Wall clock time and date at job start Tue Mar 31 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86790 * 120.00051 * 2 1 4 4 H 1.48502 * 109.47307 * 240.00169 * 3 2 1 5 5 H 1.48503 * 109.47224 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47342 * 120.00156 * 3 2 1 7 7 C 1.38822 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00008 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99808 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.84899 * 336.18650 * 10 9 7 12 12 C 1.53778 * 113.69271 * 107.46129 * 10 9 7 13 13 C 1.53783 * 87.08065 * 89.12432 * 12 10 9 14 14 H 1.08994 * 113.69273 * 270.87142 * 13 12 10 15 15 C 1.53006 * 113.61482 * 139.97925 * 13 12 10 16 16 N 1.46506 * 109.46624 * 87.50174 * 15 13 12 17 17 C 1.34778 * 119.99423 * 179.97438 * 16 15 13 18 18 O 1.21275 * 120.00393 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99610 * 180.02562 * 17 16 15 20 20 C 1.53002 * 120.24416 * 251.18861 * 19 17 16 21 21 C 1.52998 * 60.65285 * 247.86623 * 20 19 17 22 22 H 1.08994 * 120.24739 * 112.14162 * 21 20 19 23 23 C 1.54483 * 118.06796 * 269.59333 * 21 20 19 24 24 O 1.44428 * 104.89902 * 38.81848 * 23 21 20 25 25 C 1.44688 * 105.13885 * 40.49479 * 24 23 21 26 26 C 1.53780 * 87.08055 * 25.43536 * 13 12 10 27 27 H 0.96994 * 120.00325 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00017 * 359.97438 * 9 7 2 29 29 H 1.09001 * 113.61564 * 334.58088 * 12 10 9 30 30 H 1.09001 * 113.61600 * 203.67390 * 12 10 9 31 31 H 1.08999 * 109.47204 * 327.50842 * 15 13 12 32 32 H 1.08995 * 109.47170 * 207.50291 * 15 13 12 33 33 H 0.96995 * 120.00054 * 0.02562 * 16 15 13 34 34 H 1.09007 * 117.43116 * 140.19068 * 20 19 17 35 35 H 1.09002 * 117.43689 * 355.54511 * 20 19 17 36 36 H 1.09002 * 110.37322 * 157.70362 * 23 21 20 37 37 H 1.08999 * 110.37312 * 279.93039 * 23 21 20 38 38 H 1.08996 * 110.35300 * 200.67684 * 25 24 23 39 39 H 1.08999 * 110.35366 * 78.36394 * 25 24 23 40 40 H 1.08991 * 113.62039 * 89.11792 * 26 13 12 41 41 H 1.09007 * 113.61202 * 219.93447 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 1 3.0659 -3.5637 -0.4063 12 6 2.0002 -4.4038 1.3413 13 6 0.7216 -5.0809 0.8198 14 1 -0.1900 -4.5277 1.0452 15 6 0.6218 -6.5639 1.1826 16 7 -0.0095 -6.7035 2.4973 17 6 -0.2033 -7.9285 3.0250 18 8 0.1452 -8.9151 2.4118 19 6 -0.8531 -8.0722 4.3771 20 6 -0.0260 -8.5119 5.5868 21 6 -1.1015 -9.4488 5.0332 22 1 -0.8192 -10.3845 4.5509 23 6 -2.5300 -9.3371 5.6106 24 8 -2.7443 -7.9214 5.8003 25 6 -2.1608 -7.2916 4.6356 26 6 1.2607 -4.8286 -0.5982 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0016 29 1 1.8303 -3.7507 2.1973 30 1 2.8295 -5.0948 1.4928 31 1 1.6207 -6.9991 1.2112 32 1 0.0213 -7.0814 0.4344 33 1 -0.2885 -5.9145 2.9875 34 1 -0.2289 -8.0215 6.5390 35 1 1.0151 -8.7833 5.4116 36 1 -3.2570 -9.7397 4.9053 37 1 -2.5962 -9.8619 6.5637 38 1 -1.9429 -6.2435 4.8406 39 1 -2.8312 -7.3805 3.7808 40 1 1.8877 -5.6356 -0.9770 41 1 0.4935 -4.5197 -1.3083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086372000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:09 Heat of formation + Delta-G solvation = -17.713521 kcal Electronic energy + Delta-G solvation = -21531.818981 eV Core-core repulsion = 18220.695133 eV Total energy + Delta-G solvation = -3311.123847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 4.64 seconds Orbital eigenvalues (eV) -41.12484 -39.28951 -38.34226 -34.87635 -34.55969 -33.23517 -30.33524 -29.33494 -27.42694 -26.15226 -25.09717 -23.97545 -22.99960 -21.64444 -21.05020 -19.84929 -18.43453 -17.82932 -17.25977 -16.41736 -15.93394 -15.75810 -15.45239 -15.18905 -14.79976 -14.27053 -14.12801 -13.80614 -13.38711 -13.14809 -13.06411 -12.91014 -12.33816 -12.30457 -11.95802 -11.84034 -11.44968 -11.07780 -10.93964 -10.84793 -10.60910 -10.49254 -10.23150 -10.12216 -9.97513 -9.80709 -9.72004 -9.50008 -9.07368 -8.90997 -7.03553 -5.83547 -3.12783 2.33206 2.93613 3.17831 3.40590 3.45244 3.46058 3.51102 4.14585 4.18587 4.45156 4.53265 4.55158 4.81222 5.00534 5.03044 5.05150 5.19110 5.23059 5.29308 5.32022 5.38991 5.42204 5.42497 5.57650 5.66131 5.72423 5.82558 5.91186 6.06398 6.17400 6.27871 6.33322 6.34986 6.54990 6.70752 6.85752 7.00390 7.42367 7.65861 8.09941 8.35625 9.46254 10.03451 10.37685 11.38813 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.003086 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.245174 B = 9070.946331 C = 9694.949061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.169 4.169 13 C -0.120 4.120 14 H 0.093 0.907 15 C 0.130 3.870 16 N -0.716 5.716 17 C 0.559 3.441 18 O -0.543 6.543 19 C -0.216 4.216 20 C -0.103 4.103 21 C -0.164 4.164 22 H 0.133 0.867 23 C 0.069 3.931 24 O -0.368 6.368 25 C 0.084 3.916 26 C -0.148 4.148 27 H 0.257 0.743 28 H 0.385 0.615 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.404 0.596 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -18.029 9.860 20.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.210 4.210 13 C -0.138 4.138 14 H 0.112 0.888 15 C 0.007 3.993 16 N -0.366 5.366 17 C 0.344 3.656 18 O -0.421 6.421 19 C -0.219 4.219 20 C -0.140 4.140 21 C -0.183 4.183 22 H 0.151 0.849 23 C -0.007 4.007 24 O -0.286 6.286 25 C 0.007 3.993 26 C -0.188 4.188 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.238 0.762 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.690 -18.426 9.541 20.924 hybrid contribution 0.076 1.161 -0.016 1.164 sum -2.614 -17.265 9.526 19.891 Atomic orbital electron populations 1.69645 1.05143 1.25952 1.57330 1.24765 0.95543 0.97799 1.02701 0.86241 0.78527 0.83343 0.77910 1.21183 1.21662 1.21198 1.19245 0.91098 0.83973 1.43186 0.91040 1.42161 1.05674 0.99427 1.87154 1.21047 0.95116 0.85585 0.92722 0.91959 1.23895 0.95612 0.99636 1.01824 1.22717 0.99645 0.92782 0.98703 0.88841 1.21528 0.97618 0.97198 0.82918 1.46006 1.61694 1.07850 1.21048 1.18983 0.78266 0.83392 0.84916 1.90697 1.51620 1.37960 1.61800 1.23153 1.01776 1.02099 0.94918 1.22908 0.96458 0.99225 0.95382 1.24181 0.96499 0.94565 1.03067 0.84918 1.22992 0.92911 0.83110 1.01732 1.89242 1.79496 1.18426 1.41428 1.22875 0.89603 0.97526 0.89296 1.23449 1.00517 0.99727 0.95071 0.93357 0.78111 0.91465 0.91409 0.91502 0.91751 0.76175 0.87306 0.87245 0.90985 0.88185 0.87923 0.90798 0.90468 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.11 5.31 -52.64 -0.28 -17.39 16 10 C 0.17 3.20 4.56 -67.12 -0.31 2.90 16 11 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 12 C -0.17 -2.73 7.43 -25.92 -0.19 -2.92 16 13 C -0.12 -1.73 3.63 -89.80 -0.33 -2.06 16 14 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 15 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 16 N -0.72 -8.54 5.52 -60.29 -0.33 -8.87 16 17 C 0.56 7.21 7.51 -10.98 -0.08 7.12 16 18 O -0.54 -8.89 16.85 5.56 0.09 -8.80 16 19 C -0.22 -2.19 2.87 -154.09 -0.44 -2.64 16 20 C -0.10 -0.89 9.71 -26.73 -0.26 -1.15 16 21 C -0.16 -1.47 6.93 -89.05 -0.62 -2.09 16 22 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 23 C 0.07 0.55 7.53 37.94 0.29 0.83 16 24 O -0.37 -3.73 11.34 -35.23 -0.40 -4.13 16 25 C 0.08 0.78 7.10 37.93 0.27 1.05 16 26 C -0.15 -2.31 7.39 -25.92 -0.19 -2.50 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.38 9.85 7.90 -40.82 -0.32 9.53 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 31 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 4.20 8.34 -40.82 -0.34 3.86 16 34 H 0.11 0.86 8.06 -51.92 -0.42 0.44 16 35 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -31.63 342.39 -8.70 -40.34 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.51 Total: 10.53 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.13 Total: -6.98 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.11 Total: -53.07 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.31 Total: -12.93 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.63 -8.70 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086372000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.622 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.64 seconds