Wall clock time and date at job start Tue Mar 31 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47189 * 7.87777 * 3 2 1 5 5 C 1.53007 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.50708 * 109.46863 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00044 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99609 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99860 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46236 * 324.97423 * 9 8 6 11 11 C 1.53040 * 109.45931 * 84.93467 * 9 8 6 12 12 C 1.53194 * 109.31287 * 181.38450 * 11 9 8 13 13 N 1.46931 * 108.77631 * 305.36729 * 12 11 9 14 14 C 1.36937 * 120.62784 * 233.61082 * 13 12 11 15 15 H 1.07995 * 120.00275 * 27.67202 * 14 13 12 16 16 C 1.38817 * 119.99667 * 207.67910 * 14 13 12 17 17 N 1.31619 * 120.00022 * 17.35916 * 16 14 13 18 18 Si 1.86794 * 119.99665 * 197.36986 * 16 14 13 19 19 H 1.48506 * 109.47537 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47569 * 119.99637 * 18 16 14 21 21 H 1.48503 * 109.46894 * 239.99438 * 18 16 14 22 22 C 1.46927 * 118.73891 * 53.60563 * 13 12 11 23 23 C 1.53044 * 109.46007 * 205.00364 * 9 8 6 24 24 H 1.08996 * 109.49874 * 58.66563 * 23 9 8 25 25 O 1.42903 * 109.49735 * 298.56507 * 23 9 8 26 26 H 4.44648 * 5.63282 * 179.97438 * 4 1 2 27 27 H 1.09002 * 109.47076 * 247.88088 * 3 2 1 28 28 H 1.09001 * 109.47421 * 127.87378 * 3 2 1 29 29 H 1.09005 * 109.47409 * 59.99671 * 4 3 2 30 30 H 1.09004 * 109.47263 * 299.99746 * 4 3 2 31 31 H 1.08995 * 109.46765 * 60.00112 * 5 4 3 32 32 H 1.08993 * 109.46753 * 299.99527 * 5 4 3 33 33 H 0.97001 * 119.99862 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.49952 * 301.33315 * 11 9 8 35 35 H 1.08997 * 109.49870 * 61.43581 * 11 9 8 36 36 H 1.09001 * 109.58832 * 65.14906 * 12 11 9 37 37 H 1.09000 * 109.58799 * 185.57874 * 12 11 9 38 38 H 0.97003 * 119.99445 * 180.02562 * 17 16 14 39 39 H 1.09004 * 109.58431 * 186.60241 * 22 13 12 40 40 H 1.09004 * 109.58351 * 66.18168 * 22 13 12 41 41 H 0.96693 * 113.99758 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4280 -0.1977 5 6 4.6867 -1.4274 -0.1971 6 6 5.1897 -2.8348 -0.3912 7 8 4.4019 -3.7481 -0.5180 8 7 6.5148 -3.0781 -0.4248 9 6 7.0037 -4.4462 -0.6130 10 1 6.3317 -5.1440 -0.1134 11 6 7.0536 -4.7687 -2.1082 12 6 7.5322 -6.2113 -2.2996 13 7 8.8146 -6.3805 -1.6027 14 6 9.9087 -6.8710 -2.2642 15 1 10.0057 -6.7252 -3.3298 16 6 10.8931 -7.5559 -1.5649 17 7 10.6370 -8.0330 -0.3652 18 14 12.5812 -7.8000 -2.3264 19 1 12.6125 -7.1733 -3.6724 20 1 13.6103 -7.1686 -1.4619 21 1 12.8627 -9.2528 -2.4506 22 6 8.9007 -6.0133 -0.1826 23 6 8.4068 -4.5730 -0.0149 24 1 8.3747 -4.3205 1.0449 25 8 9.2959 -3.6820 -0.6915 26 1 -1.0498 -0.0004 0.0001 27 1 3.0092 0.3878 0.9520 28 1 3.0091 0.6317 -0.8112 29 1 2.7935 -1.8152 -1.1497 30 1 2.7937 -2.0592 0.6135 31 1 5.0494 -1.0404 0.7551 32 1 5.0501 -0.7963 -1.0080 33 1 7.1448 -2.3475 -0.3237 34 1 6.0584 -4.6556 -2.5381 35 1 7.7445 -4.0873 -2.6045 36 1 6.7964 -6.8989 -1.8827 37 1 7.6643 -6.4145 -3.3623 38 1 11.3250 -8.5113 0.1235 39 1 9.9358 -6.0860 0.1514 40 1 8.2764 -6.6848 0.4069 41 1 10.2052 -3.7098 -0.3637 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099807239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:47 Heat of formation + Delta-G solvation = -25.965944 kcal Electronic energy + Delta-G solvation = -21939.099149 eV Core-core repulsion = 18627.617450 eV Total energy + Delta-G solvation = -3311.481699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.82180 -38.02634 -35.77186 -34.80147 -34.25646 -32.55664 -31.97060 -29.61785 -29.09494 -27.86271 -25.07007 -22.92310 -22.23089 -21.52254 -20.04683 -19.34501 -18.38858 -17.32850 -16.65620 -16.09980 -15.99943 -15.46223 -14.97295 -14.52192 -14.37994 -13.91861 -13.86097 -13.57740 -13.30722 -13.00565 -12.69058 -12.51192 -12.08478 -11.99189 -11.72916 -11.27295 -11.16458 -11.12743 -10.82110 -10.58279 -10.48025 -10.43129 -10.30638 -10.17728 -10.04080 -9.78084 -9.54732 -9.17794 -8.67699 -8.50339 -6.69589 -5.82797 -3.23163 2.58698 2.63157 2.82642 3.33739 3.41742 3.43383 3.46004 4.15432 4.46872 4.69635 4.80784 4.84151 4.92415 5.24947 5.27551 5.31458 5.37113 5.42008 5.45882 5.48366 5.58311 5.82160 5.93504 5.95919 6.03982 6.11470 6.21876 6.30459 6.46981 6.56741 6.79217 6.87763 6.98629 7.16520 7.41112 7.41932 7.76055 7.79538 8.22814 8.41534 8.45772 9.16718 9.79932 10.36800 11.26035 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.050479 B = 0.003072 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.557824 B = 9111.584274 C = 9256.759840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C -0.014 4.014 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.506 3.494 7 O -0.546 6.546 8 N -0.720 5.720 9 C 0.161 3.839 10 H 0.089 0.911 11 C -0.135 4.135 12 C 0.148 3.852 13 N -0.583 5.583 14 C -0.241 4.241 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.907 5.907 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.145 3.855 23 C 0.073 3.927 24 H 0.043 0.957 25 O -0.560 6.560 26 H 0.216 0.784 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.401 0.599 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.057 0.943 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.027 0.973 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 15.966 2.949 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.183 4.183 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.292 3.708 7 O -0.423 6.423 8 N -0.370 5.370 9 C 0.058 3.942 10 H 0.107 0.893 11 C -0.176 4.176 12 C 0.021 3.979 13 N -0.305 5.305 14 C -0.371 4.371 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.553 5.553 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.018 3.982 23 C 0.012 3.988 24 H 0.061 0.939 25 O -0.365 6.365 26 H 0.233 0.767 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.235 0.765 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.045 0.955 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.431 15.324 2.606 19.295 hybrid contribution 1.538 0.015 0.117 1.543 sum -9.893 15.339 2.723 18.455 Atomic orbital electron populations 1.24899 0.96005 1.00875 1.01407 1.23139 0.94616 1.00365 1.00207 1.18790 0.84811 0.98274 1.03222 1.21273 0.93166 0.95004 1.04249 1.21679 0.97195 0.94998 1.04259 1.20636 0.82588 0.91088 0.76438 1.90703 1.55364 1.46486 1.49787 1.46242 1.06621 1.10968 1.73191 1.20991 0.93306 0.82448 0.97500 0.89309 1.22288 1.00146 1.00248 0.94889 1.20901 0.88196 0.92052 0.96787 1.43894 1.06197 1.73401 1.07054 1.19229 0.97083 1.27744 0.93012 0.91613 1.25024 0.99889 0.97663 0.97455 1.70034 1.32606 1.39036 1.13578 0.86210 0.84443 0.77402 0.78662 1.20275 1.21639 1.21820 1.21445 1.02202 0.88386 0.86197 1.22831 0.88858 0.94120 0.92989 0.93946 1.86342 1.22677 1.63130 1.64366 0.76748 0.89504 0.89480 0.90712 0.90749 0.88890 0.88805 0.76455 0.92948 0.91259 0.96264 0.92465 0.93707 0.88614 0.95487 0.77855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.96 19.25 29.55 0.57 -1.39 16 2 C -0.18 -1.83 13.34 -37.12 -0.50 -2.32 16 3 C -0.01 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.10 -0.98 4.46 -26.73 -0.12 -1.09 16 5 C -0.14 -1.29 5.70 -27.88 -0.16 -1.45 16 6 C 0.51 7.14 7.79 -10.98 -0.09 7.05 16 7 O -0.55 -9.98 15.65 5.56 0.09 -9.89 16 8 N -0.72 -10.22 5.05 -53.76 -0.27 -10.49 16 9 C 0.16 2.85 2.20 -67.89 -0.15 2.70 16 10 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 11 C -0.14 -2.57 5.51 -26.61 -0.15 -2.72 16 12 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 13 N -0.58 -14.35 2.94 -172.31 -0.51 -14.86 16 14 C -0.24 -6.50 9.59 -15.06 -0.14 -6.64 16 15 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 16 C 0.00 -0.07 4.91 -17.43 -0.09 -0.16 16 17 N -0.91 -25.62 11.19 55.49 0.62 -25.00 16 18 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.14 3.28 4.95 -3.71 -0.02 3.26 16 23 C 0.07 1.31 3.38 -26.61 -0.09 1.22 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 O -0.56 -9.66 12.09 -35.23 -0.43 -10.08 16 26 H 0.22 1.23 7.80 -54.10 -0.42 0.81 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 30 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.40 4.84 8.26 -40.82 -0.34 4.51 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.38 7.61 -51.93 -0.40 0.98 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 38 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.10 2.37 6.04 -51.93 -0.31 2.06 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.37 5.61 9.08 45.56 0.41 6.02 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -32.36 342.94 -7.10 -39.46 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.63 Total: 8.06 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.12 Total: 1.36 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.16 Total: -50.35 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.34 Total: -19.98 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.36 -7.10 -39.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099807239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.497 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds