Wall clock time and date at job start Tue Mar 31 2020 01:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47106 * 299.99848 * 3 2 1 6 6 H 1.48501 * 109.47193 * 59.99699 * 3 2 1 7 7 C 1.38813 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99912 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64861 * 14.73146 * 9 7 2 11 11 C 1.54918 * 104.83227 * 155.89300 * 10 9 7 12 12 C 1.55155 * 101.57900 * 37.01025 * 11 10 9 13 13 C 1.47026 * 125.65051 * 194.75620 * 9 7 2 14 14 H 1.08997 * 110.01420 * 300.52745 * 13 9 7 15 15 C 1.53004 * 109.87953 * 61.62092 * 13 9 7 16 16 N 1.46500 * 109.47099 * 182.40065 * 15 13 9 17 17 C 1.34773 * 120.00415 * 185.13583 * 16 15 13 18 18 O 1.21281 * 119.99580 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00587 * 179.97438 * 17 16 15 20 20 C 1.53001 * 119.80931 * 250.23231 * 19 17 16 21 21 C 1.52999 * 60.65218 * 247.68348 * 20 19 17 22 22 H 1.09000 * 119.80165 * 112.31007 * 21 20 19 23 23 C 1.54477 * 118.06814 * 269.58869 * 21 20 19 24 24 O 1.44423 * 104.80206 * 86.82827 * 23 21 20 25 25 C 1.46768 * 105.42282 * 319.29297 * 24 23 21 26 26 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 27 27 H 1.08995 * 110.36780 * 37.05750 * 10 9 7 28 28 H 1.09004 * 110.45993 * 274.77636 * 10 9 7 29 29 H 1.08989 * 111.00540 * 278.93638 * 11 10 9 30 30 H 1.09003 * 110.99897 * 155.07875 * 11 10 9 31 31 H 1.08999 * 110.71610 * 206.13276 * 12 11 10 32 32 H 1.09003 * 110.87526 * 82.93476 * 12 11 10 33 33 H 1.09003 * 109.47130 * 62.40019 * 15 13 9 34 34 H 1.08997 * 109.47023 * 302.39998 * 15 13 9 35 35 H 0.97003 * 119.99517 * 5.13160 * 16 15 13 36 36 H 1.09007 * 117.43137 * 355.36603 * 20 19 17 37 37 H 1.09003 * 117.43067 * 140.06222 * 20 19 17 38 38 H 1.08998 * 110.37262 * 205.65696 * 23 21 20 39 39 H 1.08999 * 110.37035 * 327.88804 * 23 21 20 40 40 H 1.08995 * 110.29191 * 282.46014 * 25 24 23 41 41 H 1.09005 * 111.53339 * 159.38302 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1073 -2.5529 -0.3046 11 6 -0.2460 -4.0223 -0.7753 12 6 0.7640 -4.7441 0.1555 13 6 1.8975 -3.7077 0.3054 14 1 2.7028 -3.9356 -0.3929 15 6 2.4318 -3.7247 1.7390 16 7 3.0506 -5.0238 2.0142 17 6 3.5004 -5.3072 3.2526 18 8 3.3933 -4.4865 4.1392 19 6 4.1363 -6.6437 3.5359 20 6 3.4022 -7.6663 4.4056 21 6 4.6856 -7.0195 4.9303 22 1 4.6404 -6.3366 5.7786 23 6 6.0287 -7.7203 4.6283 24 8 6.4271 -7.2132 3.3360 25 6 5.1955 -7.1644 2.5392 26 1 -0.4850 0.8401 -0.0004 27 1 -0.4069 -1.8701 -1.0996 28 1 -0.7091 -2.3821 0.5880 29 1 0.0430 -4.1265 -1.8210 30 1 -1.2590 -4.3905 -0.6128 31 1 1.1348 -5.6564 -0.3117 32 1 0.3121 -4.9640 1.1227 33 1 1.6096 -3.5590 2.4352 34 1 3.1743 -2.9358 1.8593 35 1 3.1365 -5.6800 1.3050 36 1 2.4612 -7.3557 4.8599 37 1 3.4550 -8.7123 4.1037 38 1 6.7706 -7.4601 5.3832 39 1 5.8921 -8.8010 4.5880 40 1 4.9307 -8.1627 2.1911 41 1 5.2915 -6.4805 1.6958 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027895929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:06 Heat of formation + Delta-G solvation = -46.830477 kcal Electronic energy + Delta-G solvation = -22306.827932 eV Core-core repulsion = 18994.441479 eV Total energy + Delta-G solvation = -3312.386453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80553 -40.05502 -39.10760 -35.88533 -35.49425 -34.43273 -31.53760 -30.79091 -29.50012 -26.84348 -26.41517 -25.90008 -23.76994 -22.10553 -21.97991 -21.31529 -20.57888 -18.91798 -18.35297 -17.44524 -16.93556 -16.60269 -16.52432 -16.06165 -16.00913 -15.69656 -15.43485 -14.98408 -14.66938 -14.14355 -14.00027 -13.69470 -13.63442 -13.45133 -13.05316 -12.99064 -12.88367 -12.71000 -12.23272 -12.00657 -11.90967 -11.79417 -11.74569 -11.50886 -11.41561 -11.30583 -10.92302 -10.71384 -10.59857 -10.15510 -8.88718 -7.91748 -5.29300 1.40631 1.41427 1.43755 1.52951 2.01610 2.38912 2.46917 2.94604 3.28246 3.37637 3.41989 3.59974 3.79888 3.93542 3.95370 3.98222 4.01784 4.24519 4.37398 4.42013 4.51388 4.63357 4.66925 4.69727 4.70877 4.78643 4.89795 4.94010 4.98346 5.10034 5.12980 5.19603 5.32376 5.44697 5.53974 5.62983 5.64847 5.76464 6.20467 6.51578 7.06511 7.19114 7.73439 8.39014 9.19369 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.004137 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.106016 B = 6767.283252 C = 7443.919995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.111 4.111 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.129 3.871 16 N -0.699 5.699 17 C 0.548 3.452 18 O -0.595 6.595 19 C -0.223 4.223 20 C -0.080 4.080 21 C -0.167 4.167 22 H 0.110 0.890 23 C 0.076 3.924 24 O -0.402 6.402 25 C 0.089 3.911 26 H 0.248 0.752 27 H 0.036 0.964 28 H -0.010 1.010 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.030 0.970 35 H 0.417 0.583 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -22.425 3.790 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.041 3.959 14 H 0.071 0.929 15 C 0.003 3.997 16 N -0.350 5.350 17 C 0.335 3.665 18 O -0.476 6.476 19 C -0.227 4.227 20 C -0.117 4.117 21 C -0.186 4.186 22 H 0.128 0.872 23 C 0.000 4.000 24 O -0.322 6.322 25 C 0.013 3.987 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.009 0.991 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.254 0.746 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.986 -21.531 4.286 23.038 hybrid contribution -0.085 1.834 0.148 1.842 sum 6.901 -19.697 4.434 21.336 Atomic orbital electron populations 1.70143 1.06266 1.25352 1.57491 1.25669 0.96504 1.00948 1.02054 0.85135 0.78292 0.79894 0.76800 1.19269 1.21288 1.22240 1.19331 0.90718 0.83679 1.43308 0.90681 1.44763 1.06956 1.02175 1.79686 1.21277 0.84002 0.93661 0.96281 1.22868 0.99706 0.95109 0.99414 1.22592 0.95062 0.97390 0.99870 1.21351 0.96236 0.86842 0.91479 0.92895 1.21712 0.95556 0.83756 0.98712 1.45744 1.60089 1.17839 1.11342 1.19854 0.77014 0.87531 0.82095 1.90694 1.58968 1.50972 1.46982 1.23262 1.06267 0.96000 0.97161 1.23324 0.94804 0.97990 0.95586 1.24457 0.95537 1.03395 0.95221 0.87191 1.23096 0.93093 0.98599 0.85250 1.89530 1.30668 1.86917 1.25063 1.23404 0.80371 1.02825 0.92125 0.94274 0.94574 0.99146 0.90950 0.89837 0.87394 0.91747 0.94659 0.95198 0.74594 0.87964 0.83614 0.87746 0.88382 0.86832 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 10.58 21.65 0.23 -57.21 16 2 C -0.06 -3.35 5.47 84.86 0.46 -2.88 16 3 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.24 -13.61 9.76 84.04 0.82 -12.79 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -30.85 3.13 -668.24 -2.09 -32.94 16 10 C 0.17 8.39 5.41 86.86 0.47 8.86 16 11 C -0.13 -4.48 7.09 31.99 0.23 -4.25 16 12 C -0.11 -3.27 6.10 31.78 0.19 -3.08 16 13 C 0.15 5.64 3.22 45.34 0.15 5.79 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 15 C 0.13 5.10 5.07 86.38 0.44 5.53 16 16 N -0.70 -20.25 5.18 -463.06 -2.40 -22.65 16 17 C 0.55 17.35 7.44 87.66 0.65 18.00 16 18 O -0.60 -25.51 16.84 -3.03 -0.05 -25.56 16 19 C -0.22 -4.68 2.80 -51.91 -0.15 -4.83 16 20 C -0.08 -1.14 9.87 30.59 0.30 -0.84 16 21 C -0.17 -3.15 6.90 -9.78 -0.07 -3.22 16 22 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 23 C 0.08 1.14 7.45 72.48 0.54 1.68 16 24 O -0.40 -8.55 11.72 -148.98 -1.75 -10.30 16 25 C 0.09 1.47 7.21 72.49 0.52 1.99 16 26 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.04 1.98 6.94 -2.39 -0.02 1.96 16 28 H -0.01 -0.52 8.06 -2.39 -0.02 -0.54 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.06 1.91 7.81 -2.39 -0.02 1.89 16 33 H 0.03 1.60 8.08 -2.39 -0.02 1.58 16 34 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 35 H 0.42 8.51 7.94 -92.71 -0.74 7.77 16 36 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.66 7.69 -2.38 -0.02 1.64 16 Total: -1.00 -78.14 334.09 0.82 -77.32 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.29 Total: 12.35 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.56 Total: 9.97 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -4.26 Total: -112.80 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.80 Total: -35.86 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -78.14 0.82 -77.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027895929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.487 kcal (2) G-P(sol) polarization free energy of solvation -78.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds