Wall clock time and date at job start Tue Mar 31 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48501 * 109.47258 * 269.99954 * 3 2 1 5 5 H 1.48495 * 109.47220 * 30.00444 * 3 2 1 6 6 H 1.48501 * 109.46745 * 149.99877 * 3 2 1 7 7 C 1.40048 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00071 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00168 * 5.00467 * 9 7 2 11 11 N 1.34783 * 119.99897 * 185.00790 * 9 7 2 12 12 C 1.46924 * 120.62932 * 174.76390 * 11 9 7 13 13 C 1.53194 * 108.77881 * 126.41257 * 12 11 9 14 14 C 1.53040 * 109.31128 * 54.63217 * 13 12 11 15 15 C 1.53045 * 109.53400 * 298.63576 * 14 13 12 16 16 H 1.09000 * 109.50011 * 301.37714 * 15 14 13 17 17 N 1.46506 * 109.49328 * 181.32045 * 15 14 13 18 18 C 1.45751 * 117.94823 * 120.00155 * 17 15 14 19 19 C 1.52919 * 110.48800 * 160.92400 * 18 17 15 20 20 C 1.53347 * 108.67514 * 50.75484 * 19 18 17 21 21 C 1.53062 * 108.43392 * 292.47961 * 20 19 18 22 22 C 1.33352 * 117.94436 * 300.02255 * 17 15 14 23 23 O 1.21284 * 118.24901 * 2.19832 * 22 17 15 24 24 C 1.46921 * 120.62941 * 354.77963 * 11 9 7 25 25 H 0.97001 * 120.00386 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.58998 * 6.62054 * 12 11 9 27 27 H 1.09004 * 109.69818 * 246.26859 * 12 11 9 28 28 H 1.08997 * 109.49099 * 294.68185 * 13 12 11 29 29 H 1.09001 * 109.49906 * 174.58274 * 13 12 11 30 30 H 1.09000 * 109.45693 * 178.62120 * 14 13 12 31 31 H 1.08999 * 109.44838 * 58.65029 * 14 13 12 32 32 H 1.08998 * 109.30018 * 40.60694 * 18 17 15 33 33 H 1.09003 * 109.29833 * 281.23194 * 18 17 15 34 34 H 1.09003 * 109.60149 * 170.50614 * 19 18 17 35 35 H 1.08996 * 109.60537 * 290.99502 * 19 18 17 36 36 H 1.08996 * 109.67541 * 52.20251 * 20 19 18 37 37 H 1.08999 * 109.67270 * 172.73811 * 20 19 18 38 38 H 1.09002 * 109.40327 * 288.76039 * 21 20 19 39 39 H 1.08997 * 109.32791 * 168.97017 * 21 20 19 40 40 H 1.09003 * 109.58748 * 113.80511 * 24 11 9 41 41 H 1.08999 * 109.59139 * 353.37547 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5382 1.4402 0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0617 -2.4824 -0.0941 11 7 1.9451 -3.6455 0.0997 12 6 1.2202 -4.9183 0.2151 13 6 1.7220 -5.8721 -0.8736 14 6 3.2432 -6.0034 -0.7695 15 6 3.8913 -4.6347 -0.9902 16 1 3.6066 -4.2510 -1.9699 17 7 5.3488 -4.7670 -0.9217 18 6 6.1249 -4.3905 -2.0965 19 6 7.5842 -4.1381 -1.7156 20 6 8.0951 -5.3370 -0.9075 21 6 7.3606 -5.3641 0.4351 22 6 5.8821 -5.2249 0.2116 23 8 5.1331 -5.5457 1.1099 24 6 3.4141 -3.6669 0.0972 25 1 -0.4851 0.8400 0.0004 26 1 0.1523 -4.7438 0.0842 27 1 1.4012 -5.3565 1.1967 28 1 1.4572 -5.4764 -1.8540 29 1 1.2624 -6.8513 -0.7395 30 1 3.6002 -6.7007 -1.5275 31 1 3.5085 -6.3756 0.2201 32 1 5.7039 -3.4838 -2.5309 33 1 6.0782 -5.1938 -2.8317 34 1 8.1834 -4.0239 -2.6189 35 1 7.6533 -3.2336 -1.1113 36 1 7.8958 -6.2592 -1.4532 37 1 9.1669 -5.2350 -0.7375 38 1 7.7120 -4.5406 1.0568 39 1 7.5633 -6.3096 0.9381 40 1 3.7764 -4.0020 1.0691 41 1 3.7938 -2.6667 -0.1116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369972607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:05 Heat of formation + Delta-G solvation = -96.198486 kcal Electronic energy + Delta-G solvation = -23241.772003 eV Core-core repulsion = 19927.244792 eV Total energy + Delta-G solvation = -3314.527210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88938 -39.92820 -37.62105 -37.36284 -34.95111 -34.49772 -33.23816 -30.88592 -30.22076 -28.52116 -25.93153 -25.35263 -24.51513 -23.07613 -22.03586 -20.59545 -19.33564 -18.56362 -17.92203 -17.48337 -17.11260 -16.66303 -16.13306 -15.93623 -15.48603 -15.25090 -15.05856 -14.79233 -14.60268 -14.41154 -14.17528 -14.12596 -13.70609 -13.44277 -13.06836 -12.79016 -12.74228 -12.63054 -12.51911 -12.21966 -12.06330 -11.84147 -11.80519 -11.71325 -11.60553 -11.44694 -10.95451 -10.36192 -9.90070 -9.69919 -9.01845 -8.31830 -6.87668 1.36444 1.38733 1.53785 1.70238 1.98335 2.22357 2.42768 2.87597 3.49779 3.63842 3.86123 3.91224 3.96392 3.99770 4.02567 4.06361 4.19315 4.34825 4.52471 4.56224 4.59853 4.62490 4.71718 4.89115 4.93589 4.94279 4.96171 4.99508 5.05359 5.09316 5.12803 5.19312 5.30781 5.34776 5.42312 5.58250 5.75640 6.08451 6.36669 6.62294 6.84172 7.27638 7.37829 8.42664 8.64143 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.005976 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.057475 B = 4684.384684 C = 5780.820189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.251 1.251 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.541 3.459 10 O -0.630 6.630 11 N -0.641 5.641 12 C 0.115 3.885 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.137 3.863 16 H 0.087 0.913 17 N -0.594 5.594 18 C 0.102 3.898 19 C -0.132 4.132 20 C -0.115 4.115 21 C -0.129 4.129 22 C 0.503 3.497 23 O -0.591 6.591 24 C 0.118 3.882 25 H 0.275 0.725 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.524 -9.318 -6.067 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.174 1.174 7 C -0.605 4.605 8 H 0.105 0.895 9 C 0.347 3.653 10 O -0.518 6.518 11 N -0.377 5.377 12 C -0.009 4.009 13 C -0.154 4.154 14 C -0.157 4.157 15 C 0.032 3.968 16 H 0.105 0.895 17 N -0.325 5.325 18 C -0.019 4.019 19 C -0.169 4.169 20 C -0.152 4.152 21 C -0.169 4.169 22 C 0.293 3.707 23 O -0.472 6.472 24 C -0.006 4.006 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 19.361 -9.403 -5.674 22.259 hybrid contribution -0.467 0.748 0.272 0.923 sum 18.894 -8.655 -5.402 21.473 Atomic orbital electron populations 1.70188 1.09548 1.28994 1.36328 1.27003 0.95531 1.04902 0.91139 0.85057 0.78744 0.75063 0.79697 1.18052 1.19647 1.17397 1.21437 0.94459 0.89866 1.54700 0.89472 1.18672 0.86594 0.84055 0.75953 1.90527 1.16417 1.87336 1.57479 1.47975 1.05833 1.05783 1.78158 1.21275 0.96673 0.84831 0.98107 1.21788 0.96028 0.99474 0.98141 1.21811 0.94370 0.96118 1.03449 1.21365 0.80165 0.96248 0.99048 0.89519 1.47515 1.06236 1.63799 1.14993 1.21754 0.92515 1.01367 0.86280 1.21913 0.93561 0.98889 1.02546 1.21650 1.01153 0.98926 0.93479 1.21710 0.88469 1.05580 1.01143 1.20966 0.92734 0.75895 0.81072 1.90660 1.62114 1.51525 1.42937 1.21745 0.80464 0.99429 0.98992 0.91503 0.92685 0.93598 0.92528 0.88868 0.90362 0.90856 0.90649 0.89990 0.87091 0.91426 0.90647 0.88233 0.87750 0.87818 0.92712 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.42 11.84 21.84 0.26 -51.16 16 2 C 0.03 1.68 5.50 85.30 0.47 2.14 16 3 Si 1.00 41.55 29.56 68.60 2.03 43.57 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.57 -33.42 8.86 24.83 0.22 -33.20 16 8 H 0.09 4.66 5.69 -2.91 -0.02 4.64 16 9 C 0.54 33.34 7.62 86.36 0.66 34.00 16 10 O -0.63 -44.18 14.45 -4.30 -0.06 -44.24 16 11 N -0.64 -32.39 2.97 -824.00 -2.45 -34.84 16 12 C 0.11 5.10 6.44 86.36 0.56 5.66 16 13 C -0.12 -3.92 6.08 30.67 0.19 -3.73 16 14 C -0.12 -3.75 5.03 30.62 0.15 -3.59 16 15 C 0.14 4.49 2.63 45.07 0.12 4.61 16 16 H 0.09 2.82 7.79 -2.39 -0.02 2.80 16 17 N -0.59 -15.19 2.79 -802.18 -2.24 -17.43 16 18 C 0.10 1.72 6.25 86.49 0.54 2.26 16 19 C -0.13 -1.47 6.02 30.68 0.18 -1.28 16 20 C -0.11 -1.17 6.03 30.73 0.19 -0.99 16 21 C -0.13 -2.20 6.03 29.71 0.18 -2.02 16 22 C 0.50 13.70 6.87 87.72 0.60 14.30 16 23 O -0.59 -21.59 12.46 -3.04 -0.04 -21.63 16 24 C 0.12 5.02 5.54 86.36 0.48 5.50 16 25 H 0.28 15.53 8.29 -92.71 -0.77 14.76 16 26 H 0.05 2.73 6.99 -2.39 -0.02 2.72 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.61 5.88 -2.39 -0.01 2.60 16 32 H 0.08 1.33 8.03 -2.39 -0.02 1.31 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 2.49 5.90 -2.39 -0.01 2.47 16 41 H 0.07 3.25 5.37 -2.39 -0.01 3.23 16 Total: -1.00 -83.51 317.78 3.06 -80.45 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.03 Total: 21.62 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 4.53 Total: 23.65 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -4.43 Total: -103.43 kcal Atomic # 8 Polarization: -65.77 SS G_CDS: -0.10 Total: -65.87 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -83.51 3.06 -80.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369972607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.744 kcal (2) G-P(sol) polarization free energy of solvation -83.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds