Wall clock time and date at job start Tue Mar 31 2020 01:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47090 * 269.99450 * 3 2 1 5 5 H 1.48496 * 109.47006 * 29.99916 * 3 2 1 6 6 H 1.48502 * 109.46997 * 149.99687 * 3 2 1 7 7 C 1.37887 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99951 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99683 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46667 * 180.02562 * 9 7 2 11 11 C 1.39875 * 126.04085 * 90.02476 * 10 9 7 12 12 N 1.30829 * 108.20298 * 179.73658 * 11 10 9 13 13 N 1.40087 * 108.20855 * 359.97438 * 12 11 10 14 14 C 1.46500 * 126.04101 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47137 * 305.02538 * 14 13 12 16 16 O 1.42900 * 109.47130 * 179.97438 * 15 14 13 17 17 C 1.42904 * 113.99429 * 179.97438 * 16 15 14 18 18 H 1.09003 * 109.48132 * 55.00432 * 17 16 15 19 19 C 1.53096 * 109.47480 * 175.02068 * 17 16 15 20 20 C 1.53183 * 109.16262 * 177.57817 * 19 17 16 21 21 C 1.53175 * 109.04423 * 303.04444 * 20 19 17 22 22 C 1.53089 * 109.16825 * 56.97394 * 21 20 19 23 23 O 1.42895 * 109.48481 * 294.97490 * 17 16 15 24 24 C 1.34946 * 107.92254 * 0.02562 * 13 12 11 25 25 H 0.96993 * 120.00287 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47603 * 60.00399 * 9 7 2 27 27 H 1.08999 * 109.47227 * 299.99498 * 9 7 2 28 28 H 1.08004 * 125.89555 * 359.71602 * 11 10 9 29 29 H 1.08999 * 109.47256 * 65.02421 * 14 13 12 30 30 H 1.09000 * 109.47376 * 185.02577 * 14 13 12 31 31 H 1.08995 * 109.47327 * 300.00392 * 15 14 13 32 32 H 1.09000 * 109.46956 * 59.99781 * 15 14 13 33 33 H 1.08999 * 109.52638 * 297.49918 * 19 17 16 34 34 H 1.09005 * 109.52199 * 57.68836 * 19 17 16 35 35 H 1.08998 * 109.54291 * 183.16580 * 20 19 17 36 36 H 1.08999 * 109.52926 * 62.90722 * 20 19 17 37 37 H 1.09000 * 109.51921 * 297.05974 * 21 20 19 38 38 H 1.08999 * 109.57215 * 176.91040 * 21 20 19 39 39 H 1.08999 * 109.48339 * 182.41317 * 22 21 20 40 40 H 1.08996 * 109.49036 * 62.37392 * 22 21 20 41 41 H 1.07999 * 126.12479 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0010 11 6 4.2892 -3.3903 -1.1301 12 7 4.7094 -4.5627 -0.7294 13 7 4.7154 -4.5703 0.6714 14 6 5.1175 -5.6905 1.5256 15 6 4.3059 -6.9329 1.1530 16 8 4.6986 -8.0257 1.9858 17 6 3.9965 -9.2414 1.7186 18 1 4.1003 -9.4969 0.6640 19 6 4.5802 -10.3671 2.5765 20 6 3.7838 -11.6521 2.3296 21 6 2.3063 -11.3916 2.6385 22 6 1.8107 -10.2265 1.7780 23 8 2.6131 -9.0721 2.0340 24 6 4.2844 -3.3637 1.0951 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8889 28 1 4.1743 -3.0756 -2.1569 29 1 6.1789 -5.8936 1.3828 30 1 4.9335 -5.4359 2.5693 31 1 3.2446 -6.7298 1.2957 32 1 4.4900 -7.1875 0.1092 33 1 5.6239 -10.5275 2.3061 34 1 4.5137 -10.0943 3.6297 35 1 4.1582 -12.4435 2.9789 36 1 3.8909 -11.9525 1.2873 37 1 2.1937 -11.1395 3.6930 38 1 1.7233 -12.2846 2.4134 39 1 0.7715 -10.0088 2.0246 40 1 1.8858 -10.4950 0.7243 41 1 4.1755 -3.0515 2.1232 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:25 Heat of formation + Delta-G solvation = -26.648930 kcal Electronic energy + Delta-G solvation = -21252.181028 eV Core-core repulsion = 17940.669713 eV Total energy + Delta-G solvation = -3311.511315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54784 -39.92891 -37.36674 -34.06374 -33.94258 -32.78938 -30.88491 -30.63491 -28.88069 -26.68826 -25.07206 -23.61936 -23.20859 -22.26542 -20.74220 -20.08030 -19.25461 -17.75793 -17.05563 -16.67605 -16.30135 -15.98444 -15.24914 -15.10527 -14.69768 -14.32457 -14.07534 -13.82693 -13.47722 -13.14456 -13.10858 -12.76558 -12.56557 -12.31742 -12.05758 -11.76354 -11.59662 -11.49952 -11.38876 -11.27841 -10.89894 -10.68485 -10.39681 -10.02500 -10.00680 -9.80548 -9.68662 -9.27020 -8.81015 -8.49376 -7.46515 -5.98524 -3.95966 2.41945 2.72011 3.27489 3.34856 3.42305 3.45631 3.64237 3.73214 4.37538 4.39667 4.49333 4.52136 4.57128 4.68956 4.79576 4.98221 5.02154 5.21389 5.28655 5.30034 5.33068 5.36333 5.43134 5.49207 5.54705 5.58410 5.62548 5.76092 5.81344 5.85773 6.32725 6.44094 6.74496 6.77397 6.96118 7.12335 7.32151 7.48435 7.64763 7.82452 8.33126 8.62746 9.08860 9.63048 11.14985 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.028221 B = 0.002936 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.946428 B = 9533.286455 C =10159.690291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.071 0.929 9 C 0.051 3.949 10 C -0.176 4.176 11 C 0.052 3.948 12 N -0.315 5.315 13 N -0.386 5.386 14 C 0.148 3.852 15 C 0.053 3.947 16 O -0.367 6.367 17 C 0.259 3.741 18 H 0.054 0.946 19 C -0.140 4.140 20 C -0.120 4.120 21 C -0.160 4.160 22 C 0.071 3.929 23 O -0.404 6.404 24 C 0.037 3.963 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.178 0.822 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 -22.289 5.093 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.089 0.911 9 C 0.013 3.987 10 C -0.186 4.186 11 C -0.134 4.134 12 N -0.136 5.136 13 N -0.172 5.172 14 C 0.025 3.975 15 C -0.024 4.024 16 O -0.286 6.286 17 C 0.163 3.837 18 H 0.071 0.929 19 C -0.178 4.178 20 C -0.158 4.158 21 C -0.198 4.198 22 C -0.006 4.006 23 O -0.325 6.325 24 C -0.106 4.106 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.195 0.805 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.070 0.930 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.751 -23.246 5.059 25.711 hybrid contribution -0.205 1.441 -0.004 1.456 sum 9.546 -21.805 5.055 24.334 Atomic orbital electron populations 1.69910 1.06301 1.26783 1.51407 1.25027 0.94713 0.99015 0.94783 0.86799 0.80367 0.83716 0.78555 1.20258 1.21489 1.18920 1.21079 0.88927 0.94357 1.50278 0.91090 1.18113 0.96560 0.87241 0.96792 1.20489 1.07028 1.00290 0.90809 1.23783 0.98534 0.90903 1.00148 1.77120 1.25821 1.21970 0.88721 1.48129 1.53853 1.10689 1.04534 1.21146 0.99182 0.83764 0.93378 1.22702 0.99572 0.85827 0.94329 1.87892 1.59286 1.19559 1.61866 1.22911 0.79559 0.84696 0.96520 0.92874 1.22026 1.00442 0.93505 1.01823 1.21592 0.94926 0.97007 1.02253 1.22255 0.96620 0.99226 1.01704 1.22527 0.95008 0.84771 0.98248 1.87849 1.19772 1.37618 1.87269 1.22233 1.02248 0.85829 1.00282 0.92788 0.95913 0.96043 0.80486 0.89772 0.88236 0.91458 0.91811 0.90001 0.89995 0.90644 0.91531 0.90664 0.90445 0.88320 0.92985 0.81513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.51 -14.59 9.65 -34.44 -0.33 -14.92 16 8 H 0.07 2.25 7.98 -52.49 -0.42 1.83 16 9 C 0.05 1.24 4.53 -29.03 -0.13 1.11 16 10 C -0.18 -3.78 5.29 -105.05 -0.56 -4.34 16 11 C 0.05 1.05 11.96 -17.37 -0.21 0.84 16 12 N -0.31 -6.08 12.42 30.63 0.38 -5.70 16 13 N -0.39 -6.79 3.68 -61.37 -0.23 -7.02 16 14 C 0.15 2.01 6.88 -4.04 -0.03 1.98 16 15 C 0.05 0.73 5.99 37.16 0.22 0.95 16 16 O -0.37 -4.73 10.27 -59.04 -0.61 -5.34 16 17 C 0.26 2.86 3.20 37.21 0.12 2.98 16 18 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 19 C -0.14 -1.16 5.79 -26.59 -0.15 -1.32 16 20 C -0.12 -0.76 6.03 -26.55 -0.16 -0.92 16 21 C -0.16 -1.06 6.14 -26.59 -0.16 -1.22 16 22 C 0.07 0.61 6.84 37.20 0.25 0.86 16 23 O -0.40 -5.00 10.03 -59.04 -0.59 -5.60 16 24 C 0.04 0.70 11.36 -17.22 -0.20 0.50 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.54 7.20 -51.93 -0.37 0.16 16 27 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 28 H 0.18 3.14 8.06 -52.48 -0.42 2.72 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.07 1.06 7.74 -51.93 -0.40 0.66 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 LS Contribution 340.24 15.07 5.13 5.13 Total: -1.00 -33.63 340.24 -7.91 -41.54 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.67 Total: -0.89 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.43 Total: -11.69 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.93 Total: -40.04 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.20 Total: -10.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.63 -7.91 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.893 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds