Wall clock time and date at job start Tue Mar 31 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99469 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99564 * 3 2 1 5 5 H 1.48503 * 109.47206 * 29.99916 * 3 2 1 6 6 H 1.48501 * 109.46868 * 150.00052 * 3 2 1 7 7 C 1.38808 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99908 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00261 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00385 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47447 * 180.02562 * 10 9 7 12 12 C 1.53785 * 113.61235 * 175.00366 * 11 10 9 13 13 C 1.53784 * 87.08103 * 139.98582 * 12 11 10 14 14 N 1.46499 * 113.61758 * 89.11402 * 13 12 11 15 15 C 1.34777 * 119.99665 * 156.80808 * 14 13 12 16 16 O 1.21613 * 120.00251 * 359.72091 * 15 14 13 17 17 C 1.47102 * 119.99517 * 179.72418 * 15 14 13 18 18 C 1.32093 * 118.87349 * 179.73149 * 17 15 14 19 19 C 1.50262 * 122.57715 * 180.10969 * 18 17 15 20 20 O 1.42892 * 110.14925 * 344.83169 * 19 18 17 21 21 C 1.43268 * 113.10027 * 50.31608 * 20 19 18 22 22 C 1.50415 * 118.87858 * 359.97438 * 17 15 14 23 23 C 1.53790 * 87.17067 * 334.52461 * 13 12 11 24 24 H 0.96998 * 120.00468 * 359.97438 * 1 2 3 25 25 H 0.97007 * 120.00191 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.46429 * 60.00194 * 10 9 7 27 27 H 1.08997 * 109.47165 * 300.00582 * 10 9 7 28 28 H 1.09004 * 112.84734 * 43.80616 * 11 10 9 29 29 H 1.08994 * 113.61920 * 25.43364 * 12 11 10 30 30 H 1.09000 * 113.60993 * 254.52633 * 12 11 10 31 31 H 1.09000 * 113.61503 * 219.93823 * 13 12 11 32 32 H 0.97001 * 119.99790 * 336.52521 * 14 13 12 33 33 H 1.07995 * 118.71100 * 0.36613 * 18 17 15 34 34 H 1.09010 * 109.50783 * 224.51910 * 19 18 17 35 35 H 1.08999 * 109.07265 * 104.86934 * 19 18 17 36 36 H 1.09001 * 109.63912 * 171.47344 * 21 20 19 37 37 H 1.09008 * 109.63472 * 50.85953 * 21 20 19 38 38 H 1.09002 * 109.45390 * 283.37365 * 22 17 15 39 39 H 1.09001 * 109.45267 * 43.31324 * 22 17 15 40 40 H 1.08991 * 113.61523 * 140.03114 * 23 13 12 41 41 H 1.09003 * 113.60928 * 270.93052 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4705 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1124 -2.4706 0.0011 11 6 5.6165 -2.1909 0.0009 12 6 6.4787 -3.4583 0.1247 13 6 7.4244 -2.8208 -0.9069 14 7 8.4711 -1.9888 -0.3082 15 6 9.6135 -1.7536 -0.9834 16 8 9.7776 -2.2362 -2.0876 17 6 10.6620 -0.9132 -0.3848 18 6 11.7750 -0.7016 -1.0638 19 6 12.9000 0.1403 -0.5313 20 8 12.4496 0.9181 0.5794 21 6 11.7661 0.1406 1.5698 22 6 10.4322 -0.3287 0.9820 23 6 6.2121 -2.0188 -1.4094 24 1 -0.4851 0.8400 0.0004 25 1 3.8647 -0.3618 -0.0004 26 1 3.8487 -3.0431 -0.8882 27 1 3.8494 -3.0412 0.8918 28 1 5.9001 -1.4002 0.6955 29 1 5.9838 -4.3601 -0.2354 30 1 6.9288 -3.5856 1.1093 31 1 7.8133 -3.5287 -1.6388 32 1 8.3401 -1.6038 0.5725 33 1 11.8789 -1.1479 -2.0418 34 1 13.2599 0.8056 -1.3163 35 1 13.7119 -0.5122 -0.2101 36 1 11.5820 0.7523 2.4530 37 1 12.3725 -0.7242 1.8394 38 1 9.7511 0.5187 0.9046 39 1 9.9958 -1.0868 1.6323 40 1 6.4470 -0.9851 -1.6626 41 1 5.6443 -2.5280 -2.1882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282003639.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:51 Heat of formation + Delta-G solvation = -59.180397 kcal Electronic energy + Delta-G solvation = -21546.953725 eV Core-core repulsion = 18234.031739 eV Total energy + Delta-G solvation = -3312.921986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.58737 -40.29069 -39.24906 -36.51879 -35.05235 -34.24406 -33.14905 -31.99212 -29.00440 -27.17646 -26.66851 -25.18461 -24.55805 -23.10692 -22.62364 -20.51627 -19.59543 -19.47141 -18.60689 -17.44972 -16.99575 -16.68464 -16.36214 -16.33545 -16.01211 -15.80159 -15.52555 -15.07335 -14.81961 -14.61101 -14.44259 -13.97766 -13.69224 -13.51743 -13.45329 -13.34611 -13.02263 -12.75713 -12.53647 -12.18830 -11.91538 -11.86461 -11.71602 -11.44624 -11.24194 -11.20777 -10.92430 -10.60936 -10.27778 -10.00366 -9.29016 -8.04255 -5.37244 0.23367 1.35437 1.39893 1.46979 2.04094 2.13698 2.46976 2.92970 3.26987 3.44514 3.51930 3.56196 3.68005 3.83980 3.85204 3.90342 4.08899 4.25666 4.29057 4.43365 4.48314 4.53453 4.65805 4.70824 4.79766 4.82643 4.86545 4.87611 4.95463 4.96500 5.09387 5.21734 5.22819 5.31544 5.42920 5.62948 5.75188 6.10376 6.20371 6.46827 7.07320 7.12141 7.84578 8.03241 9.17575 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.003490 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.673535 B = 8020.483060 C = 8816.272561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.236 4.236 8 H 0.055 0.945 9 N -0.758 5.758 10 C 0.162 3.838 11 C -0.114 4.114 12 C -0.115 4.115 13 C 0.122 3.878 14 N -0.694 5.694 15 C 0.549 3.451 16 O -0.587 6.587 17 C -0.183 4.183 18 C -0.108 4.108 19 C 0.084 3.916 20 O -0.397 6.397 21 C 0.057 3.943 22 C -0.119 4.119 23 C -0.147 4.147 24 H 0.258 0.742 25 H 0.365 0.635 26 H 0.024 0.976 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.414 0.586 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.055 0.945 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.218 -2.469 4.055 30.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.367 4.367 8 H 0.073 0.927 9 N -0.404 5.404 10 C 0.036 3.964 11 C -0.133 4.133 12 C -0.153 4.153 13 C 0.016 3.984 14 N -0.345 5.345 15 C 0.339 3.661 16 O -0.469 6.469 17 C -0.186 4.186 18 C -0.128 4.128 19 C 0.009 3.991 20 O -0.316 6.316 21 C -0.019 4.019 22 C -0.156 4.156 23 C -0.185 4.185 24 H 0.067 0.933 25 H 0.198 0.802 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.252 0.748 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 30.142 -2.741 3.326 30.449 hybrid contribution -0.687 0.841 -0.107 1.092 sum 29.455 -1.900 3.218 29.691 Atomic orbital electron populations 1.69887 1.07190 1.26737 1.59809 1.25541 0.96152 1.01376 1.02686 0.85380 0.78746 0.79489 0.77988 1.20800 1.22051 1.17347 1.19077 0.82947 0.93460 1.41202 0.92654 1.42735 1.02372 1.04386 1.90907 1.20815 0.90275 0.87159 0.98113 1.22810 0.93369 0.99575 0.97541 1.23211 0.94964 0.97242 0.99921 1.21803 0.86581 0.93050 0.96940 1.45541 1.15931 1.51453 1.21526 1.18880 0.82661 0.80057 0.84550 1.90760 1.80812 1.53502 1.21775 1.20950 0.95480 1.02637 0.99522 1.23933 0.94612 0.94761 0.99481 1.21780 0.93204 0.94653 0.89499 1.88131 1.75658 1.35721 1.32059 1.22843 0.91017 0.96823 0.91260 1.21156 1.00534 1.01747 0.92185 1.23522 0.97009 1.00547 0.97450 0.93310 0.80176 0.95829 0.95483 0.88711 0.87572 0.88647 0.88964 0.74814 0.85711 0.85475 0.88687 0.86343 0.91155 0.89478 0.87663 0.92616 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.00 13.97 21.65 0.30 -63.70 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.96 45.86 27.74 68.60 1.90 47.77 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.60 6.52 99.48 0.65 -9.96 16 7 C -0.24 -13.66 10.47 84.03 0.88 -12.78 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.76 -35.47 5.41 -343.46 -1.86 -37.32 16 10 C 0.16 5.93 6.10 86.38 0.53 6.46 16 11 C -0.11 -3.01 3.65 -10.18 -0.04 -3.04 16 12 C -0.12 -2.22 7.38 31.12 0.23 -1.99 16 13 C 0.12 2.71 4.29 45.52 0.20 2.90 16 14 N -0.69 -13.72 5.21 -443.62 -2.31 -16.03 16 15 C 0.55 13.05 7.73 86.57 0.67 13.72 16 16 O -0.59 -18.70 15.68 -4.07 -0.06 -18.76 16 17 C -0.18 -3.29 5.86 -18.59 -0.11 -3.40 16 18 C -0.11 -1.78 9.58 24.58 0.24 -1.54 16 19 C 0.08 0.96 7.04 71.10 0.50 1.46 16 20 O -0.40 -5.92 10.83 -148.98 -1.61 -7.54 16 21 C 0.06 0.58 6.88 72.03 0.50 1.08 16 22 C -0.12 -1.42 5.29 29.80 0.16 -1.26 16 23 C -0.15 -3.92 7.45 31.22 0.23 -3.68 16 24 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.37 16.25 5.53 -92.70 -0.51 15.73 16 26 H 0.02 0.90 7.85 -2.39 -0.02 0.88 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 2.27 7.50 -2.39 -0.02 2.25 16 32 H 0.41 6.00 7.01 -92.71 -0.65 5.35 16 33 H 0.13 2.32 7.29 -2.91 -0.02 2.29 16 34 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.54 8.09 -2.38 -0.02 0.52 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 0.82 7.31 -2.39 -0.02 0.80 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 2.44 7.90 -2.39 -0.02 2.42 16 Total: -1.00 -77.04 334.87 0.62 -76.42 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.18 Total: 24.74 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 4.44 Total: -5.57 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -3.87 Total: -117.05 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -1.68 Total: -26.30 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.77 kcal Total: -77.04 0.62 -76.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282003639.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.242 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds