Wall clock time and date at job start Tue Mar 31 2020 01:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21744 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.41794 * 120.00105 * 179.97438 * 16 15 14 19 19 C 1.33461 * 118.78646 * 180.02562 * 18 16 15 20 20 O 1.34345 * 123.07886 * 180.38966 * 19 18 16 21 21 C 1.45355 * 117.48413 * 343.69074 * 20 19 18 22 22 C 1.53488 * 108.26580 * 47.47349 * 21 20 19 23 23 C 1.50413 * 118.78811 * 359.72534 * 18 16 15 24 24 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 25 25 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 27 27 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 28 28 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 29 29 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 30 30 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 31 31 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 32 32 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 33 33 H 1.08001 * 118.45742 * 0.40150 * 19 18 16 34 34 H 1.08997 * 109.71080 * 167.16669 * 21 20 19 35 35 H 1.09000 * 109.70362 * 287.78447 * 21 20 19 36 36 H 1.09000 * 109.70300 * 56.99070 * 22 21 20 37 37 H 1.08999 * 109.70582 * 177.56691 * 22 21 20 38 38 H 1.09004 * 109.45795 * 282.36295 * 23 18 16 39 39 H 1.09001 * 109.45485 * 42.30693 * 23 18 16 40 40 H 1.09002 * 110.36346 * 322.70225 * 24 9 7 41 41 H 1.08999 * 110.37028 * 84.91483 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9981 -8.5873 -0.4854 18 6 3.9364 -8.2681 -1.6516 19 6 4.2832 -9.5459 -1.4843 20 8 5.4261 -10.0643 -1.9637 21 6 6.1302 -9.3062 -2.9846 22 6 6.2203 -7.8452 -2.5226 23 6 4.7936 -7.2924 -2.4104 24 6 1.9495 -3.7169 -0.2720 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5671 -2.1845 0.7439 27 1 -0.5328 -1.9641 -1.0279 28 1 -1.2640 -4.1759 -1.0702 29 1 -0.6329 -4.5159 0.5729 30 1 1.0852 -6.2033 0.3968 31 1 0.2467 -6.6302 -1.1141 32 1 2.9051 -5.9145 -1.7435 33 1 3.6135 -10.1936 -0.9380 34 1 7.1331 -9.7119 -3.1177 35 1 5.5832 -9.3609 -3.9258 36 1 6.7155 -7.7963 -1.5529 37 1 6.7828 -7.2630 -3.2524 38 1 4.3785 -7.1431 -3.4072 39 1 4.8160 -6.3402 -1.8803 40 1 2.8620 -3.6576 -0.8654 41 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028443235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:33 Heat of formation + Delta-G solvation = -42.945421 kcal Electronic energy + Delta-G solvation = -21862.076205 eV Core-core repulsion = 18549.858221 eV Total energy + Delta-G solvation = -3312.217984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76626 -39.21986 -37.60742 -34.78786 -34.26063 -32.43919 -31.82090 -29.76778 -28.26510 -26.05595 -25.74964 -24.45358 -23.14214 -21.36084 -20.06274 -19.85951 -18.92734 -18.03348 -16.79925 -16.66646 -15.98188 -15.54665 -15.42614 -14.80393 -14.63018 -14.56664 -14.17178 -13.69692 -13.56739 -13.29341 -13.07039 -12.77648 -12.32480 -11.99574 -11.71154 -11.63360 -11.35840 -11.28013 -10.97393 -10.89479 -10.80796 -10.38428 -10.13866 -9.99891 -9.86195 -9.69122 -9.65881 -8.96592 -8.61714 -8.57771 -6.82943 -5.72916 -3.05295 1.27302 2.90388 3.39093 3.39583 3.44183 3.46524 3.51380 4.30656 4.38181 4.49006 4.55258 4.82879 4.91311 5.06166 5.10121 5.25219 5.27615 5.29382 5.45784 5.53444 5.54359 5.71172 5.71921 5.81290 5.92622 5.98869 6.09625 6.11227 6.35965 6.49973 6.55219 6.55585 6.72074 6.92694 6.96289 7.55545 7.64536 7.68296 7.82488 8.25827 8.37505 9.21459 9.82176 10.49044 11.39255 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024454 B = 0.003508 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.753508 B = 7979.967927 C = 8951.836391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.078 0.922 14 C 0.133 3.867 15 N -0.723 5.723 16 C 0.569 3.431 17 O -0.566 6.566 18 C -0.313 4.313 19 C 0.154 3.846 20 O -0.313 6.313 21 C 0.052 3.948 22 C -0.157 4.157 23 C -0.076 4.076 24 C 0.143 3.857 25 H 0.252 0.748 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.180 0.820 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.746 -17.239 -7.308 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.137 4.137 13 H 0.097 0.903 14 C 0.010 3.990 15 N -0.374 5.374 16 C 0.359 3.641 17 O -0.449 6.449 18 C -0.318 4.318 19 C 0.087 3.913 20 O -0.223 6.223 21 C -0.022 4.022 22 C -0.194 4.194 23 C -0.114 4.114 24 C 0.016 3.984 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.236 0.764 33 H 0.197 0.803 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 9.294 -17.698 -6.813 21.119 hybrid contribution 0.620 1.582 -0.323 1.729 sum 9.914 -16.116 -7.135 20.222 Atomic orbital electron populations 1.69977 1.04922 1.25036 1.56733 1.24825 0.95695 0.97667 1.02169 0.86125 0.78690 0.83651 0.77477 1.21630 1.21757 1.20650 1.19057 0.91101 0.82605 1.43104 0.90492 1.44494 1.01737 1.00940 1.86124 1.21157 0.84413 0.88446 1.00825 1.22850 0.95344 0.99607 0.99545 1.22608 0.98537 0.92029 1.00566 0.90313 1.21361 0.84938 0.94074 0.98675 1.45990 1.23628 1.10766 1.56990 1.16570 0.85552 0.82189 0.79745 1.90793 1.55670 1.54861 1.43542 1.20089 1.01083 0.96150 1.14440 1.22963 0.84769 0.93684 0.89927 1.86268 1.34188 1.48316 1.53557 1.23563 0.97379 0.91740 0.89509 1.22225 0.97783 0.95926 1.03498 1.20335 0.93260 0.97727 1.00043 1.21557 0.94012 0.86632 0.96152 0.93750 0.94142 0.93369 0.92002 0.92203 0.91449 0.91782 0.76439 0.80343 0.87417 0.90834 0.90195 0.89427 0.90580 0.89928 0.94752 0.96365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.36 55.49 0.57 -26.50 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.43 10.26 -15.06 -0.15 -6.58 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.61 -15.48 3.39 -170.07 -0.58 -16.06 16 10 C 0.18 4.28 5.38 -3.07 -0.02 4.27 16 11 C -0.13 -2.49 6.42 -24.89 -0.16 -2.65 16 12 C -0.12 -1.99 3.10 -88.47 -0.27 -2.26 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 14 C 0.13 2.01 5.12 -4.04 -0.02 1.99 16 15 N -0.72 -9.82 5.32 -63.17 -0.34 -10.16 16 16 C 0.57 8.15 7.53 -14.90 -0.11 8.04 16 17 O -0.57 -9.95 15.92 5.15 0.08 -9.87 16 18 C -0.31 -3.53 5.69 -105.07 -0.60 -4.12 16 19 C 0.15 1.62 10.46 29.06 0.30 1.93 16 20 O -0.31 -2.91 10.48 -14.88 -0.16 -3.07 16 21 C 0.05 0.33 7.15 37.41 0.27 0.60 16 22 C -0.16 -1.04 6.25 -26.26 -0.16 -1.21 16 23 C -0.08 -0.66 5.10 -27.81 -0.14 -0.80 16 24 C 0.14 2.89 6.41 -2.53 -0.02 2.87 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.04 1.09 7.62 -51.93 -0.40 0.69 16 27 H 0.05 1.29 7.29 -51.93 -0.38 0.91 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 30 H 0.07 1.10 8.10 -51.93 -0.42 0.67 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.40 4.77 6.44 -40.82 -0.26 4.51 16 33 H 0.18 1.88 7.21 -52.49 -0.38 1.50 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.73 7.14 -51.93 -0.37 0.36 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 LS Contribution 329.97 15.07 4.97 4.97 Total: -1.00 -33.01 329.97 -8.04 -41.04 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.39 Total: 0.87 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.18 Total: 1.77 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.34 Total: -52.72 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.07 Total: -12.94 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.01 -8.04 -41.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028443235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.901 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds