Wall clock time and date at job start Tue Mar 31 2020 01:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47138 * 269.99569 * 3 2 1 5 5 H 1.48499 * 109.47016 * 29.99282 * 3 2 1 6 6 H 1.48499 * 109.47324 * 149.99397 * 3 2 1 7 7 C 1.38811 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00451 * 197.37135 * 7 2 1 9 9 N 1.36945 * 119.99589 * 17.37213 * 7 2 1 10 10 C 1.46924 * 120.62776 * 27.66228 * 9 7 2 11 11 C 1.53195 * 108.77229 * 126.41633 * 10 9 7 12 12 C 1.53037 * 109.31612 * 54.63151 * 11 10 9 13 13 C 1.53034 * 109.53713 * 298.63660 * 12 11 10 14 14 H 1.08992 * 109.52579 * 301.39575 * 13 12 11 15 15 N 1.46497 * 109.49645 * 181.31452 * 13 12 11 16 16 C 1.34778 * 120.00041 * 155.16105 * 15 13 12 17 17 O 1.21281 * 120.00354 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00246 * 179.97438 * 16 15 13 19 19 C 1.52998 * 119.81102 * 248.97996 * 18 16 15 20 20 C 1.54505 * 122.36906 * 176.59804 * 18 16 15 21 21 H 1.09002 * 122.36546 * 0.55303 * 20 18 16 22 22 C 1.54487 * 104.06508 * 223.22081 * 20 18 16 23 23 O 1.44423 * 104.79981 * 23.97629 * 22 20 18 24 24 C 1.44421 * 105.27964 * 319.48989 * 23 22 20 25 25 C 1.46920 * 120.63163 * 207.68552 * 9 7 2 26 26 H 0.96998 * 120.00028 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.58813 * 246.20029 * 10 9 7 28 28 H 1.08999 * 109.59195 * 6.62906 * 10 9 7 29 29 H 1.09009 * 109.49408 * 174.58860 * 11 10 9 30 30 H 1.09004 * 109.49431 * 294.64382 * 11 10 9 31 31 H 1.09002 * 109.46056 * 178.61232 * 12 11 10 32 32 H 1.09003 * 109.45545 * 58.65375 * 12 11 10 33 33 H 0.97002 * 120.00252 * 335.15940 * 15 13 12 34 34 H 1.09003 * 117.43106 * 354.34084 * 19 18 16 35 35 H 1.08999 * 117.43454 * 139.04678 * 19 18 16 36 36 H 1.09003 * 110.37106 * 265.15019 * 22 20 18 37 37 H 1.08994 * 110.37302 * 142.81230 * 22 20 18 38 38 H 1.08997 * 110.37984 * 159.34372 * 24 23 22 39 39 H 1.09004 * 110.37405 * 281.57259 * 24 23 22 40 40 H 1.09002 * 109.59010 * 113.79828 * 25 9 7 41 41 H 1.09003 * 109.70464 * 353.44425 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2798 9 7 1.3724 -2.3612 -0.3531 10 6 0.2279 -2.3347 -1.2740 11 6 0.5008 -3.3052 -2.4275 12 6 0.8187 -4.6902 -1.8594 13 6 2.0743 -4.6102 -0.9883 14 1 2.9084 -4.2407 -1.5846 15 7 2.3957 -5.9423 -0.4704 16 6 3.6621 -6.2412 -0.1191 17 8 4.5356 -5.4073 -0.2313 18 6 3.9928 -7.6114 0.4142 19 6 4.3892 -7.7809 1.8822 20 6 5.4368 -8.0378 0.7608 21 1 6.2873 -7.3660 0.6451 22 6 5.5535 -9.4680 0.1884 23 8 4.5576 -9.5300 -0.8556 24 6 3.4078 -8.8344 -0.3266 25 6 1.8192 -3.6546 0.1816 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6743 -2.6410 -0.7445 28 1 0.0986 -1.3265 -1.6675 29 1 -0.3801 -3.3674 -3.0667 30 1 1.3491 -2.9472 -3.0110 31 1 0.9890 -5.3885 -2.6789 32 1 -0.0205 -5.0365 -1.2561 33 1 1.6972 -6.6093 -0.3802 34 1 4.5104 -6.8758 2.4774 35 1 3.9867 -8.6426 2.4148 36 1 5.3385 -10.2051 0.9621 37 1 6.5484 -9.6308 -0.2260 38 1 2.7543 -8.5104 -1.1365 39 1 2.8626 -9.4749 0.3667 40 1 1.0469 -4.0686 0.8298 41 1 2.7394 -3.5192 0.7501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007375868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:26 Heat of formation + Delta-G solvation = -26.188874 kcal Electronic energy + Delta-G solvation = -22508.555064 eV Core-core repulsion = 19197.063698 eV Total energy + Delta-G solvation = -3311.491366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91002 -38.98808 -37.25399 -34.74580 -34.29853 -32.43376 -30.47297 -29.58484 -28.28316 -25.67028 -25.28695 -23.76014 -22.12666 -21.70837 -21.12175 -19.80994 -19.09269 -17.53524 -16.78054 -16.19168 -15.69696 -15.49879 -15.02754 -14.69161 -14.60728 -14.20774 -13.86833 -13.49482 -13.38736 -13.14670 -12.81126 -12.42571 -12.39174 -12.12520 -11.84135 -11.54266 -11.12087 -10.95764 -10.82370 -10.79281 -10.53044 -10.26311 -10.21880 -10.04406 -9.90818 -9.82889 -9.63994 -9.44319 -8.83903 -8.40195 -6.67749 -5.78047 -3.20302 2.55131 3.13360 3.32157 3.40727 3.47185 3.49807 3.71937 4.09673 4.22485 4.50979 4.63193 4.69363 4.77299 5.01901 5.25275 5.33159 5.33805 5.36504 5.38474 5.43460 5.53889 5.60607 5.63548 5.71653 5.86005 6.07248 6.14748 6.23317 6.36869 6.52431 6.60643 6.65743 6.68468 6.83012 6.98118 7.35825 7.64506 7.71814 7.83589 8.39731 8.47453 9.22538 9.84737 10.40252 11.30637 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.004065 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.379871 B = 6886.301719 C = 7499.363253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.086 0.914 15 N -0.716 5.716 16 C 0.556 3.444 17 O -0.532 6.532 18 C -0.206 4.206 19 C -0.108 4.108 20 C -0.161 4.161 21 H 0.133 0.867 22 C 0.073 3.927 23 O -0.369 6.369 24 C 0.084 3.916 25 C 0.143 3.857 26 H 0.254 0.746 27 H 0.019 0.981 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.395 0.605 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.017 0.983 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 -19.295 0.491 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.104 0.896 15 N -0.366 5.366 16 C 0.341 3.659 17 O -0.408 6.408 18 C -0.209 4.209 19 C -0.146 4.146 20 C -0.180 4.180 21 H 0.151 0.849 22 C -0.004 4.004 23 O -0.288 6.288 24 C 0.008 3.992 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.228 0.772 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.035 0.965 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.791 -18.608 0.188 19.216 hybrid contribution -0.042 0.721 0.225 0.757 sum 4.749 -17.887 0.413 18.511 Atomic orbital electron populations 1.70038 1.05237 1.25499 1.54075 1.25014 0.95294 0.98378 1.00867 0.86269 0.79173 0.83495 0.77758 1.21379 1.21763 1.20370 1.19243 0.92840 0.84706 1.41284 0.91555 1.44003 1.35630 1.01034 1.50387 1.20850 0.88543 0.98592 0.87859 1.22185 1.00475 0.95154 1.00144 1.21676 0.96682 0.98654 0.98259 1.21781 0.97870 0.81117 0.97209 0.89606 1.46055 1.08876 1.15891 1.65796 1.18991 0.82823 0.86727 0.77379 1.90740 1.47206 1.49312 1.53530 1.23399 1.01478 0.95546 1.00518 1.23569 0.98486 1.03979 0.88536 1.24768 0.92516 0.97979 1.02751 0.84906 1.22963 0.93689 0.93440 0.90260 1.89203 1.24314 1.76410 1.38844 1.22851 0.88925 0.89604 0.97868 1.21165 0.97864 0.86838 0.92578 0.93654 0.96291 0.89224 0.92662 0.92412 0.93057 0.92199 0.77211 0.87029 0.87586 0.91571 0.88181 0.88342 0.91056 0.96498 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -7.13 9.59 -15.06 -0.14 -7.28 16 8 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 9 N -0.59 -15.08 2.99 -172.32 -0.52 -15.59 16 10 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -1.85 5.35 -26.69 -0.14 -1.99 16 13 C 0.13 2.28 2.60 -67.82 -0.18 2.10 16 14 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 15 N -0.72 -10.42 4.92 -53.70 -0.26 -10.68 16 16 C 0.56 8.75 7.42 -10.99 -0.08 8.67 16 17 O -0.53 -10.83 16.51 5.56 0.09 -10.74 16 18 C -0.21 -2.37 2.78 -154.09 -0.43 -2.80 16 19 C -0.11 -1.01 10.02 -25.35 -0.25 -1.26 16 20 C -0.16 -1.67 7.01 -87.67 -0.61 -2.29 16 21 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 22 C 0.07 0.64 7.46 37.94 0.28 0.92 16 23 O -0.37 -4.20 11.65 -35.23 -0.41 -4.62 16 24 C 0.08 0.81 7.03 37.94 0.27 1.08 16 25 C 0.14 3.15 6.09 -3.71 -0.02 3.13 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 2.39 6.04 -51.93 -0.31 2.07 16 29 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.39 4.40 8.12 -40.82 -0.33 4.07 16 34 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.90 7.61 -51.93 -0.40 0.51 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.34 7.94 -51.93 -0.41 0.93 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -33.18 331.00 -8.57 -41.75 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.47 Total: 2.03 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.58 Total: 1.44 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.16 Total: -52.03 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.32 Total: -15.35 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.18 -8.57 -41.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007375868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.562 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds