Wall clock time and date at job start Tue Mar 31 2020 01:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35135 * 126.44608 * 2 1 4 4 O 1.33926 * 108.77013 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38580 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98846 * 180.02562 * 5 4 3 7 7 O 1.21695 * 120.00236 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99952 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47131 * 35.00870 * 9 8 6 11 11 C 1.52998 * 109.47262 * 275.00296 * 9 8 6 12 12 C 1.53007 * 109.46782 * 155.00310 * 9 8 6 13 13 C 1.52998 * 109.46975 * 295.00032 * 12 9 8 14 14 C 1.52998 * 109.47072 * 180.02562 * 13 12 9 15 15 N 1.46502 * 109.47389 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00089 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99981 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00108 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99811 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00387 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46833 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47196 * 119.99975 * 20 18 16 23 23 H 1.48498 * 109.47106 * 240.00367 * 20 18 16 24 24 C 1.36550 * 108.02428 * 0.26562 * 5 4 3 25 25 H 1.09000 * 109.47320 * 89.97265 * 1 2 3 26 26 H 1.08998 * 109.47580 * 209.97492 * 1 2 3 27 27 H 1.08999 * 109.47264 * 329.97737 * 1 2 3 28 28 H 1.07999 * 125.61116 * 359.96235 * 3 2 1 29 29 H 0.96995 * 120.00018 * 0.27849 * 8 6 5 30 30 H 1.09001 * 109.47093 * 60.00233 * 11 9 8 31 31 H 1.09002 * 109.47121 * 180.02562 * 11 9 8 32 32 H 1.09002 * 109.46901 * 299.99917 * 11 9 8 33 33 H 1.08995 * 109.46869 * 54.99905 * 12 9 8 34 34 H 1.09000 * 109.46715 * 175.00396 * 12 9 8 35 35 H 1.09002 * 109.47050 * 299.99956 * 13 12 9 36 36 H 1.09000 * 109.47076 * 60.00044 * 13 12 9 37 37 H 1.08998 * 109.47261 * 300.00233 * 14 13 12 38 38 H 1.09000 * 109.47285 * 59.99987 * 14 13 12 39 39 H 0.97001 * 119.99744 * 359.97438 * 15 14 13 40 40 H 0.97008 * 119.99998 * 179.97438 * 19 18 16 41 41 H 1.07999 * 126.64202 * 179.69408 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8378 -1.4941 -0.0003 7 8 4.7471 -2.7076 -0.0006 8 7 6.0520 -0.9091 0.0001 9 6 7.2626 -1.7343 0.0007 10 1 7.0890 -2.6346 -0.5888 11 6 7.6126 -2.1253 1.4379 12 6 8.4206 -0.9413 -0.6086 13 6 8.1247 -0.6578 -2.0827 14 6 9.2829 0.1347 -2.6921 15 7 8.9994 0.4067 -4.1034 16 6 9.9005 1.1070 -4.8602 17 1 10.8200 1.4592 -4.4166 18 6 9.6320 1.3643 -6.1975 19 7 8.5111 0.9355 -6.7381 20 14 10.8609 2.3202 -7.2298 21 1 12.0313 2.6870 -6.3926 22 1 11.3112 1.4795 -8.3681 23 1 10.2174 3.5535 -7.7495 24 6 2.3407 -1.1292 -0.0057 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8898 0.5142 28 1 1.9770 2.1145 -0.0006 29 1 6.1244 0.0581 0.0044 30 1 6.7877 -2.6902 1.8719 31 1 8.5136 -2.7388 1.4384 32 1 7.7863 -1.2249 2.0273 33 1 8.5367 0.0012 -0.0735 34 1 9.3402 -1.5209 -0.5275 35 1 8.0086 -1.6003 -2.6177 36 1 7.2051 -0.0782 -2.1637 37 1 9.3996 1.0771 -2.1571 38 1 10.2023 -0.4452 -2.6111 39 1 8.1736 0.0901 -4.5020 40 1 8.3233 1.1156 -7.6726 41 1 2.0266 -2.1624 -0.0116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277273029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:03 Heat of formation + Delta-G solvation = -31.360024 kcal Electronic energy + Delta-G solvation = -21195.699325 eV Core-core repulsion = 17883.983721 eV Total energy + Delta-G solvation = -3311.715604 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.89040 -39.74048 -36.81594 -34.89810 -34.42915 -32.62849 -31.43142 -30.40207 -29.35453 -27.51791 -25.69658 -24.05845 -22.82747 -21.32509 -20.94290 -20.73771 -20.12508 -18.10307 -17.00371 -16.63749 -16.55401 -16.24946 -14.85313 -14.66889 -14.60680 -14.20727 -13.82275 -13.70903 -13.49882 -13.42604 -13.26001 -12.99179 -12.85698 -12.70427 -12.24310 -12.10489 -11.95807 -11.31684 -11.17657 -10.86162 -10.79981 -10.50054 -10.40701 -10.28376 -9.97173 -9.92983 -9.67826 -9.24609 -8.85387 -8.76468 -6.89256 -5.74057 -3.02825 0.89907 2.08866 2.51584 3.06822 3.11142 3.44490 3.49646 3.52293 4.43891 4.52744 4.58127 4.70068 4.76197 5.00959 5.09306 5.14556 5.32768 5.38918 5.42370 5.53657 5.55320 5.59500 5.62354 5.68358 5.72570 5.78318 5.94930 6.06089 6.10759 6.16613 6.21119 6.36906 6.38865 6.42876 6.64887 6.88675 6.91966 7.36873 7.72109 7.98074 8.44944 9.55696 10.14991 10.49273 11.48994 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.003384 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.883482 B = 8271.303542 C = 9598.044417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.197 4.197 3 C -0.008 4.008 4 O -0.160 6.160 5 C -0.074 4.074 6 C 0.604 3.396 7 O -0.524 6.524 8 N -0.709 5.709 9 C 0.140 3.860 10 H 0.092 0.908 11 C -0.163 4.163 12 C -0.123 4.123 13 C -0.127 4.127 14 C 0.153 3.847 15 N -0.735 5.735 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.120 4.120 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.209 0.791 29 H 0.406 0.594 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -2.121 19.105 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.198 4.198 3 C -0.078 4.078 4 O -0.055 6.055 5 C -0.126 4.126 6 C 0.390 3.610 7 O -0.402 6.402 8 N -0.360 5.360 9 C 0.036 3.964 10 H 0.110 0.890 11 C -0.221 4.221 12 C -0.161 4.161 13 C -0.165 4.165 14 C 0.026 3.974 15 N -0.379 5.379 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.140 4.140 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.226 0.774 29 H 0.241 0.759 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.495 -2.727 19.054 22.948 hybrid contribution 0.201 0.942 -0.852 1.286 sum -12.293 -1.785 18.203 22.038 Atomic orbital electron populations 1.20176 0.88622 1.02750 1.02444 1.20493 0.97743 0.92426 1.09122 1.24218 0.79918 1.00090 1.03534 1.84072 1.29356 1.21653 1.70430 1.22098 0.96225 0.80617 1.13687 1.16536 0.81363 0.86356 0.76739 1.90873 1.86039 1.12265 1.50994 1.46021 1.05196 1.10946 1.73791 1.21146 0.83489 0.94846 0.96903 0.88978 1.22183 1.02043 1.01714 0.96166 1.21857 0.97247 1.00386 0.96621 1.21747 0.99814 1.01013 0.93918 1.20643 0.94629 0.95660 0.86504 1.42400 1.23508 1.66686 1.05317 1.19289 0.99322 1.26543 0.91812 0.91159 1.24760 0.97657 1.01707 0.97069 1.69684 1.24511 1.51239 1.12819 0.86109 0.80333 0.79338 0.80384 1.20563 1.21859 1.21867 1.21836 0.90577 1.00553 1.01067 0.91166 0.91332 0.91476 0.77437 0.75865 0.92237 0.91275 0.92411 0.91310 0.90028 0.91874 0.92045 0.96563 0.96463 0.78330 0.93586 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.39 36.00 0.37 -0.17 16 2 C -0.20 -1.87 6.14 -104.93 -0.64 -2.51 16 3 C -0.01 -0.07 12.00 29.63 0.36 0.29 16 4 O -0.16 -1.84 10.40 5.02 0.05 -1.79 16 5 C -0.07 -0.95 7.13 -36.80 -0.26 -1.21 16 6 C 0.60 8.45 7.75 -12.86 -0.10 8.35 16 7 O -0.52 -8.71 16.53 5.19 0.09 -8.62 16 8 N -0.71 -8.60 4.52 -55.12 -0.25 -8.85 16 9 C 0.14 1.65 2.57 -67.92 -0.17 1.47 16 10 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 11 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 12 C -0.12 -1.48 4.76 -26.73 -0.13 -1.60 16 13 C -0.13 -2.06 5.22 -26.73 -0.14 -2.20 16 14 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 15 N -0.74 -19.33 5.60 -59.91 -0.34 -19.67 16 16 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 19 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 20 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 C -0.12 -1.39 10.57 -39.39 -0.42 -1.80 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.41 4.40 8.36 -40.82 -0.34 4.06 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.63 7.67 -40.82 -0.31 10.32 16 40 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -34.18 351.92 -6.99 -41.17 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.49 Total: 8.07 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -1.05 Total: -5.15 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.14 Total: -56.74 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.14 Total: -10.41 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.18 -6.99 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277273029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.812 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds