Wall clock time and date at job start Tue Mar 31 2020 02:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99639 * 2 1 4 4 H 1.48503 * 109.47459 * 270.00058 * 3 2 1 5 5 H 1.48506 * 109.47320 * 30.00320 * 3 2 1 6 6 H 1.48501 * 109.47065 * 150.00022 * 3 2 1 7 7 C 1.38810 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99377 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00357 * 359.97438 * 7 2 1 10 10 C 1.47356 * 126.79015 * 0.28580 * 9 7 2 11 11 C 1.56018 * 105.14985 * 182.06302 * 10 9 7 12 12 H 1.08997 * 116.89521 * 159.04966 * 11 10 9 13 13 C 1.57430 * 99.69105 * 32.49616 * 11 10 9 14 14 C 1.49286 * 126.94325 * 180.02562 * 9 7 2 15 15 H 1.09000 * 116.78922 * 16.28314 * 14 9 7 16 16 C 1.56018 * 104.09023 * 246.67586 * 14 9 7 17 17 N 1.47865 * 105.10554 * 288.77084 * 16 14 9 18 18 C 1.34779 * 126.94415 * 181.98275 * 17 16 14 19 19 O 1.21282 * 119.99922 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00037 * 0.02562 * 18 17 16 21 21 O 1.42905 * 109.46972 * 180.02562 * 20 18 17 22 22 C 1.42899 * 113.99778 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.46889 * 179.97438 * 22 21 20 24 24 C 1.52995 * 117.50099 * 243.74265 * 23 22 21 25 25 C 1.53002 * 117.49785 * 175.08320 * 23 22 21 26 26 H 0.96998 * 120.00077 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.43100 * 63.06832 * 10 9 7 28 28 H 1.09005 * 110.15777 * 300.91665 * 10 9 7 29 29 H 1.09000 * 112.53251 * 191.97836 * 13 11 10 30 30 H 1.09004 * 112.39322 * 64.47035 * 13 11 10 31 31 H 1.09002 * 110.31685 * 169.86209 * 16 14 9 32 32 H 1.09003 * 110.39994 * 47.71997 * 16 14 9 33 33 H 1.09000 * 109.47247 * 60.00371 * 20 18 17 34 34 H 1.09001 * 109.47358 * 299.99798 * 20 18 17 35 35 H 1.08997 * 109.47171 * 299.99768 * 22 21 20 36 36 H 1.08997 * 109.47442 * 59.99964 * 22 21 20 37 37 H 1.09000 * 115.55326 * 29.42245 * 23 22 21 38 38 H 1.09003 * 117.49863 * 0.02562 * 24 23 22 39 39 H 1.09001 * 117.49993 * 145.02412 * 24 23 22 40 40 H 1.08998 * 117.50021 * 214.97836 * 25 23 22 41 41 H 1.09000 * 117.50190 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1375 -2.5624 -0.0059 11 6 -0.3646 -4.1049 0.0509 12 1 -1.3373 -4.4474 0.4038 13 6 0.8849 -4.5252 0.9115 14 6 1.9104 -3.7617 -0.0005 15 1 2.9622 -3.8478 0.2723 16 6 1.5079 -4.3458 -1.3901 17 7 0.0513 -4.5836 -1.3009 18 6 -0.7418 -5.1192 -2.2500 19 8 -1.9285 -5.2572 -2.0416 20 6 -0.1538 -5.5464 -3.5701 21 8 -1.1870 -6.0785 -4.4018 22 6 -0.7332 -6.5162 -5.6842 23 6 -1.9166 -7.0642 -6.4842 24 6 -1.8885 -8.5466 -6.8614 25 6 -1.6578 -7.4791 -7.9339 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5665 -2.1501 -0.9192 28 1 -0.5762 -2.0828 0.8692 29 1 1.0500 -5.6026 0.9097 30 1 0.8478 -4.1201 1.9228 31 1 2.0338 -5.2828 -1.5735 32 1 1.7265 -3.6288 -2.1815 33 1 0.6053 -6.3099 -3.3998 34 1 0.3002 -4.6857 -4.0613 35 1 -0.2905 -5.6760 -6.2191 36 1 0.0133 -7.3001 -5.5574 37 1 -2.8857 -6.6221 -6.2527 38 1 -1.0270 -9.1317 -6.5393 39 1 -2.8391 -9.0798 -6.8784 40 1 -2.4567 -7.3105 -8.6560 41 1 -0.6443 -7.3621 -8.3177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753416537.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:43 Heat of formation + Delta-G solvation = -12.412009 kcal Electronic energy + Delta-G solvation = -22117.026195 eV Core-core repulsion = 18806.132239 eV Total energy + Delta-G solvation = -3310.893956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61236 -39.86586 -38.86436 -37.27314 -35.48592 -33.41236 -31.09964 -30.27872 -29.42818 -27.13603 -26.98195 -25.07160 -23.25589 -22.31522 -21.67820 -21.40790 -20.05765 -18.90303 -18.26537 -17.62709 -17.38277 -17.22673 -16.63142 -16.14278 -15.92573 -15.59265 -15.16442 -14.83621 -14.71203 -13.82249 -13.72267 -13.49785 -13.43518 -13.25351 -13.07002 -12.83341 -12.69563 -12.38576 -12.33396 -12.12825 -12.09637 -12.04466 -11.87938 -11.53590 -11.39002 -11.28110 -10.92852 -10.68221 -10.53366 -9.56666 -8.91333 -7.83933 -5.20402 1.47484 1.48740 1.53420 1.57712 1.69313 2.49050 2.67910 2.98607 3.33468 3.37706 3.57161 3.79116 3.89412 3.90822 3.96014 4.02609 4.10707 4.13714 4.21571 4.22506 4.32439 4.51286 4.60556 4.68624 4.69199 4.77450 4.82239 4.93981 5.00727 5.03068 5.15253 5.20641 5.24423 5.25409 5.46026 5.51807 5.65774 6.09371 6.10748 6.62241 7.03560 7.13515 7.71903 8.41652 9.26926 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024094 B = 0.003675 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.845491 B = 7617.439758 C = 8129.020330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.229 4.229 8 H 0.099 0.901 9 N -0.616 5.616 10 C 0.189 3.811 11 C 0.099 3.901 12 H 0.110 0.890 13 C -0.129 4.129 14 C 0.136 3.864 15 H 0.141 0.859 16 C 0.086 3.914 17 N -0.608 5.608 18 C 0.518 3.482 19 O -0.587 6.587 20 C 0.061 3.939 21 O -0.396 6.396 22 C 0.088 3.912 23 C -0.180 4.180 24 C -0.174 4.174 25 C -0.157 4.157 26 H 0.243 0.757 27 H -0.006 1.006 28 H 0.017 0.983 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.718 -16.836 -10.046 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.266 4.266 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.116 0.884 9 N -0.341 5.341 10 C 0.062 3.938 11 C -0.004 4.004 12 H 0.128 0.872 13 C -0.168 4.168 14 C 0.030 3.970 15 H 0.158 0.842 16 C -0.037 4.037 17 N -0.343 5.343 18 C 0.308 3.692 19 O -0.467 6.467 20 C -0.019 4.019 21 O -0.316 6.316 22 C 0.013 3.987 23 C -0.199 4.199 24 C -0.211 4.211 25 C -0.194 4.194 26 H 0.052 0.948 27 H 0.012 0.988 28 H 0.035 0.965 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.850 -16.709 -9.964 20.050 hybrid contribution -0.252 1.688 -0.015 1.707 sum 4.598 -15.021 -9.979 18.611 Atomic orbital electron populations 1.70181 1.06697 1.25109 1.58836 1.25699 0.96381 1.01330 1.03214 0.85075 0.77832 0.79191 0.77209 1.21746 1.23077 1.18485 1.19567 0.91363 0.83031 1.41794 0.88357 1.45388 1.01365 1.01274 1.86061 1.21396 0.85201 0.90106 0.97069 1.24257 0.99485 0.94177 0.82469 0.87221 1.24126 0.93619 1.00979 0.98047 1.23609 0.98420 0.82990 0.92011 0.84170 1.23338 0.78666 1.01126 1.00613 1.49252 1.10499 1.59550 1.14983 1.20590 0.85810 0.77185 0.85648 1.90657 1.17441 1.57643 1.80981 1.22156 0.90707 1.00725 0.88268 1.87966 1.34178 1.81861 1.27558 1.22264 0.95598 0.98768 0.82098 1.22117 0.99631 0.99544 0.98585 1.23182 1.04075 0.90808 1.03066 1.23091 1.04184 1.01917 0.90194 0.94798 0.98796 0.96473 0.87629 0.90129 0.87255 0.92472 0.86724 0.89210 0.91811 0.90876 0.88995 0.87590 0.88359 0.87638 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.72 10.53 21.65 0.23 -58.50 16 2 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 3 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.23 -11.92 10.37 84.03 0.87 -11.05 16 8 H 0.10 4.67 7.83 -2.91 -0.02 4.65 16 9 N -0.62 -29.09 3.01 -649.89 -1.95 -31.04 16 10 C 0.19 9.48 4.74 87.26 0.41 9.90 16 11 C 0.10 3.89 5.26 47.05 0.25 4.13 16 12 H 0.11 4.35 8.06 -2.39 -0.02 4.33 16 13 C -0.13 -3.92 6.83 33.58 0.23 -3.69 16 14 C 0.14 4.44 5.53 46.92 0.26 4.70 16 15 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 16 C 0.09 2.53 6.00 87.16 0.52 3.05 16 17 N -0.61 -21.76 2.95 -767.60 -2.26 -24.02 16 18 C 0.52 19.54 7.97 87.66 0.70 20.24 16 19 O -0.59 -27.77 16.85 16.00 0.27 -27.50 16 20 C 0.06 1.66 5.70 71.24 0.41 2.06 16 21 O -0.40 -12.21 9.88 -129.94 -1.28 -13.49 16 22 C 0.09 1.86 6.22 71.98 0.45 2.30 16 23 C -0.18 -3.66 6.05 -10.79 -0.07 -3.72 16 24 C -0.17 -2.69 10.18 30.62 0.31 -2.38 16 25 C -0.16 -2.18 10.25 30.62 0.31 -1.87 16 26 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 27 H -0.01 -0.37 7.68 -2.39 -0.02 -0.39 16 28 H 0.02 0.98 7.43 -2.38 -0.02 0.96 16 29 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 31 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.17 7.87 -2.39 -0.02 1.15 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.11 1.39 8.03 -2.39 -0.02 1.37 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -76.91 337.60 3.15 -73.76 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.00 Total: 13.79 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.12 Total: 20.03 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -3.99 Total: -113.56 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.01 Total: -40.99 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.91 3.15 -73.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753416537.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.345 kcal (2) G-P(sol) polarization free energy of solvation -76.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds