Wall clock time and date at job start Tue Mar 31 2020 02:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99469 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99564 * 3 2 1 5 5 H 1.48503 * 109.47206 * 29.99916 * 3 2 1 6 6 H 1.48501 * 109.46868 * 150.00052 * 3 2 1 7 7 C 1.38808 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99908 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00261 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00385 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47447 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61235 * 175.00366 * 11 10 9 13 13 C 1.53784 * 87.08103 * 139.98582 * 12 11 10 14 14 N 1.46499 * 113.61758 * 89.11402 * 13 12 11 15 15 C 1.34777 * 119.99665 * 156.80808 * 14 13 12 16 16 O 1.21613 * 120.00251 * 359.72091 * 15 14 13 17 17 C 1.47102 * 119.99517 * 179.72418 * 15 14 13 18 18 C 1.32093 * 118.87349 * 179.73149 * 17 15 14 19 19 C 1.50262 * 122.57715 * 180.10969 * 18 17 15 20 20 O 1.42892 * 110.14925 * 344.83169 * 19 18 17 21 21 C 1.43268 * 113.10027 * 50.31608 * 20 19 18 22 22 C 1.50415 * 118.87858 * 359.97438 * 17 15 14 23 23 C 1.53790 * 87.17067 * 334.52461 * 13 12 11 24 24 H 0.96998 * 120.00468 * 359.97438 * 1 2 3 25 25 H 0.97007 * 120.00191 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.46429 * 60.00194 * 10 9 7 27 27 H 1.08997 * 109.47165 * 300.00582 * 10 9 7 28 28 H 1.09004 * 112.84734 * 43.80616 * 11 10 9 29 29 H 1.08994 * 113.61920 * 25.43364 * 12 11 10 30 30 H 1.09000 * 113.60993 * 254.52633 * 12 11 10 31 31 H 1.09000 * 113.61503 * 219.93823 * 13 12 11 32 32 H 0.97001 * 119.99790 * 336.52521 * 14 13 12 33 33 H 1.07995 * 118.71100 * 0.36613 * 18 17 15 34 34 H 1.09010 * 109.50783 * 224.51910 * 19 18 17 35 35 H 1.08999 * 109.07265 * 104.86934 * 19 18 17 36 36 H 1.09001 * 109.63912 * 171.47344 * 21 20 19 37 37 H 1.09008 * 109.63472 * 50.85953 * 21 20 19 38 38 H 1.09002 * 109.45390 * 283.37365 * 22 17 15 39 39 H 1.09001 * 109.45267 * 43.31324 * 22 17 15 40 40 H 1.08991 * 113.61523 * 140.03114 * 23 13 12 41 41 H 1.09003 * 113.60928 * 270.93052 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4705 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1124 -2.4706 0.0011 11 6 5.6165 -2.1909 0.0009 12 6 6.4787 -3.4583 0.1247 13 6 7.4244 -2.8208 -0.9069 14 7 8.4711 -1.9888 -0.3082 15 6 9.6135 -1.7536 -0.9834 16 8 9.7776 -2.2362 -2.0876 17 6 10.6620 -0.9132 -0.3848 18 6 11.7750 -0.7016 -1.0638 19 6 12.9000 0.1403 -0.5313 20 8 12.4496 0.9181 0.5794 21 6 11.7661 0.1406 1.5698 22 6 10.4322 -0.3287 0.9820 23 6 6.2121 -2.0188 -1.4094 24 1 -0.4851 0.8400 0.0004 25 1 3.8647 -0.3618 -0.0004 26 1 3.8487 -3.0431 -0.8882 27 1 3.8494 -3.0412 0.8918 28 1 5.9001 -1.4002 0.6955 29 1 5.9838 -4.3601 -0.2354 30 1 6.9288 -3.5856 1.1093 31 1 7.8133 -3.5287 -1.6388 32 1 8.3401 -1.6038 0.5725 33 1 11.8789 -1.1479 -2.0418 34 1 13.2599 0.8056 -1.3163 35 1 13.7119 -0.5122 -0.2101 36 1 11.5820 0.7523 2.4530 37 1 12.3725 -0.7242 1.8394 38 1 9.7511 0.5187 0.9046 39 1 9.9958 -1.0868 1.6323 40 1 6.4470 -0.9851 -1.6626 41 1 5.6443 -2.5280 -2.1882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282003639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:52 Heat of formation + Delta-G solvation = -33.594822 kcal Electronic energy + Delta-G solvation = -21545.844251 eV Core-core repulsion = 18234.031739 eV Total energy + Delta-G solvation = -3311.812512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69552 -39.51293 -38.28275 -34.76345 -34.21751 -33.10505 -31.50509 -31.10093 -27.52060 -26.36794 -25.63194 -24.33882 -23.21603 -21.87224 -21.35793 -19.27922 -18.83399 -17.93653 -17.53606 -16.75657 -16.12037 -15.67057 -15.54767 -15.03138 -14.82383 -14.42890 -14.31950 -13.97689 -13.83454 -13.45115 -13.15921 -12.90580 -12.64710 -12.47805 -12.32925 -12.01106 -11.80481 -11.43738 -11.26483 -10.89981 -10.68998 -10.47813 -10.28731 -10.19915 -9.94816 -9.85169 -9.58002 -9.54027 -9.10670 -8.87397 -7.21545 -5.76448 -3.11490 0.98357 2.90732 3.00403 3.36768 3.40175 3.42534 3.45072 4.21637 4.27395 4.39685 4.55421 4.59236 4.64973 4.73294 4.79667 4.89771 4.97762 4.98562 5.06908 5.15288 5.25094 5.45744 5.53279 5.61050 5.67066 5.79833 5.83031 5.86202 5.93207 6.03779 6.09561 6.12025 6.23822 6.52712 6.60004 6.67618 6.80918 7.32423 8.00308 8.01561 8.42982 9.22393 9.94941 10.15122 11.42177 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.003490 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.673535 B = 8020.483060 C = 8816.272561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.167 3.833 11 C -0.119 4.119 12 C -0.135 4.135 13 C 0.114 3.886 14 N -0.704 5.704 15 C 0.553 3.447 16 O -0.543 6.543 17 C -0.167 4.167 18 C -0.114 4.114 19 C 0.085 3.915 20 O -0.376 6.376 21 C 0.060 3.940 22 C -0.123 4.123 23 C -0.141 4.141 24 H 0.259 0.741 25 H 0.360 0.640 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.401 0.599 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.415 -3.061 2.721 27.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.040 3.960 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.009 3.991 14 N -0.354 5.354 15 C 0.341 3.659 16 O -0.421 6.421 17 C -0.170 4.170 18 C -0.134 4.134 19 C 0.008 3.992 20 O -0.295 6.295 21 C -0.016 4.016 22 C -0.160 4.160 23 C -0.180 4.180 24 H 0.069 0.931 25 H 0.193 0.807 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.237 0.763 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 27.296 -3.310 1.955 27.565 hybrid contribution 0.201 1.140 0.361 1.213 sum 27.497 -2.169 2.315 27.679 Atomic orbital electron populations 1.69701 1.05104 1.25807 1.57741 1.24677 0.95242 0.97212 1.02136 0.86529 0.79100 0.84978 0.77788 1.21084 1.21727 1.20471 1.19078 0.80740 0.94724 1.42803 0.89255 1.42703 1.03984 1.02296 1.91126 1.20614 0.87631 0.89238 0.98538 1.22871 0.96505 0.97312 0.97103 1.23288 0.96588 0.98611 0.98885 1.21965 0.86917 0.93467 0.96715 1.45622 1.16651 1.51979 1.21188 1.18390 0.82012 0.80395 0.85058 1.90785 1.79896 1.51613 1.19823 1.20882 0.95968 1.02074 0.98038 1.23727 0.94138 0.95402 1.00130 1.21610 0.93731 0.94428 0.89403 1.88155 1.75347 1.34571 1.31413 1.22667 0.91476 0.96185 0.91321 1.21114 0.99909 1.01552 0.93406 1.23501 0.95873 1.00932 0.97673 0.93071 0.80740 0.95304 0.95560 0.89601 0.88379 0.91153 0.88170 0.76336 0.84582 0.86859 0.90857 0.87864 0.92405 0.89081 0.89515 0.91476 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.71 13.97 55.49 0.78 -28.94 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 22.37 27.74 -169.99 -4.71 17.65 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.76 -18.06 5.41 -59.91 -0.32 -18.38 16 10 C 0.17 3.15 6.10 -4.04 -0.02 3.13 16 11 C -0.12 -1.71 3.65 -89.67 -0.33 -2.03 16 12 C -0.14 -1.51 7.38 -25.92 -0.19 -1.70 16 13 C 0.11 1.38 4.29 -67.11 -0.29 1.09 16 14 N -0.70 -7.71 5.21 -54.19 -0.28 -7.99 16 15 C 0.55 6.90 7.73 -12.66 -0.10 6.80 16 16 O -0.54 -8.67 15.68 5.27 0.08 -8.59 16 17 C -0.17 -1.63 5.86 -103.09 -0.60 -2.24 16 18 C -0.11 -1.02 9.58 -36.44 -0.35 -1.37 16 19 C 0.08 0.58 7.04 35.79 0.25 0.83 16 20 O -0.38 -3.27 10.83 -35.23 -0.38 -3.66 16 21 C 0.06 0.40 6.88 37.22 0.26 0.65 16 22 C -0.12 -0.89 5.29 -27.95 -0.15 -1.04 16 23 C -0.14 -1.98 7.45 -25.77 -0.19 -2.17 16 24 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 25 H 0.36 8.41 5.53 -40.82 -0.23 8.19 16 26 H 0.03 0.56 7.85 -51.93 -0.41 0.15 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.29 7.50 -51.93 -0.39 0.90 16 32 H 0.40 3.53 7.01 -40.82 -0.29 3.24 16 33 H 0.14 1.28 7.29 -52.49 -0.38 0.90 16 34 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.32 8.09 -51.92 -0.42 -0.10 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.48 7.31 -51.93 -0.38 0.10 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -35.03 334.87 -8.06 -43.09 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.30 Total: 6.97 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.97 Total: -5.20 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.17 Total: -55.31 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.30 Total: -12.24 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.03 -8.06 -43.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282003639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.494 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds