Wall clock time and date at job start Tue Mar 31 2020 01:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 110.64057 * 2 1 4 4 C 1.34782 * 119.99506 * 56.85773 * 3 2 1 5 5 O 1.21274 * 120.00170 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99588 * 180.02562 * 4 3 2 7 7 C 1.52998 * 119.80634 * 250.23075 * 6 4 3 8 8 C 1.52992 * 60.57804 * 247.65983 * 7 6 4 9 9 H 1.09004 * 119.80750 * 113.35656 * 8 7 6 10 10 C 1.54474 * 118.06967 * 269.61687 * 8 7 6 11 11 O 1.44433 * 104.80140 * 86.82773 * 10 8 7 12 12 C 1.44418 * 105.27425 * 319.49111 * 11 10 8 13 13 C 1.55155 * 110.72251 * 236.86343 * 2 1 3 14 14 C 1.54907 * 101.58185 * 205.95423 * 13 2 1 15 15 N 1.47427 * 104.83345 * 37.00803 * 14 13 2 16 16 C 1.36940 * 125.65032 * 155.91650 * 15 14 13 17 17 H 1.07992 * 119.99708 * 342.08505 * 16 15 14 18 18 C 1.38805 * 119.99812 * 162.08155 * 16 15 14 19 19 N 1.31624 * 120.00072 * 156.22103 * 18 16 15 20 20 Si 1.86805 * 120.00447 * 336.22503 * 18 16 15 21 21 H 1.48496 * 109.47078 * 84.66488 * 20 18 16 22 22 H 1.48499 * 109.47146 * 204.66875 * 20 18 16 23 23 H 1.48496 * 109.46811 * 324.67109 * 20 18 16 24 24 C 1.47023 * 108.70049 * 335.87099 * 15 14 13 25 25 H 1.08999 * 109.47166 * 60.70351 * 1 2 3 26 26 H 1.09006 * 109.46620 * 180.69809 * 1 2 3 27 27 H 1.08999 * 109.47258 * 300.69612 * 1 2 3 28 28 H 0.97001 * 120.00122 * 236.86178 * 3 2 1 29 29 H 1.09005 * 117.43394 * 140.00861 * 7 6 4 30 30 H 1.08997 * 117.43397 * 355.31462 * 7 6 4 31 31 H 1.09000 * 110.37839 * 205.65794 * 10 8 7 32 32 H 1.09003 * 110.37545 * 327.88620 * 10 8 7 33 33 H 1.08992 * 110.37191 * 159.34672 * 12 11 10 34 34 H 1.09007 * 110.37331 * 281.68289 * 12 11 10 35 35 H 1.09002 * 111.00501 * 324.02821 * 13 2 1 36 36 H 1.09001 * 111.00653 * 87.83978 * 13 2 1 37 37 H 1.09006 * 110.37024 * 155.84431 * 14 13 2 38 38 H 1.09000 * 110.37026 * 278.05898 * 14 13 2 39 39 H 0.96993 * 120.00388 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.88087 * 241.64260 * 24 15 14 41 41 H 1.09000 * 109.88309 * 120.47683 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.6867 2.2265 0.9774 5 8 0.9353 1.8616 1.8565 6 6 2.2175 3.6370 0.9771 7 6 3.2349 4.0669 2.0358 8 6 1.8277 4.6669 2.0584 9 1 1.1548 4.4391 2.8850 10 6 1.5796 5.9682 1.2639 11 8 1.2559 5.5282 -0.0732 12 6 2.1605 4.4354 -0.3435 13 6 2.0790 -0.7933 -1.2152 14 6 3.4652 -1.2445 -0.6914 15 7 3.2495 -1.5469 0.7353 16 6 4.0127 -2.3916 1.4964 17 1 4.6587 -3.1135 1.0190 18 6 3.9561 -2.3199 2.8814 19 7 4.2832 -3.3671 3.6086 20 14 3.4155 -0.7372 3.7136 21 1 1.9329 -0.6974 3.7860 22 1 3.9799 -0.6818 5.0860 23 1 3.9041 0.4258 2.9300 24 6 2.0799 -0.7905 1.2059 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3633 -1.0277 0.0125 27 1 -0.3634 0.5246 0.8837 28 1 2.6471 1.6630 -0.7034 29 1 4.0515 4.7135 1.7143 30 1 3.4858 3.3455 2.8133 31 1 0.7448 6.5219 1.6936 32 1 2.4785 6.5847 1.2550 33 1 1.7721 3.8116 -1.1485 34 1 3.1492 4.8158 -0.6005 35 1 1.4470 -1.6528 -1.4385 36 1 2.1814 -0.1490 -2.0884 37 1 3.7994 -2.1362 -1.2219 38 1 4.1935 -0.4414 -0.8047 39 1 4.2433 -3.3172 4.5764 40 1 2.3775 -0.1015 1.9963 41 1 1.3191 -1.4773 1.5769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046323741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:21 Heat of formation + Delta-G solvation = -6.904234 kcal Electronic energy + Delta-G solvation = -23417.157563 eV Core-core repulsion = 20106.502442 eV Total energy + Delta-G solvation = -3310.655121 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.03999 -39.48509 -37.43315 -34.80008 -34.08780 -32.14674 -30.67737 -29.11675 -28.84274 -26.04234 -25.63794 -24.10126 -23.36844 -21.39611 -20.58670 -19.88309 -19.29756 -17.67577 -16.88065 -16.29456 -16.06093 -15.67615 -15.07142 -14.69425 -14.61709 -14.24165 -13.97550 -13.44425 -13.30355 -13.05416 -12.85908 -12.76505 -12.35392 -12.18770 -11.97883 -11.54027 -11.47437 -11.31486 -11.13200 -10.89191 -10.85365 -10.51907 -10.45188 -10.36635 -9.97845 -9.88240 -9.47200 -9.27653 -8.78178 -8.57658 -7.04259 -5.93808 -3.22226 2.57341 3.09427 3.35599 3.45076 3.54329 3.56243 3.72450 4.15903 4.27384 4.56941 4.59623 4.72705 4.76297 4.88615 4.96050 5.04293 5.24120 5.27309 5.34187 5.36926 5.42963 5.44183 5.48825 5.69239 5.80467 5.85247 5.89678 5.96153 6.00907 6.16980 6.32780 6.37889 6.46945 6.52390 6.69764 6.72914 6.93925 7.66754 7.73378 8.31918 8.39639 8.84622 9.71112 10.19314 11.22252 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.006481 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.162576 B = 4319.011810 C = 5052.608515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 N -0.707 5.707 4 C 0.561 3.439 5 O -0.528 6.528 6 C -0.209 4.209 7 C -0.110 4.110 8 C -0.159 4.159 9 H 0.132 0.868 10 C 0.073 3.927 11 O -0.369 6.369 12 C 0.088 3.912 13 C -0.132 4.132 14 C 0.132 3.868 15 N -0.610 5.610 16 C -0.244 4.244 17 H 0.093 0.907 18 C 0.024 3.976 19 N -0.906 5.906 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.306 1.306 23 H -0.285 1.285 24 C 0.118 3.882 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.397 0.603 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.042 0.958 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 17.102 -9.694 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.073 3.927 3 N -0.358 5.358 4 C 0.347 3.653 5 O -0.404 6.404 6 C -0.212 4.212 7 C -0.147 4.147 8 C -0.178 4.178 9 H 0.150 0.850 10 C -0.003 4.003 11 O -0.287 6.287 12 C 0.011 3.989 13 C -0.171 4.171 14 C 0.006 3.994 15 N -0.337 5.337 16 C -0.370 4.370 17 H 0.111 0.889 18 C -0.175 4.175 19 N -0.550 5.550 20 Si 0.720 3.280 21 H -0.209 1.209 22 H -0.235 1.235 23 H -0.212 1.212 24 C -0.007 4.007 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.232 0.768 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.966 16.756 -9.004 19.659 hybrid contribution 0.280 0.837 0.502 1.015 sum -4.686 17.592 -8.501 20.093 Atomic orbital electron populations 1.22077 0.93501 1.02711 1.02889 1.21360 0.93775 0.80323 0.97201 1.45884 1.49743 1.11874 1.28258 1.18930 0.80314 0.84577 0.81523 1.90689 1.35632 1.77610 1.36463 1.23312 1.09216 0.94702 0.94008 1.23194 0.91923 1.01456 0.98124 1.24279 1.00118 0.92893 1.00496 0.85007 1.22973 1.01501 0.93975 0.81862 1.89190 1.58256 1.49789 1.31506 1.22803 0.94504 0.87410 0.94198 1.23088 0.98875 0.99640 0.95488 1.21616 0.93320 0.97954 0.86502 1.44793 1.29794 1.52467 1.06623 1.18629 1.21083 1.09393 0.87937 0.88918 1.24929 0.99428 0.97220 0.95927 1.69859 1.52061 1.27489 1.05560 0.86906 0.78287 0.85528 0.77292 1.20878 1.23477 1.21182 1.22026 0.90367 0.93932 0.94392 0.92820 0.91419 0.90333 0.76831 0.87531 0.87131 0.88174 0.91537 0.88318 0.90993 0.89518 0.90977 0.93038 0.96035 0.92739 0.94119 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 8.38 37.16 0.31 -2.14 16 2 C 0.16 2.78 0.81 -129.98 -0.10 2.68 16 3 N -0.71 -11.06 5.02 -45.91 -0.23 -11.29 16 4 C 0.56 9.61 6.66 -10.98 -0.07 9.54 16 5 O -0.53 -11.10 13.84 5.56 0.08 -11.02 16 6 C -0.21 -2.76 2.83 -154.22 -0.44 -3.20 16 7 C -0.11 -1.32 9.88 -26.74 -0.26 -1.58 16 8 C -0.16 -1.89 6.89 -89.15 -0.61 -2.50 16 9 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 10 C 0.07 0.71 7.44 37.93 0.28 0.99 16 11 O -0.37 -4.39 11.65 -35.23 -0.41 -4.80 16 12 C 0.09 0.92 7.07 37.90 0.27 1.19 16 13 C -0.13 -1.98 6.07 -24.58 -0.15 -2.13 16 14 C 0.13 2.49 7.21 -2.53 -0.02 2.47 16 15 N -0.61 -14.99 3.21 -170.07 -0.55 -15.54 16 16 C -0.24 -7.06 10.56 -15.06 -0.16 -7.22 16 17 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 18 C 0.02 0.72 5.43 -17.43 -0.09 0.62 16 19 N -0.91 -28.68 13.97 55.49 0.78 -27.91 16 20 Si 0.89 24.55 24.39 -169.99 -4.15 20.40 16 21 H -0.28 -7.94 6.84 56.52 0.39 -7.55 16 22 H -0.31 -8.47 7.11 56.52 0.40 -8.07 16 23 H -0.28 -7.77 6.87 56.52 0.39 -7.38 16 24 C 0.12 2.76 4.11 -3.07 -0.01 2.75 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 27 H 0.08 1.44 6.03 -51.93 -0.31 1.12 16 28 H 0.40 4.92 8.20 -40.82 -0.33 4.59 16 29 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.95 7.80 -51.93 -0.41 0.54 16 34 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 36 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 40 H 0.04 1.06 2.29 -51.93 -0.12 0.94 16 41 H 0.05 1.15 7.81 -51.93 -0.41 0.75 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -35.76 322.27 -6.92 -42.68 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.23 Total: 1.16 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.06 Total: 1.46 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.00 Total: -54.74 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.33 Total: -15.82 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.15 Total: 20.40 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.76 -6.92 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046323741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.775 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds