 17 C 0.09 1.35 7.04 71.10 0.50 1.85 16 18 O -0.39 -7.37 10.83 -148.98 -1.61 -8.99 16 19 C 0.06 0.89 6.88 72.01 0.50 1.39 16 20 C -0.12 -2.25 5.29 29.79 0.16 -2.10 16 21 C 0.10 3.97 6.56 44.99 0.30 4.27 16 22 C -0.18 -6.95 9.80 30.62 0.30 -6.65 16 23 C -0.21 -8.08 10.36 30.62 0.32 -7.77 16 24 H 0.25 13.59 8.32 -92.71 -0.77 12.82 16 25 H 0.08 4.06 5.36 -2.38 -0.01 4.05 16 26 H 0.05 1.92 8.07 -2.39 -0.02 1.90 16 27 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.41 11.53 6.78 -92.71 -0.63 10.90 16 30 H 0.12 3.05 7.29 -2.91 -0.02 3.03 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 35 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.10 1.59 7.31 -2.39 -0.02 1.58 16 37 H 0.11 3.97 8.14 -2.38 -0.02 3.96 16 38 H 0.07 3.17 6.37 -2.39 -0.02 3.15 16 39 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -68.18 337.12 1.54 -66.63 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.40 Total: 26.17 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.00 Total: 1.15 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -4.21 Total: -105.73 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -1.68 Total: -34.64 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.18 1.54 -66.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753153902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.703 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds