Wall clock time and date at job start Tue Mar 31 2020 01:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35135 * 126.44608 * 2 1 4 4 O 1.33926 * 108.77013 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38580 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98846 * 180.02562 * 5 4 3 7 7 O 1.21695 * 120.00236 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99952 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47131 * 35.00870 * 9 8 6 11 11 C 1.52998 * 109.47262 * 275.00296 * 9 8 6 12 12 C 1.53007 * 109.46782 * 155.00310 * 9 8 6 13 13 C 1.52998 * 109.46975 * 295.00032 * 12 9 8 14 14 C 1.52998 * 109.47072 * 180.02562 * 13 12 9 15 15 N 1.46502 * 109.47389 * 180.02562 * 14 13 12 16 16 C 1.36939 * 120.00089 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99981 * 359.97438 * 16 15 14 18 18 C 1.38802 * 120.00108 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99811 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00387 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46833 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47196 * 119.99975 * 20 18 16 23 23 H 1.48498 * 109.47106 * 240.00367 * 20 18 16 24 24 C 1.36550 * 108.02428 * 0.26562 * 5 4 3 25 25 H 1.09000 * 109.47320 * 89.97265 * 1 2 3 26 26 H 1.08998 * 109.47580 * 209.97492 * 1 2 3 27 27 H 1.08999 * 109.47264 * 329.97737 * 1 2 3 28 28 H 1.07999 * 125.61116 * 359.96235 * 3 2 1 29 29 H 0.96995 * 120.00018 * 0.27849 * 8 6 5 30 30 H 1.09001 * 109.47093 * 60.00233 * 11 9 8 31 31 H 1.09002 * 109.47121 * 180.02562 * 11 9 8 32 32 H 1.09002 * 109.46901 * 299.99917 * 11 9 8 33 33 H 1.08995 * 109.46869 * 54.99905 * 12 9 8 34 34 H 1.09000 * 109.46715 * 175.00396 * 12 9 8 35 35 H 1.09002 * 109.47050 * 299.99956 * 13 12 9 36 36 H 1.09000 * 109.47076 * 60.00044 * 13 12 9 37 37 H 1.08998 * 109.47261 * 300.00233 * 14 13 12 38 38 H 1.09000 * 109.47285 * 59.99987 * 14 13 12 39 39 H 0.97001 * 119.99744 * 359.97438 * 15 14 13 40 40 H 0.97008 * 119.99998 * 179.97438 * 19 18 16 41 41 H 1.07999 * 126.64202 * 179.69408 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5857 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8378 -1.4941 -0.0003 7 8 4.7471 -2.7076 -0.0006 8 7 6.0520 -0.9091 0.0001 9 6 7.2626 -1.7343 0.0007 10 1 7.0890 -2.6346 -0.5888 11 6 7.6126 -2.1253 1.4379 12 6 8.4206 -0.9413 -0.6086 13 6 8.1247 -0.6578 -2.0827 14 6 9.2829 0.1347 -2.6921 15 7 8.9994 0.4067 -4.1034 16 6 9.9005 1.1070 -4.8602 17 1 10.8200 1.4592 -4.4166 18 6 9.6320 1.3643 -6.1975 19 7 8.5111 0.9355 -6.7381 20 14 10.8609 2.3202 -7.2298 21 1 12.0313 2.6870 -6.3926 22 1 11.3112 1.4795 -8.3681 23 1 10.2174 3.5535 -7.7495 24 6 2.3407 -1.1292 -0.0057 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8898 0.5142 28 1 1.9770 2.1145 -0.0006 29 1 6.1244 0.0581 0.0044 30 1 6.7877 -2.6902 1.8719 31 1 8.5136 -2.7388 1.4384 32 1 7.7863 -1.2249 2.0273 33 1 8.5367 0.0012 -0.0735 34 1 9.3402 -1.5209 -0.5275 35 1 8.0086 -1.6003 -2.6177 36 1 7.2051 -0.0782 -2.1637 37 1 9.3996 1.0771 -2.1571 38 1 10.2023 -0.4452 -2.6111 39 1 8.1736 0.0901 -4.5020 40 1 8.3233 1.1156 -7.6726 41 1 2.0266 -2.1624 -0.0116 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277273029.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:01 Heat of formation + Delta-G solvation = -54.463033 kcal Electronic energy + Delta-G solvation = -21196.701147 eV Core-core repulsion = 17883.983721 eV Total energy + Delta-G solvation = -3312.717425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71282 -40.79402 -38.03505 -36.57553 -35.21907 -34.21461 -32.80781 -31.49789 -30.69418 -28.15253 -27.25544 -25.23324 -24.43550 -22.41685 -22.17384 -21.81295 -21.05608 -19.15502 -18.94741 -17.61532 -17.42688 -17.17165 -16.64478 -15.95161 -15.84584 -15.42312 -15.35962 -15.07362 -14.58425 -14.35903 -14.10074 -13.97924 -13.87205 -13.55153 -13.45923 -13.21082 -13.03976 -12.81083 -12.56776 -12.41606 -12.24884 -12.06690 -11.89407 -11.77188 -11.53094 -11.39290 -10.95642 -10.75515 -10.26965 -9.56272 -9.02214 -7.96838 -5.26674 -0.00611 1.31964 1.46383 1.47909 1.58147 1.65409 2.06071 2.20539 2.54950 3.36928 3.56001 3.69927 3.80720 3.94574 4.03766 4.08216 4.25984 4.32241 4.38957 4.56097 4.62955 4.65286 4.80983 4.84219 4.86907 4.88188 4.90521 4.97577 5.02625 5.07272 5.09122 5.29510 5.30899 5.41025 5.46663 5.49094 5.50729 5.82487 6.25638 6.39496 6.96859 7.30849 8.07726 8.29894 9.27244 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.003384 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.883482 B = 8271.303542 C = 9598.044417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.003 3.997 4 O -0.169 6.169 5 C -0.105 4.105 6 C 0.600 3.400 7 O -0.561 6.561 8 N -0.702 5.702 9 C 0.141 3.859 10 H 0.071 0.929 11 C -0.155 4.155 12 C -0.109 4.109 13 C -0.115 4.115 14 C 0.150 3.850 15 N -0.752 5.752 16 C -0.246 4.246 17 H 0.078 0.922 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.293 1.293 23 H -0.291 1.291 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.250 0.750 29 H 0.413 0.587 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.023 0.977 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -0.613 20.353 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C -0.067 4.067 4 O -0.064 6.064 5 C -0.157 4.157 6 C 0.388 3.612 7 O -0.443 6.443 8 N -0.352 5.352 9 C 0.037 3.963 10 H 0.089 0.911 11 C -0.213 4.213 12 C -0.147 4.147 13 C -0.153 4.153 14 C 0.024 3.976 15 N -0.394 5.394 16 C -0.378 4.378 17 H 0.096 0.904 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.220 1.220 23 H -0.219 1.219 24 C -0.147 4.147 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.266 0.734 29 H 0.250 0.750 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.127 -1.203 20.352 23.722 hybrid contribution 0.042 0.497 -1.191 1.291 sum -12.086 -0.705 19.161 22.665 Atomic orbital electron populations 1.20257 0.86458 1.04015 1.03065 1.20870 0.99265 0.91663 1.09058 1.25115 0.78809 1.01753 1.00983 1.84056 1.30801 1.20876 1.70678 1.21910 0.96037 0.81340 1.16400 1.16742 0.82164 0.86124 0.76211 1.90836 1.86669 1.13755 1.53004 1.46016 1.04922 1.11337 1.72964 1.21133 0.83193 0.93984 0.97972 0.91092 1.22111 1.02156 1.02462 0.94560 1.21764 0.97813 1.01647 0.93468 1.21608 0.97873 0.99363 0.96431 1.20853 0.96298 0.96567 0.83843 1.42685 1.22717 1.66510 1.07537 1.19721 0.99751 1.25954 0.92372 0.90406 1.25653 0.99688 1.03355 0.98487 1.69849 1.26579 1.53014 1.12891 0.85016 0.78402 0.77541 0.78454 1.18792 1.22026 1.21857 1.22100 0.90904 1.01388 1.00336 0.90778 0.91058 0.89300 0.73390 0.75039 0.93623 0.89660 0.90889 0.89374 0.88431 0.93375 0.92883 0.95664 0.95935 0.79778 0.93999 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.39 71.23 0.74 -0.16 16 2 C -0.21 -3.66 6.14 -20.06 -0.12 -3.79 16 3 C 0.00 0.04 12.00 67.10 0.81 0.85 16 4 O -0.17 -3.75 10.40 -4.95 -0.05 -3.80 16 5 C -0.11 -2.73 7.13 24.07 0.17 -2.56 16 6 C 0.60 17.37 7.75 86.44 0.67 18.04 16 7 O -0.56 -19.61 16.53 -4.33 -0.07 -19.68 16 8 N -0.70 -16.99 4.52 -446.50 -2.02 -19.01 16 9 C 0.14 3.23 2.57 44.99 0.12 3.35 16 10 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 11 C -0.15 -2.87 9.48 71.98 0.68 -2.18 16 12 C -0.11 -2.42 4.76 30.60 0.15 -2.27 16 13 C -0.11 -3.67 5.22 30.59 0.16 -3.51 16 14 C 0.15 6.00 6.26 86.38 0.54 6.54 16 15 N -0.75 -39.72 5.60 -343.46 -1.92 -41.65 16 16 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 19 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 20 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 C -0.13 -2.97 10.57 22.39 0.24 -2.73 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.25 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.41 8.70 8.36 -92.71 -0.78 7.92 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.37 21.05 7.67 -92.71 -0.71 20.34 16 40 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 41 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -74.66 351.92 3.24 -71.42 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.46 Total: 30.75 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.45 Total: -5.93 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -3.66 Total: -121.52 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.12 Total: -23.48 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.66 3.24 -71.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277273029.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.957 kcal (2) G-P(sol) polarization free energy of solvation -74.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds