Wall clock time and date at job start Tue Mar 31 2020 02:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47145 * 2 1 4 4 C 1.50703 * 109.47484 * 119.99994 * 2 1 3 5 5 N 1.30016 * 127.33332 * 300.00234 * 4 2 1 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 2 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 13 21 21 H 1.48491 * 109.47115 * 89.99974 * 20 18 16 22 22 H 1.48509 * 109.46780 * 210.00159 * 20 18 16 23 23 H 1.48497 * 109.46888 * 329.99916 * 20 18 16 24 24 H 1.09005 * 109.47076 * 299.99956 * 1 2 3 25 25 H 1.08998 * 109.47305 * 59.99961 * 1 2 3 26 26 H 1.09005 * 109.47019 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47076 * 240.00044 * 2 1 3 28 28 H 1.08995 * 109.47109 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47051 * 300.00194 * 3 2 1 30 30 H 1.09005 * 109.47098 * 60.00057 * 3 2 1 31 31 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 33 33 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 34 34 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 35 35 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 36 36 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 37 37 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 38 38 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 39 39 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 41 41 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.8079 -0.3929 2.4711 6 8 2.3436 -1.1512 3.2418 7 6 3.0249 -2.1243 2.6329 8 6 2.8807 -1.9110 1.2836 9 6 3.4341 -2.6953 0.1650 10 8 3.2010 -2.3663 -0.9823 11 7 4.1987 -3.7770 0.4137 12 6 4.7437 -4.5600 -0.6980 13 6 5.5628 -5.7284 -0.1456 14 6 6.7112 -5.1874 0.7084 15 6 4.6641 -6.6199 0.7138 16 6 6.1240 -6.5335 -1.2893 17 1 5.9168 -6.2413 -2.3082 18 6 6.9019 -7.6430 -1.0348 19 7 7.1538 -7.9991 0.2060 20 14 7.5970 -8.6415 -2.4524 21 1 8.9278 -8.1029 -2.8315 22 1 7.7372 -10.0603 -2.0366 23 1 6.6783 -8.5551 -3.6159 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.5802 -2.9202 3.1067 32 1 4.3844 -4.0396 1.3289 33 1 3.9256 -4.9455 -1.3065 34 1 5.3840 -3.9250 -1.3103 35 1 6.3056 -4.6048 1.5356 36 1 7.2944 -6.0198 1.1023 37 1 7.3513 -4.5522 0.0962 38 1 3.8460 -7.0053 0.1053 39 1 5.2477 -7.4520 1.1076 40 1 4.2586 -6.0373 1.5409 41 1 7.7013 -8.7795 0.3850 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600000921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:13 Heat of formation + Delta-G solvation = 2.016197 kcal Electronic energy + Delta-G solvation = -22209.220275 eV Core-core repulsion = 18898.951973 eV Total energy + Delta-G solvation = -3310.268302 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.93782 -39.28521 -36.65060 -36.10322 -33.56989 -32.52673 -31.68571 -30.75117 -27.28042 -26.17379 -25.80381 -25.31250 -23.76740 -23.64211 -20.58497 -19.96326 -18.92493 -18.10829 -17.70423 -16.57453 -15.85233 -15.39526 -14.91556 -14.75913 -14.71688 -14.43117 -13.73703 -13.40934 -13.27508 -12.92159 -12.88003 -12.34854 -12.28423 -11.83757 -11.47906 -11.44033 -11.42329 -11.26141 -10.92382 -10.88115 -10.73714 -10.46577 -10.25907 -9.97013 -9.78766 -9.76687 -9.71163 -9.37952 -8.86261 -8.56124 -8.39933 -6.07441 -4.17635 1.07723 1.77975 2.92464 3.25375 3.32669 3.36062 3.44532 3.55403 3.99394 4.20919 4.36317 4.82178 4.96059 5.01945 5.07474 5.19725 5.20121 5.40913 5.50178 5.66074 5.68939 5.82159 5.94659 6.09542 6.13694 6.23854 6.29160 6.42163 6.67178 6.73049 6.84255 6.88854 6.94065 7.27449 7.48243 7.63771 7.87799 7.94020 8.07053 8.15865 8.31466 8.51170 8.82828 9.48632 10.94040 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.031907 B = 0.003725 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.328954 B = 7514.315752 C = 8024.652532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 C -0.141 4.141 4 C 0.076 3.924 5 N -0.359 5.359 6 O 0.094 5.906 7 C -0.013 4.013 8 C -0.244 4.244 9 C 0.583 3.417 10 O -0.539 6.539 11 N -0.707 5.707 12 C 0.132 3.868 13 C 0.055 3.945 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.226 0.774 32 H 0.396 0.604 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.005 0.995 36 H 0.086 0.914 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 11.740 5.300 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 C -0.199 4.199 4 C -0.087 4.087 5 N -0.065 5.065 6 O 0.034 5.966 7 C -0.095 4.095 8 C -0.251 4.251 9 C 0.369 3.631 10 O -0.418 6.418 11 N -0.357 5.357 12 C 0.010 3.990 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.134 4.134 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.132 0.868 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.242 0.758 32 H 0.232 0.768 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.984 12.756 5.195 16.444 hybrid contribution 0.991 -1.395 -0.697 1.848 sum -7.992 11.361 4.498 14.601 Atomic orbital electron populations 1.21805 0.93578 1.02269 1.02244 1.19817 0.96103 0.95672 0.92992 1.21804 1.01395 0.94455 1.02243 1.24811 0.96438 0.93775 0.93705 1.73587 1.16975 1.14037 1.01931 1.84560 1.48653 1.29451 1.33908 1.26441 0.96524 0.94297 0.92219 1.22577 1.07364 1.00857 0.94348 1.16894 0.78906 0.80457 0.86885 1.90737 1.60141 1.69474 1.21451 1.46178 1.50385 1.27464 1.11695 1.21807 0.97001 0.92886 0.87287 1.18378 0.91436 0.89941 0.94785 1.21840 0.99813 1.00213 0.97012 1.21839 0.98584 1.01447 0.97003 1.20964 1.31088 1.10399 0.92087 0.92370 1.24872 0.95874 0.97070 0.95626 1.69791 1.38433 1.26242 1.17954 0.86566 0.79447 0.79273 0.82569 1.20689 1.21248 1.19872 0.92383 0.91594 0.92441 0.86756 0.92441 0.91598 0.92382 0.75809 0.76847 0.92343 0.92337 0.97625 0.89492 0.95339 0.95333 0.89495 0.97624 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 2 C -0.03 -0.34 3.33 -91.77 -0.31 -0.64 16 3 C -0.14 -1.53 9.18 37.16 0.34 -1.18 16 4 C 0.08 1.05 6.09 -79.77 -0.49 0.57 16 5 N -0.36 -4.86 12.01 34.78 0.42 -4.44 16 6 O 0.09 1.12 11.06 18.64 0.21 1.33 16 7 C -0.01 -0.14 11.85 30.41 0.36 0.23 16 8 C -0.24 -3.45 6.47 -102.89 -0.67 -4.11 16 9 C 0.58 9.92 7.81 -12.53 -0.10 9.82 16 10 O -0.54 -10.78 15.25 5.27 0.08 -10.70 16 11 N -0.71 -11.83 4.95 -61.39 -0.30 -12.13 16 12 C 0.13 2.66 4.50 -4.04 -0.02 2.65 16 13 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 14 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 15 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 16 C -0.51 -12.84 8.01 -34.44 -0.28 -13.11 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.89 -22.90 9.35 55.43 0.52 -22.38 16 20 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.11 1.65 6.29 -51.93 -0.33 1.33 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.23 1.50 7.68 -52.49 -0.40 1.09 16 32 H 0.40 5.73 5.35 -40.82 -0.22 5.51 16 33 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 36 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 40 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 41 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -28.29 334.38 -5.50 -33.79 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.06 Total: 3.49 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.38 Total: -9.22 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.63 Total: -38.95 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.29 Total: -9.37 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.29 -5.50 -33.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.802 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds