Wall clock time and date at job start Tue Mar 31 2020 01:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47106 * 299.99848 * 3 2 1 6 6 H 1.48501 * 109.47193 * 59.99699 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64861 * 14.73146 * 9 7 2 11 11 C 1.54918 * 104.83227 * 155.89300 * 10 9 7 12 12 C 1.55155 * 101.57900 * 37.01025 * 11 10 9 13 13 C 1.47026 * 125.65051 * 194.75620 * 9 7 2 14 14 H 1.08997 * 110.01420 * 300.52745 * 13 9 7 15 15 C 1.53004 * 109.87953 * 61.62092 * 13 9 7 16 16 N 1.46500 * 109.47099 * 182.40065 * 15 13 9 17 17 C 1.34773 * 120.00415 * 185.13583 * 16 15 13 18 18 O 1.21281 * 119.99580 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00587 * 179.97438 * 17 16 15 20 20 C 1.53001 * 119.80931 * 250.23231 * 19 17 16 21 21 C 1.52999 * 60.65218 * 247.68348 * 20 19 17 22 22 H 1.09000 * 119.80165 * 112.31007 * 21 20 19 23 23 C 1.54477 * 118.06814 * 269.58869 * 21 20 19 24 24 O 1.44423 * 104.80206 * 86.82827 * 23 21 20 25 25 C 1.46768 * 105.42282 * 319.29297 * 24 23 21 26 26 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 27 27 H 1.08995 * 110.36780 * 37.05750 * 10 9 7 28 28 H 1.09004 * 110.45993 * 274.77636 * 10 9 7 29 29 H 1.08989 * 111.00540 * 278.93638 * 11 10 9 30 30 H 1.09003 * 110.99897 * 155.07875 * 11 10 9 31 31 H 1.08999 * 110.71610 * 206.13276 * 12 11 10 32 32 H 1.09003 * 110.87526 * 82.93476 * 12 11 10 33 33 H 1.09003 * 109.47130 * 62.40019 * 15 13 9 34 34 H 1.08997 * 109.47023 * 302.39998 * 15 13 9 35 35 H 0.97003 * 119.99517 * 5.13160 * 16 15 13 36 36 H 1.09007 * 117.43137 * 355.36603 * 20 19 17 37 37 H 1.09003 * 117.43067 * 140.06222 * 20 19 17 38 38 H 1.08998 * 110.37262 * 205.65696 * 23 21 20 39 39 H 1.08999 * 110.37035 * 327.88804 * 23 21 20 40 40 H 1.08995 * 110.29191 * 282.46014 * 25 24 23 41 41 H 1.09005 * 111.53339 * 159.38302 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1073 -2.5529 -0.3046 11 6 -0.2460 -4.0223 -0.7753 12 6 0.7640 -4.7441 0.1555 13 6 1.8975 -3.7077 0.3054 14 1 2.7028 -3.9356 -0.3929 15 6 2.4318 -3.7247 1.7390 16 7 3.0506 -5.0238 2.0142 17 6 3.5004 -5.3072 3.2526 18 8 3.3933 -4.4865 4.1392 19 6 4.1363 -6.6437 3.5359 20 6 3.4022 -7.6663 4.4056 21 6 4.6856 -7.0195 4.9303 22 1 4.6404 -6.3366 5.7786 23 6 6.0287 -7.7203 4.6283 24 8 6.4271 -7.2132 3.3360 25 6 5.1955 -7.1644 2.5392 26 1 -0.4850 0.8401 -0.0004 27 1 -0.4069 -1.8701 -1.0996 28 1 -0.7091 -2.3821 0.5880 29 1 0.0430 -4.1265 -1.8210 30 1 -1.2590 -4.3905 -0.6128 31 1 1.1348 -5.6564 -0.3117 32 1 0.3121 -4.9640 1.1227 33 1 1.6096 -3.5590 2.4352 34 1 3.1743 -2.9358 1.8593 35 1 3.1365 -5.6800 1.3050 36 1 2.4612 -7.3557 4.8599 37 1 3.4550 -8.7123 4.1037 38 1 6.7706 -7.4601 5.3832 39 1 5.8921 -8.8010 4.5880 40 1 4.9307 -8.1627 2.1911 41 1 5.2915 -6.4805 1.6958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027895929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:07 Heat of formation + Delta-G solvation = -23.006056 kcal Electronic energy + Delta-G solvation = -22305.794827 eV Core-core repulsion = 18994.441479 eV Total energy + Delta-G solvation = -3311.353349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84930 -38.76404 -37.54004 -34.75125 -34.25646 -32.50052 -29.95606 -29.29243 -28.35443 -25.71947 -25.06942 -24.22750 -22.54751 -21.28857 -20.31330 -19.84999 -19.21591 -17.64659 -16.69302 -16.11154 -15.71933 -15.64018 -15.01656 -14.76596 -14.69828 -14.34298 -13.91778 -13.76000 -13.28823 -13.13144 -12.78197 -12.17902 -12.10473 -11.90613 -11.79430 -11.50368 -11.33698 -10.96325 -10.94870 -10.81600 -10.47785 -10.27002 -10.12243 -10.02277 -9.90904 -9.86277 -9.74166 -9.53319 -8.71325 -8.59710 -6.86159 -5.78787 -3.15553 2.56212 3.18671 3.33814 3.39538 3.45902 3.47594 3.68239 4.12049 4.23517 4.46516 4.65698 4.70570 4.77671 5.03256 5.29489 5.30472 5.34243 5.37799 5.38606 5.43727 5.50318 5.58109 5.60836 5.78235 5.84659 6.03036 6.10650 6.21542 6.32231 6.43083 6.51421 6.59204 6.67267 6.78490 7.02638 7.49249 7.59143 7.74164 7.77562 8.23315 8.42999 9.15575 9.76033 10.43086 11.33318 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.004137 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.106016 B = 6767.283252 C = 7443.919995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.716 5.716 17 C 0.553 3.447 18 O -0.538 6.538 19 C -0.208 4.208 20 C -0.110 4.110 21 C -0.158 4.158 22 H 0.131 0.869 23 C 0.074 3.926 24 O -0.373 6.373 25 C 0.085 3.915 26 H 0.253 0.747 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -18.685 4.496 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.016 4.016 16 N -0.366 5.366 17 C 0.338 3.662 18 O -0.415 6.415 19 C -0.211 4.211 20 C -0.147 4.147 21 C -0.177 4.177 22 H 0.149 0.851 23 C -0.003 4.003 24 O -0.292 6.292 25 C 0.009 3.991 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.980 -17.722 5.021 19.366 hybrid contribution 0.190 0.682 -0.131 0.720 sum 6.170 -17.040 4.890 18.771 Atomic orbital electron populations 1.69947 1.05040 1.25236 1.55874 1.24917 0.95676 0.97888 1.01301 0.86074 0.78972 0.83638 0.77272 1.20339 1.21667 1.21577 1.19037 0.90442 0.82162 1.44664 0.90578 1.44492 1.06454 1.01029 1.79306 1.21454 0.84785 0.90166 0.98859 1.23004 0.97553 0.99611 0.98541 1.22600 0.97139 0.96949 0.99693 1.21130 0.94547 0.88156 0.91818 0.94475 1.22286 0.97529 0.82491 0.99308 1.46050 1.60877 1.19149 1.10573 1.19006 0.78019 0.86242 0.82947 1.90719 1.56786 1.48692 1.45329 1.23322 1.04641 0.97666 0.95519 1.23160 0.96133 0.96886 0.98525 1.24343 0.93585 1.03101 0.96696 0.85066 1.22921 0.94102 0.97094 0.86173 1.89558 1.29521 1.86342 1.23782 1.23253 0.81796 1.00931 0.93136 0.93632 0.90967 0.95594 0.92267 0.92332 0.92411 0.91863 0.91552 0.91460 0.77107 0.87216 0.87700 0.88230 0.91681 0.90741 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.62 10.58 55.49 0.59 -26.03 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.43 9.76 -15.06 -0.15 -6.58 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.59 -14.55 3.13 -162.57 -0.51 -15.06 16 10 C 0.17 4.08 5.41 -2.52 -0.01 4.06 16 11 C -0.15 -2.68 7.09 -24.58 -0.17 -2.85 16 12 C -0.13 -2.05 6.10 -24.90 -0.15 -2.20 16 13 C 0.15 2.97 3.22 -66.95 -0.22 2.75 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.10 5.07 -4.04 -0.02 2.08 16 16 N -0.72 -10.76 5.18 -60.29 -0.31 -11.07 16 17 C 0.55 8.85 7.44 -10.99 -0.08 8.77 16 18 O -0.54 -11.09 16.84 5.56 0.09 -11.00 16 19 C -0.21 -2.42 2.80 -154.09 -0.43 -2.85 16 20 C -0.11 -0.98 9.87 -26.73 -0.26 -1.24 16 21 C -0.16 -1.64 6.90 -89.06 -0.61 -2.26 16 22 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 23 C 0.07 0.66 7.45 37.93 0.28 0.95 16 24 O -0.37 -4.46 11.72 -35.23 -0.41 -4.87 16 25 C 0.09 0.85 7.21 37.94 0.27 1.13 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 28 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.03 7.81 -51.93 -0.41 0.62 16 33 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 34 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 35 H 0.40 4.64 7.94 -40.82 -0.32 4.32 16 36 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 1.01 7.69 -51.93 -0.40 0.61 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -33.03 334.09 -8.71 -41.74 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.51 Total: 2.45 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.65 Total: 1.65 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.23 Total: -52.16 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.32 Total: -15.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.03 -8.71 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027895929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.735 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds