Wall clock time and date at job start Tue Mar 31 2020 02:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 C 1.34182 * 126.11036 * 275.00399 * 4 2 1 6 6 O 1.35023 * 107.25127 * 180.02562 * 5 4 2 7 7 C 1.34199 * 107.73983 * 359.97438 * 6 5 4 8 8 N 1.38658 * 125.69221 * 180.02562 * 7 6 5 9 9 C 1.34771 * 120.00401 * 0.02562 * 8 7 6 10 10 O 1.21279 * 119.99909 * 0.02562 * 9 8 7 11 11 C 1.50699 * 119.99813 * 179.97438 * 9 8 7 12 12 C 1.53008 * 109.46980 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47066 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46882 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47009 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99670 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00177 * 179.97438 * 15 14 13 18 18 N 1.31501 * 120.00310 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99833 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47095 * 90.00015 * 19 17 15 21 21 H 1.48494 * 109.47359 * 210.00020 * 19 17 15 22 22 H 1.48501 * 109.47083 * 330.00183 * 19 17 15 23 23 N 1.30951 * 108.60455 * 359.73203 * 7 6 5 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.07994 * 126.37395 * 0.02562 * 5 4 2 32 32 H 0.97001 * 119.99410 * 180.02562 * 8 7 6 33 33 H 1.08993 * 109.47443 * 300.00290 * 11 9 8 34 34 H 1.08996 * 109.47001 * 60.00997 * 11 9 8 35 35 H 1.09001 * 109.46845 * 300.00411 * 12 11 9 36 36 H 1.09001 * 109.46890 * 59.99852 * 12 11 9 37 37 H 1.08997 * 109.46539 * 299.99887 * 13 12 11 38 38 H 1.08991 * 109.47069 * 60.00111 * 13 12 11 39 39 H 1.09001 * 109.46748 * 299.99752 * 14 13 12 40 40 H 1.09001 * 109.47171 * 59.99306 * 14 13 12 41 41 H 0.97008 * 120.00549 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2069 -0.1637 2.4433 6 8 2.6693 -1.1361 3.2580 7 6 2.7707 -2.2619 2.5346 8 7 3.2090 -3.4899 3.0062 9 6 3.5781 -3.6240 4.2954 10 8 3.5264 -2.6706 5.0433 11 6 4.0539 -4.9588 4.8080 12 6 4.4075 -4.8387 6.2918 13 6 4.8913 -6.1938 6.8121 14 6 5.2442 -6.0739 8.2960 15 6 5.7213 -7.4084 8.8083 16 1 5.7676 -8.2573 8.1422 17 6 6.0986 -7.5457 10.1274 18 7 6.5144 -8.7103 10.5746 19 14 6.0191 -6.0772 11.2792 20 1 4.6829 -6.0267 11.9253 21 1 7.0684 -6.2084 12.3217 22 1 6.2426 -4.8291 10.5062 23 7 2.3805 -2.0084 1.3105 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 2.0135 0.8629 2.7170 32 1 3.2500 -4.2525 2.4081 33 1 3.2640 -5.6991 4.6819 34 1 4.9359 -5.2696 4.2481 35 1 5.1974 -4.0983 6.4183 36 1 3.5253 -4.5280 6.8515 37 1 4.1016 -6.9344 6.6855 38 1 5.7735 -6.5040 6.2523 39 1 6.0337 -5.3331 8.4229 40 1 4.3617 -5.7637 8.8555 41 1 6.7795 -8.8070 11.5027 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602391663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:17 Heat of formation + Delta-G solvation = -62.254441 kcal Electronic energy + Delta-G solvation = -20766.721042 eV Core-core repulsion = 17453.665756 eV Total energy + Delta-G solvation = -3313.055286 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -44.44153 -41.16306 -37.39044 -36.82762 -36.41594 -34.64283 -34.51502 -32.03467 -29.84234 -28.07193 -27.69184 -24.94524 -24.37605 -23.09608 -22.26665 -21.64390 -20.48374 -19.16895 -18.83492 -18.12184 -18.05667 -17.43976 -16.91999 -16.33737 -15.95901 -15.66641 -15.46798 -15.06696 -14.72978 -14.54344 -14.03333 -13.96754 -13.75633 -13.55433 -13.02592 -12.91533 -12.75875 -12.42362 -12.37597 -12.21262 -12.10379 -11.99883 -11.75918 -11.62976 -11.56056 -11.46022 -11.34317 -11.28324 -11.18034 -10.75445 -9.34258 -8.28996 -6.31801 0.27539 0.90932 1.18933 1.34968 1.36612 1.48928 1.79562 2.05961 2.36052 3.06559 3.25814 3.65876 3.78674 3.94558 4.13344 4.14393 4.23764 4.30208 4.41902 4.56855 4.63737 4.71691 4.74808 4.81289 4.83003 4.90147 5.00541 5.07632 5.12510 5.13652 5.20132 5.24654 5.30219 5.38400 5.42018 5.61958 5.67113 5.69674 5.79599 6.30420 6.67143 6.76670 6.83107 7.32987 8.87423 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.051823 B = 0.002348 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.173832 B =11923.267959 C =12281.423047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.013 4.013 3 C -0.144 4.144 4 C 0.003 3.997 5 C -0.092 4.092 6 O -0.210 6.210 7 C 0.404 3.596 8 N -0.604 5.604 9 C 0.517 3.483 10 O -0.540 6.540 11 C -0.120 4.120 12 C -0.101 4.101 13 C -0.094 4.094 14 C -0.019 4.019 15 C -0.529 4.529 16 H 0.038 0.962 17 C 0.002 3.998 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.252 1.252 23 N -0.515 5.515 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.454 0.546 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.014 0.986 40 H 0.013 0.987 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 19.657 -24.680 33.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.116 4.116 5 C -0.162 4.162 6 O -0.095 6.095 7 C 0.108 3.892 8 N -0.265 5.265 9 C 0.306 3.694 10 O -0.413 6.413 11 C -0.159 4.159 12 C -0.140 4.140 13 C -0.131 4.131 14 C -0.056 4.056 15 C -0.567 4.567 16 H 0.057 0.943 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.175 1.175 23 N -0.254 5.254 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.262 0.738 32 H 0.299 0.701 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.595 19.769 -24.346 33.436 hybrid contribution 0.280 0.139 1.281 1.318 sum -11.315 19.907 -23.066 32.502 Atomic orbital electron populations 1.21816 0.92862 1.01778 1.03242 1.19594 0.96375 0.95545 0.91653 1.21883 1.01136 0.93385 1.03775 1.22059 1.03025 0.88922 0.97642 1.25314 1.06618 0.94974 0.89289 1.84683 1.65813 1.18185 1.40806 1.21932 0.98526 0.83979 0.84801 1.42760 1.64057 1.06829 1.12876 1.21944 0.75100 0.92621 0.79705 1.90806 1.51919 1.42426 1.56164 1.21749 1.05643 0.91463 0.97080 1.21349 1.01168 0.97451 0.94002 1.21331 1.00665 0.95898 0.95251 1.19594 0.95825 0.94828 0.95390 1.21556 1.42908 0.96595 0.95636 0.94324 1.25998 0.94482 0.98678 1.00285 1.70056 1.46607 1.25907 1.16571 0.85705 0.78327 0.80435 0.78469 1.19305 1.20904 1.17536 1.70628 1.21649 1.17579 1.15521 0.92125 0.93787 0.89885 0.89772 0.91303 0.92827 0.89906 0.73794 0.70123 0.84835 0.84844 0.92683 0.92607 0.92035 0.92049 0.96792 0.96886 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.18 71.98 0.66 -0.81 16 2 C -0.01 -0.16 3.37 -11.54 -0.04 -0.20 16 3 C -0.14 -1.16 8.77 71.98 0.63 -0.53 16 4 C 0.00 0.06 6.03 41.20 0.25 0.31 16 5 C -0.09 -1.80 11.32 66.89 0.76 -1.04 16 6 O -0.21 -5.79 9.09 12.19 0.11 -5.68 16 7 C 0.40 10.12 8.88 178.94 1.59 11.71 16 8 N -0.60 -11.85 5.39 -423.79 -2.28 -14.14 16 9 C 0.52 12.35 7.79 87.66 0.68 13.03 16 10 O -0.54 -18.21 14.74 17.87 0.26 -17.94 16 11 C -0.12 -2.30 5.70 29.85 0.17 -2.13 16 12 C -0.10 -2.98 4.50 30.60 0.14 -2.84 16 13 C -0.09 -3.36 5.15 30.60 0.16 -3.20 16 14 C -0.02 -0.89 4.04 29.85 0.12 -0.77 16 15 C -0.53 -30.61 9.66 25.60 0.25 -30.36 16 16 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 17 C 0.00 0.13 5.47 84.66 0.46 0.59 16 18 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 19 Si 0.95 45.54 27.47 68.60 1.88 47.43 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 23 N -0.52 -12.21 11.33 -301.68 -3.42 -15.63 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 0.42 7.28 -2.39 -0.02 0.40 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.25 2.72 7.37 -2.91 -0.02 2.70 16 32 H 0.45 5.26 8.82 -92.71 -0.82 4.44 16 33 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.74 8.10 -2.39 -0.02 1.73 16 36 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 40 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 41 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -78.95 344.76 2.83 -76.12 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 0.15 Total: 5.92 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.83 Total: -16.24 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -5.40 Total: -89.60 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.37 Total: -23.63 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.43 kcal Total: -78.95 2.83 -76.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602391663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.864 kcal (2) G-P(sol) polarization free energy of solvation -78.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds