Wall clock time and date at job start Tue Mar 31 2020 01:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34519 * 125.78595 * 2 1 4 4 C 1.41387 * 106.83618 * 179.75169 * 3 2 1 5 5 C 1.34509 * 106.84302 * 0.37041 * 4 3 2 6 6 C 1.50705 * 125.78904 * 179.89238 * 5 4 3 7 7 H 1.08996 * 109.47036 * 359.71204 * 6 5 4 8 8 C 1.52999 * 109.47104 * 119.71399 * 6 5 4 9 9 C 1.50702 * 109.47082 * 239.71379 * 6 5 4 10 10 O 1.21283 * 119.99575 * 0.02562 * 9 6 5 11 11 N 1.34771 * 120.00335 * 179.97438 * 9 6 5 12 12 C 1.46506 * 119.99594 * 0.02562 * 11 9 6 13 13 C 1.46501 * 120.00308 * 180.02562 * 11 9 6 14 14 C 1.52995 * 109.46937 * 269.99876 * 13 11 9 15 15 N 1.46501 * 109.47328 * 179.97438 * 14 13 11 16 16 C 1.36933 * 120.00296 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99844 * 359.97438 * 16 15 14 18 18 C 1.38816 * 119.99836 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99958 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99746 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47324 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47224 * 120.00298 * 20 18 16 23 23 H 1.48504 * 109.47442 * 240.00289 * 20 18 16 24 24 O 1.34296 * 108.42219 * 359.62655 * 5 4 3 25 25 H 1.09008 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47033 * 299.99484 * 1 2 3 27 27 H 1.08990 * 109.47230 * 60.00176 * 1 2 3 28 28 H 1.07991 * 126.58158 * 359.97438 * 3 2 1 29 29 H 1.08003 * 126.57659 * 180.23538 * 4 3 2 30 30 H 1.08996 * 109.47066 * 300.00164 * 8 6 5 31 31 H 1.09002 * 109.46863 * 60.00488 * 8 6 5 32 32 H 1.08999 * 109.46772 * 179.97438 * 8 6 5 33 33 H 1.09001 * 109.47060 * 90.00388 * 12 11 9 34 34 H 1.09004 * 109.47073 * 209.99877 * 12 11 9 35 35 H 1.09000 * 109.47212 * 329.99960 * 12 11 9 36 36 H 1.09000 * 109.46877 * 29.99967 * 13 11 9 37 37 H 1.09000 * 109.47251 * 150.00072 * 13 11 9 38 38 H 1.08999 * 109.47267 * 300.00296 * 14 13 11 39 39 H 1.09000 * 109.46990 * 60.00037 * 14 13 11 40 40 H 0.97002 * 119.99333 * 359.97438 * 15 14 13 41 41 H 0.97006 * 119.99559 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0059 5 6 3.5814 -0.7121 0.0008 6 6 4.7707 -1.6377 0.0018 7 1 5.6886 -1.0499 0.0023 8 6 4.7293 -2.5198 1.2513 9 6 4.7316 -2.5073 -1.2284 10 8 3.8273 -2.3867 -2.0276 11 7 5.7019 -3.4180 -1.4411 12 6 6.7946 -3.5631 -0.4760 13 6 5.6642 -4.2629 -2.6374 14 6 4.8836 -5.5430 -2.3331 15 7 4.8453 -6.3877 -3.5295 16 6 4.1961 -7.5930 -3.4962 17 1 3.7127 -7.9210 -2.5878 18 6 4.1594 -8.3930 -4.6300 19 7 4.7490 -7.9933 -5.7368 20 14 3.2745 -10.0374 -4.5845 21 1 2.6993 -10.2528 -3.2324 22 1 2.1838 -10.0407 -5.5922 23 1 4.2365 -11.1260 -4.8927 24 8 2.2925 -1.0894 0.0005 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.9665 2.1204 -0.0004 29 1 4.5212 1.2434 0.0110 30 1 4.7575 -1.8909 2.1411 31 1 3.8114 -3.1076 1.2508 32 1 5.5892 -3.1896 1.2518 33 1 6.5187 -4.3016 0.2768 34 1 7.6957 -3.8914 -0.9940 35 1 6.9822 -2.6043 0.0073 36 1 5.1750 -3.7230 -3.4481 37 1 6.6814 -4.5193 -2.9333 38 1 5.3727 -6.0828 -1.5222 39 1 3.8664 -5.2866 -2.0371 40 1 5.2792 -6.0928 -4.3454 41 1 4.7237 -8.5526 -6.5290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493721421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:48 Heat of formation + Delta-G solvation = -4.140812 kcal Electronic energy + Delta-G solvation = -21888.716235 eV Core-core repulsion = 18578.180945 eV Total energy + Delta-G solvation = -3310.535290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.63426 -39.91210 -35.93293 -34.85356 -33.96151 -33.15589 -31.55532 -30.93419 -28.21148 -26.89363 -26.35888 -24.37024 -23.10953 -21.81852 -21.54370 -20.30015 -19.12227 -17.20618 -17.05334 -16.74103 -16.05022 -15.51424 -15.44145 -14.66156 -14.31306 -14.12751 -13.79555 -13.40713 -13.25084 -13.20124 -13.07466 -12.94890 -12.80967 -12.76370 -12.52564 -12.32321 -12.03466 -11.73416 -11.45742 -11.18757 -10.97221 -10.85183 -10.65396 -10.05353 -9.89142 -9.75920 -9.57552 -8.85099 -8.51236 -8.29548 -6.90359 -5.73663 -3.02689 1.68466 2.53659 2.69420 2.85169 3.13192 3.45955 3.51489 3.53966 4.32903 4.44394 4.64241 4.72367 4.80275 4.89398 5.00738 5.07053 5.25402 5.31066 5.31730 5.37583 5.46000 5.53996 5.56545 5.62076 5.67216 5.77888 5.84748 5.85479 5.96986 6.06106 6.12095 6.13627 6.49935 6.57527 6.77080 6.93492 7.19839 7.47131 7.73441 8.27506 8.44941 9.55834 10.12163 10.47374 11.49404 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020845 B = 0.003621 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.909302 B = 7730.622117 C = 8508.019978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.217 4.217 4 C -0.207 4.207 5 C 0.015 3.985 6 C -0.027 4.027 7 H 0.122 0.878 8 C -0.158 4.158 9 C 0.512 3.488 10 O -0.518 6.518 11 N -0.610 5.610 12 C 0.074 3.926 13 C 0.108 3.892 14 C 0.143 3.857 15 N -0.731 5.731 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 O -0.156 6.156 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.018 0.982 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.460 18.547 16.520 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C -0.236 4.236 4 C -0.226 4.226 5 C -0.036 4.036 6 C -0.049 4.049 7 H 0.140 0.860 8 C -0.215 4.215 9 C 0.298 3.702 10 O -0.393 6.393 11 N -0.344 5.344 12 C -0.069 4.069 13 C -0.014 4.014 14 C 0.014 3.986 15 N -0.375 5.375 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.740 3.260 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 O -0.051 6.051 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.040 0.960 40 H 0.217 0.783 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.773 18.158 16.144 24.310 hybrid contribution -0.131 -0.630 -0.339 0.727 sum 0.642 17.528 15.806 23.611 Atomic orbital electron populations 1.20299 0.85311 1.04174 1.03282 1.22447 0.94069 0.84238 1.05371 1.21451 0.92589 0.99225 1.10352 1.21458 0.98274 0.93374 1.09511 1.21483 0.82900 0.93365 1.05876 1.19875 0.94165 0.95204 0.95606 0.85999 1.22084 1.04463 0.99811 0.95132 1.20356 0.82044 0.80698 0.87053 1.90776 1.33925 1.68295 1.46263 1.47748 1.25026 1.37180 1.24473 1.22013 0.90087 1.01777 0.93017 1.21744 1.01480 0.91763 0.86440 1.20903 0.97036 0.89458 0.91162 1.42221 1.66039 1.19634 1.09645 1.19259 1.26423 0.94284 0.96825 0.91159 1.24750 1.01335 0.99115 0.95849 1.69676 1.48704 1.38211 1.01641 0.86090 0.78948 0.83755 0.77256 1.20551 1.21810 1.21839 1.84005 1.15954 1.34711 1.70443 0.90481 0.89876 0.89696 0.83673 0.83646 0.91080 0.91369 0.89899 0.91951 0.90655 0.91129 0.89743 0.90352 0.96397 0.95989 0.78276 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 36.00 0.38 -0.29 16 2 C -0.01 -0.14 7.32 -35.62 -0.26 -0.40 16 3 C -0.22 -2.56 10.81 -39.70 -0.43 -2.99 16 4 C -0.21 -2.50 10.78 -39.70 -0.43 -2.93 16 5 C 0.01 0.20 5.20 -35.62 -0.19 0.02 16 6 C -0.03 -0.31 2.33 -92.92 -0.22 -0.53 16 7 H 0.12 0.99 7.36 -51.93 -0.38 0.61 16 8 C -0.16 -1.48 8.81 37.16 0.33 -1.15 16 9 C 0.51 8.10 7.07 -10.99 -0.08 8.02 16 10 O -0.52 -10.84 15.38 -1.22 -0.02 -10.86 16 11 N -0.61 -8.72 2.87 -181.57 -0.52 -9.24 16 12 C 0.07 0.68 8.85 59.85 0.53 1.21 16 13 C 0.11 1.91 5.56 -4.04 -0.02 1.89 16 14 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 15 N -0.73 -19.57 5.60 -59.91 -0.34 -19.90 16 16 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 17 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 18 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.99 13.06 55.49 0.72 -28.27 16 20 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 O -0.16 -2.44 10.35 -1.06 -0.01 -2.45 16 25 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.63 4.53 -51.93 -0.24 0.39 16 33 H 0.06 0.54 6.95 -51.93 -0.36 0.18 16 34 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 35 H 0.07 0.44 6.01 -51.93 -0.31 0.13 16 36 H 0.08 1.68 7.42 -51.93 -0.39 1.29 16 37 H 0.08 1.25 7.89 -51.93 -0.41 0.84 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.38 10.63 7.67 -40.82 -0.31 10.31 16 41 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -36.96 342.33 -6.85 -43.81 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.16 Total: 5.41 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.66 Total: -1.68 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -0.13 Total: -57.41 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.03 Total: -13.31 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.96 -6.85 -43.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493721421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.666 kcal (2) G-P(sol) polarization free energy of solvation -36.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds