Wall clock time and date at job start Tue Mar 31 2020 01:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48501 * 109.47258 * 269.99954 * 3 2 1 5 5 H 1.48495 * 109.47220 * 30.00444 * 3 2 1 6 6 H 1.48501 * 109.46745 * 149.99877 * 3 2 1 7 7 C 1.40048 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00071 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00168 * 5.00467 * 9 7 2 11 11 N 1.34783 * 119.99897 * 185.00790 * 9 7 2 12 12 C 1.46924 * 120.62932 * 174.76390 * 11 9 7 13 13 C 1.53194 * 108.77881 * 126.41257 * 12 11 9 14 14 C 1.53040 * 109.31128 * 54.63217 * 13 12 11 15 15 C 1.53045 * 109.53400 * 298.63576 * 14 13 12 16 16 H 1.09000 * 109.50011 * 301.37714 * 15 14 13 17 17 N 1.46506 * 109.49328 * 181.32045 * 15 14 13 18 18 C 1.45751 * 117.94823 * 120.00155 * 17 15 14 19 19 C 1.52919 * 110.48800 * 160.92400 * 18 17 15 20 20 C 1.53347 * 108.67514 * 50.75484 * 19 18 17 21 21 C 1.53062 * 108.43392 * 292.47961 * 20 19 18 22 22 C 1.33352 * 117.94436 * 300.02255 * 17 15 14 23 23 O 1.21284 * 118.24901 * 2.19832 * 22 17 15 24 24 C 1.46921 * 120.62941 * 354.77963 * 11 9 7 25 25 H 0.97001 * 120.00386 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.58998 * 6.62054 * 12 11 9 27 27 H 1.09004 * 109.69818 * 246.26859 * 12 11 9 28 28 H 1.08997 * 109.49099 * 294.68185 * 13 12 11 29 29 H 1.09001 * 109.49906 * 174.58274 * 13 12 11 30 30 H 1.09000 * 109.45693 * 178.62120 * 14 13 12 31 31 H 1.08999 * 109.44838 * 58.65029 * 14 13 12 32 32 H 1.08998 * 109.30018 * 40.60694 * 18 17 15 33 33 H 1.09003 * 109.29833 * 281.23194 * 18 17 15 34 34 H 1.09003 * 109.60149 * 170.50614 * 19 18 17 35 35 H 1.08996 * 109.60537 * 290.99502 * 19 18 17 36 36 H 1.08996 * 109.67541 * 52.20251 * 20 19 18 37 37 H 1.08999 * 109.67270 * 172.73811 * 20 19 18 38 38 H 1.09002 * 109.40327 * 288.76039 * 21 20 19 39 39 H 1.08997 * 109.32791 * 168.97017 * 21 20 19 40 40 H 1.09003 * 109.58748 * 113.80511 * 24 11 9 41 41 H 1.08999 * 109.59139 * 353.37547 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5382 1.4402 0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0617 -2.4824 -0.0941 11 7 1.9451 -3.6455 0.0997 12 6 1.2202 -4.9183 0.2151 13 6 1.7220 -5.8721 -0.8736 14 6 3.2432 -6.0034 -0.7695 15 6 3.8913 -4.6347 -0.9902 16 1 3.6066 -4.2510 -1.9699 17 7 5.3488 -4.7670 -0.9217 18 6 6.1249 -4.3905 -2.0965 19 6 7.5842 -4.1381 -1.7156 20 6 8.0951 -5.3370 -0.9075 21 6 7.3606 -5.3641 0.4351 22 6 5.8821 -5.2249 0.2116 23 8 5.1331 -5.5457 1.1099 24 6 3.4141 -3.6669 0.0972 25 1 -0.4851 0.8400 0.0004 26 1 0.1523 -4.7438 0.0842 27 1 1.4012 -5.3565 1.1967 28 1 1.4572 -5.4764 -1.8540 29 1 1.2624 -6.8513 -0.7395 30 1 3.6002 -6.7007 -1.5275 31 1 3.5085 -6.3756 0.2201 32 1 5.7039 -3.4838 -2.5309 33 1 6.0782 -5.1938 -2.8317 34 1 8.1834 -4.0239 -2.6189 35 1 7.6533 -3.2336 -1.1113 36 1 7.8958 -6.2592 -1.4532 37 1 9.1669 -5.2350 -0.7375 38 1 7.7120 -4.5406 1.0568 39 1 7.5633 -6.3096 0.9381 40 1 3.7764 -4.0020 1.0691 41 1 3.7938 -2.6667 -0.1116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369972607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:06 Heat of formation + Delta-G solvation = -71.401092 kcal Electronic energy + Delta-G solvation = -23240.696707 eV Core-core repulsion = 19927.244792 eV Total energy + Delta-G solvation = -3313.451915 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72909 -38.11548 -36.41115 -35.77733 -33.58231 -32.43699 -31.49578 -29.85486 -28.99662 -26.40045 -24.52059 -24.13429 -23.29160 -21.78952 -20.57402 -18.76747 -18.38076 -16.86631 -16.22245 -16.09898 -15.63741 -15.48098 -14.43977 -14.35820 -14.28017 -13.96410 -13.81554 -13.67813 -13.27514 -13.07278 -12.92894 -12.31645 -12.16172 -11.83532 -11.58438 -11.36999 -11.29513 -11.17257 -11.08172 -11.00614 -10.93046 -10.52417 -10.42105 -10.21738 -10.06213 -9.79371 -9.18594 -8.84463 -8.57357 -7.52807 -7.08269 -6.17359 -4.61888 2.79222 3.07129 3.13440 3.20313 3.23673 4.10616 4.48793 4.56001 4.57259 4.59666 4.65043 4.74525 5.17538 5.21583 5.28903 5.37732 5.41165 5.51728 5.56579 5.64325 5.65495 5.68927 5.78081 5.81321 5.89243 5.98103 6.11172 6.21981 6.31053 6.38168 6.54561 6.64886 6.71453 6.75520 7.00181 7.47514 7.66052 7.69888 8.17758 8.36808 8.41667 9.04285 9.49270 10.60769 10.79647 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.005976 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.057475 B = 4684.384684 C = 5780.820189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.560 3.440 10 O -0.578 6.578 11 N -0.638 5.638 12 C 0.119 3.881 13 C -0.127 4.127 14 C -0.129 4.129 15 C 0.129 3.871 16 H 0.084 0.916 17 N -0.597 5.597 18 C 0.112 3.888 19 C -0.137 4.137 20 C -0.122 4.122 21 C -0.135 4.135 22 C 0.513 3.487 23 O -0.542 6.542 24 C 0.113 3.887 25 H 0.268 0.732 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.918 -9.283 -4.683 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.089 0.911 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.376 5.376 12 C -0.005 4.005 13 C -0.166 4.166 14 C -0.168 4.168 15 C 0.025 3.975 16 H 0.103 0.897 17 N -0.330 5.330 18 C -0.011 4.011 19 C -0.174 4.174 20 C -0.160 4.160 21 C -0.175 4.175 22 C 0.301 3.699 23 O -0.421 6.421 24 C -0.012 4.012 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.680 -9.321 -4.262 18.732 hybrid contribution 0.670 0.801 -0.201 1.064 sum 16.350 -8.520 -4.462 18.969 Atomic orbital electron populations 1.70016 1.07030 1.27215 1.35420 1.25719 0.94590 1.00206 0.92631 0.86422 0.80244 0.81624 0.78786 1.19748 1.20402 1.18930 1.20968 0.93462 0.89331 1.54292 0.91132 1.18231 0.86884 0.82209 0.76064 1.90583 1.14357 1.86141 1.55000 1.48080 1.04200 1.06007 1.79312 1.21136 0.98264 0.84973 0.96106 1.21882 0.94980 0.99415 1.00340 1.21910 0.95468 0.95989 1.03394 1.21680 0.77674 0.97129 1.00995 0.89741 1.47431 1.07545 1.64251 1.13729 1.21427 0.91432 1.00807 0.87451 1.21892 0.95138 0.99087 1.01321 1.21646 1.00155 0.98837 0.95370 1.21677 0.91785 1.04939 0.99094 1.20066 0.90944 0.77061 0.81836 1.90678 1.60583 1.49417 1.41382 1.21743 0.82740 0.98871 0.97876 0.92128 0.89886 0.93869 0.92183 0.91867 0.93270 0.89334 0.90305 0.91952 0.89932 0.90692 0.91295 0.90794 0.88433 0.88566 0.91404 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.28 11.84 55.55 0.66 -22.62 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.90 20.24 29.56 -169.99 -5.02 15.22 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -15.57 8.86 -35.63 -0.32 -15.88 16 8 H 0.07 1.86 5.69 -52.49 -0.30 1.56 16 9 C 0.56 16.47 7.62 -12.99 -0.10 16.37 16 10 O -0.58 -19.14 14.45 5.20 0.08 -19.06 16 11 N -0.64 -15.46 2.97 -174.43 -0.52 -15.98 16 12 C 0.12 2.55 6.44 -3.71 -0.02 2.52 16 13 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 14 C -0.13 -2.11 5.03 -26.69 -0.13 -2.24 16 15 C 0.13 2.16 2.63 -67.81 -0.18 1.98 16 16 H 0.08 1.41 7.79 -51.93 -0.40 1.01 16 17 N -0.60 -8.12 2.79 -167.23 -0.47 -8.58 16 18 C 0.11 1.10 6.25 -4.49 -0.03 1.07 16 19 C -0.14 -1.02 6.02 -26.59 -0.16 -1.18 16 20 C -0.12 -0.88 6.03 -26.52 -0.16 -1.04 16 21 C -0.14 -1.32 6.03 -28.10 -0.17 -1.49 16 22 C 0.51 7.30 6.87 -11.87 -0.08 7.22 16 23 O -0.54 -9.89 12.46 5.55 0.07 -9.82 16 24 C 0.11 2.35 5.54 -3.72 -0.02 2.33 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.08 1.93 6.99 -51.93 -0.36 1.57 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 32 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.07 0.49 8.13 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.49 5.90 -51.93 -0.31 1.18 16 41 H 0.09 1.87 5.37 -51.93 -0.28 1.59 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -35.91 317.78 -8.20 -44.12 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.16 Total: 2.24 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -1.63 Total: 9.70 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.33 Total: -47.18 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: 0.14 Total: -28.88 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.91 -8.20 -44.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369972607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.283 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds