Wall clock time and date at job start Tue Mar 31 2020 02:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99639 * 2 1 4 4 H 1.48503 * 109.47459 * 270.00058 * 3 2 1 5 5 H 1.48506 * 109.47320 * 30.00320 * 3 2 1 6 6 H 1.48501 * 109.47065 * 150.00022 * 3 2 1 7 7 C 1.38810 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99377 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00357 * 359.97438 * 7 2 1 10 10 C 1.47356 * 126.79015 * 0.28580 * 9 7 2 11 11 C 1.56018 * 105.14985 * 182.06302 * 10 9 7 12 12 H 1.08997 * 116.89521 * 159.04966 * 11 10 9 13 13 C 1.57430 * 99.69105 * 32.49616 * 11 10 9 14 14 C 1.49286 * 126.94325 * 180.02562 * 9 7 2 15 15 H 1.09000 * 116.78922 * 16.28314 * 14 9 7 16 16 C 1.56018 * 104.09023 * 246.67586 * 14 9 7 17 17 N 1.47865 * 105.10554 * 288.77084 * 16 14 9 18 18 C 1.34779 * 126.94415 * 181.98275 * 17 16 14 19 19 O 1.21282 * 119.99922 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00037 * 0.02562 * 18 17 16 21 21 O 1.42905 * 109.46972 * 180.02562 * 20 18 17 22 22 C 1.42899 * 113.99778 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.46889 * 179.97438 * 22 21 20 24 24 C 1.52995 * 117.50099 * 243.74265 * 23 22 21 25 25 C 1.53002 * 117.49785 * 175.08320 * 23 22 21 26 26 H 0.96998 * 120.00077 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.43100 * 63.06832 * 10 9 7 28 28 H 1.09005 * 110.15777 * 300.91665 * 10 9 7 29 29 H 1.09000 * 112.53251 * 191.97836 * 13 11 10 30 30 H 1.09004 * 112.39322 * 64.47035 * 13 11 10 31 31 H 1.09002 * 110.31685 * 169.86209 * 16 14 9 32 32 H 1.09003 * 110.39994 * 47.71997 * 16 14 9 33 33 H 1.09000 * 109.47247 * 60.00371 * 20 18 17 34 34 H 1.09001 * 109.47358 * 299.99798 * 20 18 17 35 35 H 1.08997 * 109.47171 * 299.99768 * 22 21 20 36 36 H 1.08997 * 109.47442 * 59.99964 * 22 21 20 37 37 H 1.09000 * 115.55326 * 29.42245 * 23 22 21 38 38 H 1.09003 * 117.49863 * 0.02562 * 24 23 22 39 39 H 1.09001 * 117.49993 * 145.02412 * 24 23 22 40 40 H 1.08998 * 117.50021 * 214.97836 * 25 23 22 41 41 H 1.09000 * 117.50190 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1375 -2.5624 -0.0059 11 6 -0.3646 -4.1049 0.0509 12 1 -1.3373 -4.4474 0.4038 13 6 0.8849 -4.5252 0.9115 14 6 1.9104 -3.7617 -0.0005 15 1 2.9622 -3.8478 0.2723 16 6 1.5079 -4.3458 -1.3901 17 7 0.0513 -4.5836 -1.3009 18 6 -0.7418 -5.1192 -2.2500 19 8 -1.9285 -5.2572 -2.0416 20 6 -0.1538 -5.5464 -3.5701 21 8 -1.1870 -6.0785 -4.4018 22 6 -0.7332 -6.5162 -5.6842 23 6 -1.9166 -7.0642 -6.4842 24 6 -1.8885 -8.5466 -6.8614 25 6 -1.6578 -7.4791 -7.9339 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5665 -2.1501 -0.9192 28 1 -0.5762 -2.0828 0.8692 29 1 1.0500 -5.6026 0.9097 30 1 0.8478 -4.1201 1.9228 31 1 2.0338 -5.2828 -1.5735 32 1 1.7265 -3.6288 -2.1815 33 1 0.6053 -6.3099 -3.3998 34 1 0.3002 -4.6857 -4.0613 35 1 -0.2905 -5.6760 -6.2191 36 1 0.0133 -7.3001 -5.5574 37 1 -2.8857 -6.6221 -6.2527 38 1 -1.0270 -9.1317 -6.5393 39 1 -2.8391 -9.0798 -6.8784 40 1 -2.4567 -7.3105 -8.6560 41 1 -0.6443 -7.3621 -8.3177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753416537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:44 Heat of formation + Delta-G solvation = 7.743919 kcal Electronic energy + Delta-G solvation = -22116.152168 eV Core-core repulsion = 18806.132239 eV Total energy + Delta-G solvation = -3310.019930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09349 -38.67122 -37.65089 -36.27940 -33.66016 -31.66899 -29.49628 -28.66159 -28.22542 -26.09610 -25.20848 -23.38971 -22.62826 -21.01557 -20.58273 -19.85830 -18.46858 -17.40587 -16.88670 -16.31467 -16.07402 -15.90065 -15.24343 -14.89572 -14.36810 -14.26976 -13.90836 -13.38638 -13.29075 -12.56221 -12.35668 -12.15200 -11.87430 -11.78470 -11.68927 -11.33500 -11.23273 -11.03529 -10.86608 -10.81094 -10.69329 -10.59889 -10.45011 -10.27715 -10.09773 -9.67421 -9.61787 -9.35907 -8.71931 -8.01807 -6.95493 -5.78682 -3.14026 2.90352 3.03827 3.35630 3.40277 3.43212 3.53438 3.93156 4.39708 4.58056 4.65469 4.75678 4.93925 5.07139 5.09688 5.15627 5.18094 5.23940 5.33204 5.37436 5.38170 5.47971 5.53754 5.61441 5.63256 5.75438 5.84716 5.87943 5.99453 6.13789 6.25593 6.39186 6.45500 6.57018 6.65042 7.07181 7.41219 7.48772 7.70740 8.05549 8.09566 8.60483 9.08614 9.68950 10.37575 11.32964 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024094 B = 0.003675 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.845491 B = 7617.439758 C = 8129.020330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.175 3.825 11 C 0.101 3.899 12 H 0.114 0.886 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.080 3.920 17 N -0.608 5.608 18 C 0.529 3.471 19 O -0.535 6.535 20 C 0.052 3.948 21 O -0.360 6.360 22 C 0.091 3.909 23 C -0.151 4.151 24 C -0.178 4.178 25 C -0.175 4.175 26 H 0.254 0.746 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -14.412 -9.109 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.050 3.950 11 C -0.001 4.001 12 H 0.132 0.868 13 C -0.192 4.192 14 C 0.033 3.967 15 H 0.125 0.875 16 C -0.045 4.045 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.412 6.412 20 C -0.028 4.028 21 O -0.279 6.279 22 C 0.014 3.986 23 C -0.169 4.169 24 C -0.215 4.215 25 C -0.212 4.212 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.539 -14.238 -9.017 16.923 hybrid contribution 0.763 0.988 -0.285 1.280 sum 2.301 -13.250 -9.302 16.352 Atomic orbital electron populations 1.69925 1.04950 1.25377 1.56220 1.24839 0.95695 0.97772 1.01949 0.86108 0.78552 0.83418 0.77555 1.21613 1.21663 1.20628 1.19043 0.90416 0.82056 1.44653 0.90131 1.45122 1.01405 0.99304 1.86254 1.21835 0.84676 0.87127 1.01410 1.24445 0.97817 0.97555 0.80318 0.86794 1.24223 0.96798 0.98903 0.99256 1.23147 0.96599 0.86295 0.90699 0.87501 1.23348 0.79889 0.98877 1.02390 1.49162 1.09390 1.60232 1.15539 1.19670 0.86335 0.78032 0.84346 1.90688 1.15143 1.55469 1.79919 1.22161 0.90735 0.99090 0.90844 1.87998 1.32702 1.81458 1.25704 1.22042 0.94876 0.97791 0.83845 1.22120 1.00664 0.97819 0.96299 1.23077 1.03405 0.91692 1.03296 1.22985 1.03022 1.03708 0.91446 0.93527 0.93492 0.92495 0.91593 0.89712 0.92818 0.91061 0.90776 0.90408 0.92698 0.93172 0.86599 0.88709 0.88603 0.88398 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.53 55.49 0.58 -26.08 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.23 -6.13 10.37 -15.06 -0.16 -6.29 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -14.16 3.01 -156.77 -0.47 -14.63 16 10 C 0.17 4.19 4.74 -1.96 -0.01 4.19 16 11 C 0.10 1.97 5.26 -62.34 -0.33 1.64 16 12 H 0.11 2.19 8.06 -51.93 -0.42 1.77 16 13 C -0.15 -2.54 6.83 -22.12 -0.15 -2.69 16 14 C 0.14 2.55 5.53 -62.57 -0.35 2.20 16 15 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 16 C 0.08 1.32 6.00 -1.68 -0.01 1.31 16 17 N -0.61 -11.28 2.95 -156.55 -0.46 -11.74 16 18 C 0.53 10.14 7.97 -10.99 -0.09 10.05 16 19 O -0.54 -12.34 16.85 -14.35 -0.24 -12.58 16 20 C 0.05 0.76 5.70 36.01 0.21 0.97 16 21 O -0.36 -5.72 9.88 -55.14 -0.54 -6.27 16 22 C 0.09 1.05 6.22 37.16 0.23 1.28 16 23 C -0.15 -1.60 6.05 -90.62 -0.55 -2.15 16 24 C -0.18 -1.54 10.18 -26.70 -0.27 -1.82 16 25 C -0.17 -1.41 10.25 -26.69 -0.27 -1.68 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.05 1.30 7.68 -51.93 -0.40 0.91 16 28 H 0.06 1.51 7.43 -51.93 -0.39 1.12 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 37 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -32.68 337.60 -9.56 -42.24 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.65 Total: 0.71 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -1.84 Total: 6.77 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.35 Total: -52.45 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.79 Total: -18.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.68 -9.56 -42.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753416537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.980 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds