Wall clock time and date at job start Tue Mar 31 2020 01:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47199 * 109.51597 * 2 1 4 4 N 2.60802 * 109.51353 * 359.97438 * 2 1 3 5 5 C 1.52878 * 109.58074 * 239.97808 * 2 1 3 6 6 N 1.47152 * 108.60719 * 187.92288 * 5 2 1 7 7 C 1.34784 * 120.98278 * 230.50279 * 6 5 2 8 8 O 1.21283 * 119.99649 * 359.71768 * 7 6 5 9 9 C 1.50697 * 119.99774 * 179.44664 * 7 6 5 10 10 C 1.53003 * 109.46624 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46813 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47327 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99521 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00024 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99884 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47172 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47241 * 120.00108 * 17 15 13 20 20 H 1.48501 * 109.47173 * 240.00025 * 17 15 13 21 21 C 1.47159 * 118.03648 * 50.23000 * 6 5 2 22 22 C 1.53296 * 108.38013 * 309.71446 * 21 6 5 23 23 O 1.42959 * 109.22335 * 52.30255 * 22 21 6 24 24 H 1.09007 * 109.46402 * 299.90166 * 1 2 3 25 25 H 1.08997 * 109.46996 * 59.89894 * 1 2 3 26 26 H 1.09000 * 109.47471 * 179.90464 * 1 2 3 27 27 H 1.09004 * 109.61943 * 68.10529 * 5 2 1 28 28 H 1.08998 * 109.52652 * 307.69013 * 5 2 1 29 29 H 1.09001 * 109.46809 * 299.99238 * 9 7 6 30 30 H 1.08993 * 109.47525 * 59.99679 * 9 7 6 31 31 H 1.09001 * 109.46782 * 299.99104 * 10 9 7 32 32 H 1.08993 * 109.47555 * 59.99547 * 10 9 7 33 33 H 1.08998 * 109.47446 * 299.99771 * 11 10 9 34 34 H 1.09001 * 109.47095 * 59.99865 * 11 10 9 35 35 H 1.08998 * 109.47065 * 300.00400 * 12 11 10 36 36 H 1.09006 * 109.46890 * 59.99659 * 12 11 10 37 37 H 0.97000 * 119.99626 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.67882 * 69.43880 * 21 6 5 39 39 H 1.09001 * 109.68143 * 189.99132 * 21 6 5 40 40 H 1.09002 * 109.50466 * 172.22804 * 22 21 6 41 41 H 1.08994 * 109.51326 * 292.32268 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0217 1.3874 0.0000 4 7 2.4011 2.4582 -0.0011 5 6 2.0423 -0.7207 -1.2471 6 7 3.5011 -0.8768 -1.1332 7 6 4.3193 -0.5045 -2.1374 8 8 3.8554 -0.0375 -3.1561 9 6 5.8109 -0.6628 -1.9921 10 6 6.5025 -0.1682 -3.2641 11 6 8.0169 -0.3283 -3.1163 12 6 8.7086 0.1657 -4.3885 13 6 10.2003 0.0086 -4.2427 14 1 10.6136 -0.4029 -3.3338 15 6 11.0373 0.3902 -5.2697 16 7 10.5339 0.8918 -6.3764 17 14 12.8862 0.1948 -5.0893 18 1 13.1948 -0.3896 -3.7595 19 1 13.3952 -0.7054 -6.1551 20 1 13.5386 1.5233 -5.2102 21 6 4.0406 -1.4459 0.1121 22 6 3.4312 -0.6849 1.2951 23 8 2.0075 -0.6758 1.1658 24 1 -0.3632 0.5124 0.8910 25 1 -0.3633 0.5154 -0.8891 26 1 -0.3634 -1.0276 -0.0017 27 1 1.8043 -0.1325 -2.1335 28 1 1.5727 -1.7016 -1.3198 29 1 6.1570 -0.0779 -1.1399 30 1 6.0509 -1.7140 -1.8328 31 1 6.1565 -0.7527 -4.1165 32 1 6.2624 0.8831 -3.4229 33 1 8.3627 0.2564 -2.2639 34 1 8.2573 -1.3795 -2.9573 35 1 8.3628 -0.4193 -5.2406 36 1 8.4682 1.2169 -4.5479 37 1 11.1228 1.1606 -7.0988 38 1 3.7756 -2.5010 0.1785 39 1 5.1252 -1.3377 0.1254 40 1 3.7092 -1.1776 2.2268 41 1 3.8037 0.3394 1.2998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887686829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:03 Heat of formation + Delta-G solvation = -65.166388 kcal Electronic energy + Delta-G solvation = -21653.535464 eV Core-core repulsion = 18340.353907 eV Total energy + Delta-G solvation = -3313.181558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.05971 -39.09112 -36.55334 -35.21036 -34.97395 -33.77120 -32.60579 -29.95990 -29.32329 -27.33218 -25.32066 -24.19744 -23.46916 -22.13255 -20.07308 -19.42835 -18.49862 -17.39292 -16.89281 -16.19372 -16.14337 -15.81066 -15.49337 -14.72474 -14.55572 -14.43553 -14.01466 -13.94204 -13.59984 -13.01587 -12.93587 -12.83467 -12.74715 -12.46450 -12.28214 -12.17789 -12.10660 -11.66329 -11.58748 -11.33479 -11.01084 -10.88825 -10.57415 -10.49358 -10.42975 -9.89661 -9.63383 -9.24636 -8.98862 -8.97764 -8.31192 -5.95721 -3.98300 2.10640 2.32958 2.53148 2.58065 3.12778 3.28674 3.32814 3.39976 3.43785 3.97858 4.25797 4.40191 4.47757 4.53360 4.60020 4.77510 4.97456 5.01740 5.12556 5.15231 5.22222 5.26585 5.29120 5.33256 5.39740 5.53124 5.76227 5.99830 6.09439 6.26279 6.34356 6.51163 6.80828 6.96149 7.05837 7.08754 7.19246 7.73646 7.89036 8.02641 8.05760 8.47177 9.09592 9.65456 11.15670 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035676 B = 0.002839 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.657358 B = 9860.482868 C =10036.507614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.206 3.794 3 C 0.177 3.823 4 N -0.397 5.397 5 C 0.093 3.907 6 N -0.629 5.629 7 C 0.518 3.482 8 O -0.526 6.526 9 C -0.137 4.137 10 C -0.104 4.104 11 C -0.109 4.109 12 C 0.019 3.981 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.072 3.928 22 C 0.038 3.962 23 O -0.351 6.351 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.176 -7.621 17.375 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.162 3.838 3 C -0.143 4.143 4 N -0.074 5.074 5 C -0.031 4.031 6 N -0.365 5.365 7 C 0.308 3.692 8 O -0.401 6.401 9 C -0.177 4.177 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.018 4.018 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.051 4.051 22 C -0.039 4.039 23 O -0.268 6.268 24 H 0.097 0.903 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.900 -5.790 16.772 27.416 hybrid contribution 1.183 -0.340 -0.014 1.231 sum -19.717 -6.130 16.758 26.593 Atomic orbital electron populations 1.21799 0.88305 1.05040 1.04351 1.19357 0.96300 0.79930 0.88228 1.29788 0.94352 0.95623 0.94533 1.81221 1.07274 1.12553 1.06323 1.22169 0.81372 1.02126 0.97471 1.48289 1.06112 1.64873 1.17268 1.21206 0.89770 0.76117 0.82124 1.90713 1.77497 1.43400 1.28482 1.21837 0.89657 1.03681 1.02528 1.21479 0.96357 1.01722 0.94651 1.21646 0.91812 1.00182 1.01077 1.19100 0.94541 0.96495 0.91623 1.21311 0.91919 1.41385 1.01186 0.92701 1.25049 0.98783 0.95387 0.95396 1.69990 1.34857 1.42982 1.05619 0.86552 0.85792 0.77723 0.78021 1.19777 1.21034 1.21048 1.22486 1.00703 0.98583 0.83313 1.23180 0.80448 1.00936 0.99317 1.88137 1.21834 1.74762 1.42031 0.90334 0.89603 0.89166 0.87220 0.88412 0.89182 0.88819 0.91654 0.91836 0.93505 0.93403 0.96558 0.96614 0.93087 0.89586 0.87800 0.86295 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 8.80 37.16 0.33 -0.27 16 2 C 0.21 1.54 1.05 -93.47 -0.10 1.45 16 3 C 0.18 1.96 12.35 -20.76 -0.26 1.71 16 4 N -0.40 -5.61 18.54 42.15 0.78 -4.83 16 5 C 0.09 0.76 5.25 -3.75 -0.02 0.74 16 6 N -0.63 -6.26 2.77 -172.52 -0.48 -6.74 16 7 C 0.52 7.17 7.71 -10.98 -0.08 7.08 16 8 O -0.53 -9.43 15.45 5.56 0.09 -9.34 16 9 C -0.14 -1.81 4.07 -27.88 -0.11 -1.92 16 10 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 17 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C 0.07 0.47 6.54 -3.53 -0.02 0.45 16 22 C 0.04 0.24 6.69 37.31 0.25 0.49 16 23 O -0.35 -2.55 10.21 -35.23 -0.36 -2.91 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.11 1.08 7.06 -51.93 -0.37 0.71 16 28 H 0.10 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.09 1.05 7.67 -51.93 -0.40 0.65 16 30 H 0.09 1.02 8.00 -51.93 -0.42 0.60 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.59 6.05 -51.93 -0.31 0.28 16 40 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.47 7.02 -51.93 -0.36 0.11 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -36.45 342.26 -6.39 -42.84 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -6.47 Total: -6.07 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.83 Total: -8.13 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 1.04 Total: -38.52 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.27 Total: -12.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.45 -6.39 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887686829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.324 kcal (2) G-P(sol) polarization free energy of solvation -36.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds