Wall clock time and date at job start Tue Mar 31 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42906 * 109.45664 * 220.72803 * 3 2 1 5 5 C 1.53039 * 109.46393 * 340.69888 * 3 2 1 6 6 C 1.53198 * 109.30971 * 58.64453 * 5 3 2 7 7 N 1.46930 * 108.77600 * 54.63384 * 6 5 3 8 8 C 1.34776 * 120.63007 * 126.36695 * 7 6 5 9 9 O 1.21586 * 120.00089 * 5.01668 * 8 7 6 10 10 N 1.34776 * 120.00105 * 184.74296 * 8 7 6 11 11 C 1.46500 * 120.00046 * 175.20238 * 10 8 7 12 12 C 1.52998 * 109.47092 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47134 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47050 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00356 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99974 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00014 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47308 * 89.99316 * 18 16 14 20 20 H 1.48504 * 109.47120 * 209.99807 * 18 16 14 21 21 H 1.48504 * 109.47007 * 329.99236 * 18 16 14 22 22 C 1.46920 * 118.73977 * 306.64493 * 7 6 5 23 23 C 1.52758 * 109.01143 * 53.30670 * 22 7 6 24 24 H 4.38431 * 5.44505 * 179.97438 * 4 1 2 25 25 H 0.96705 * 113.99741 * 299.97589 * 4 3 2 26 26 H 1.08992 * 109.49739 * 298.69651 * 5 3 2 27 27 H 1.09002 * 109.52271 * 178.61043 * 5 3 2 28 28 H 1.09003 * 109.58471 * 294.84720 * 6 5 3 29 29 H 1.08997 * 109.70079 * 174.49258 * 6 5 3 30 30 H 0.96996 * 119.99601 * 355.19602 * 10 8 7 31 31 H 1.09006 * 109.46654 * 299.99528 * 11 10 8 32 32 H 1.08998 * 109.47405 * 59.99451 * 11 10 8 33 33 H 1.08997 * 109.46978 * 300.00054 * 12 11 10 34 34 H 1.09006 * 109.47018 * 59.99956 * 12 11 10 35 35 H 1.08997 * 109.47735 * 300.00206 * 13 12 11 36 36 H 1.09006 * 109.46701 * 60.00378 * 13 12 11 37 37 H 0.97007 * 119.99762 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.58820 * 173.14396 * 22 7 6 39 39 H 1.09007 * 109.58685 * 293.56783 * 22 7 6 40 40 H 1.09004 * 109.56763 * 185.55637 * 23 22 7 41 41 H 1.09000 * 109.38432 * 65.51660 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1215 1.0220 0.8792 5 6 3.1565 -1.3609 0.4769 6 6 2.6165 -2.4567 -0.4476 7 7 2.9791 -2.1277 -1.8329 8 6 3.6332 -3.0204 -2.6020 9 8 3.8484 -4.1414 -2.1832 10 7 4.0439 -2.6724 -3.8376 11 6 4.8457 -3.6055 -4.6329 12 6 5.1761 -2.9700 -5.9849 13 6 6.0140 -3.9443 -6.8153 14 6 6.3389 -3.3186 -8.1472 15 1 5.9836 -2.3251 -8.3782 16 6 7.0896 -4.0143 -9.0709 17 7 7.5226 -5.2238 -8.7895 18 14 7.4929 -3.2383 -10.7217 19 1 8.7705 -2.4886 -10.6173 20 1 7.6257 -4.3020 -11.7494 21 1 6.4031 -2.3076 -11.1106 22 6 2.6204 -0.8047 -2.3619 23 6 3.1554 0.2704 -1.4177 24 1 -1.0502 -0.0002 -0.0004 25 1 2.8359 1.9136 0.6371 26 1 2.8127 -1.5421 1.4952 27 1 4.2463 -1.3698 0.4538 28 1 1.5316 -2.5096 -0.3565 29 1 3.0535 -3.4169 -0.1737 30 1 3.8085 -1.8041 -4.2002 31 1 5.7704 -3.8334 -4.1025 32 1 4.2820 -4.5248 -4.7920 33 1 4.2513 -2.7423 -6.5150 34 1 5.7397 -2.0506 -5.8262 35 1 6.9388 -4.1716 -6.2850 36 1 5.4507 -4.8639 -6.9741 37 1 8.0512 -5.7131 -9.4394 38 1 3.0620 -0.6742 -3.3497 39 1 1.5358 -0.7202 -2.4301 40 1 2.8108 1.2505 -1.7478 41 1 4.2452 0.2471 -1.4233 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518936708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:47 Heat of formation + Delta-G solvation = -54.596918 kcal Electronic energy + Delta-G solvation = -21554.713869 eV Core-core repulsion = 18241.990638 eV Total energy + Delta-G solvation = -3312.723231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.68639 -39.84761 -37.19825 -36.74550 -35.25786 -34.00574 -33.15019 -32.12184 -31.83337 -28.57408 -26.22203 -24.95459 -24.33885 -22.86476 -22.30437 -21.00363 -19.47811 -19.19071 -18.48715 -17.38848 -17.34572 -16.91292 -16.48897 -16.09571 -15.91333 -15.86695 -15.40344 -15.18665 -14.69299 -14.34467 -14.16117 -13.71465 -13.54531 -13.39577 -13.05891 -12.75128 -12.71856 -12.51778 -12.40016 -12.34431 -12.06559 -11.67222 -11.65519 -11.58339 -11.48951 -11.29083 -11.14028 -10.89161 -10.54341 -10.28017 -9.60026 -8.18357 -6.29884 1.42579 1.44133 1.53615 1.55810 1.76274 1.81996 2.05774 2.42756 2.86796 3.15554 3.19195 3.26237 3.61678 3.73773 3.93132 4.15386 4.20874 4.23527 4.33348 4.41821 4.55878 4.61609 4.65388 4.73998 4.81194 4.92725 4.96659 4.98733 5.01280 5.17376 5.21224 5.44430 5.46453 5.54584 5.72215 5.84335 5.86075 6.23527 6.62197 6.71292 6.86819 6.91555 7.39727 7.48881 8.93880 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032740 B = 0.002817 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.021975 B = 9938.199013 C =10331.919754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.245 4.245 3 C 0.250 3.750 4 O -0.560 6.560 5 C -0.114 4.114 6 C 0.135 3.865 7 N -0.626 5.626 8 C 0.701 3.299 9 O -0.636 6.636 10 N -0.730 5.730 11 C 0.148 3.852 12 C -0.100 4.100 13 C 0.024 3.976 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.259 1.259 22 C 0.110 3.890 23 C -0.150 4.150 24 H 0.245 0.755 25 H 0.396 0.604 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.409 0.591 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.069 0.931 35 H -0.008 1.008 36 H -0.008 1.008 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.892 16.521 17.723 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.246 4.246 3 C 0.209 3.791 4 O -0.369 6.369 5 C -0.153 4.153 6 C 0.012 3.988 7 N -0.363 5.363 8 C 0.402 3.598 9 O -0.518 6.518 10 N -0.388 5.388 11 C 0.024 3.976 12 C -0.138 4.138 13 C -0.014 4.014 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.792 3.208 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.183 1.183 22 C -0.013 4.013 23 C -0.188 4.188 24 H 0.261 0.739 25 H 0.247 0.753 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.248 0.752 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.011 0.989 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.348 15.083 18.240 27.678 hybrid contribution -0.007 0.550 -1.214 1.333 sum -14.355 15.634 17.026 27.210 Atomic orbital electron populations 1.25786 0.96702 0.97304 0.98252 1.23868 0.95239 1.03112 1.02348 1.17871 0.82299 0.89038 0.89907 1.86597 1.76281 1.19541 1.54458 1.21831 1.01724 0.91622 1.00097 1.21421 1.00206 0.98449 0.78739 1.47301 1.60236 1.15365 1.13390 1.16056 0.78425 0.83956 0.81339 1.90878 1.64492 1.21722 1.74681 1.45219 1.57312 1.21140 1.15128 1.21107 0.93570 0.91862 0.91084 1.21587 1.00296 0.99209 0.92673 1.18937 0.93972 0.94322 0.94155 1.21685 1.32870 1.02281 1.00975 0.91420 1.26033 0.95797 0.95334 1.02999 1.70118 1.37385 1.13034 1.37094 0.85411 0.78972 0.78077 0.78353 1.19825 1.21137 1.18314 1.21724 1.01339 0.80392 0.97804 1.22510 1.02408 1.00418 0.93483 0.73885 0.75295 0.89044 0.90675 0.90506 0.90002 0.75202 0.93430 0.93541 0.91362 0.91246 0.98933 0.98989 0.92831 0.88596 0.89849 0.87269 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 19.25 74.32 1.43 -0.38 16 2 C -0.25 -3.44 9.68 31.12 0.30 -3.14 16 3 C 0.25 3.67 1.09 -12.57 -0.01 3.65 16 4 O -0.56 -8.10 12.95 -148.98 -1.93 -10.03 16 5 C -0.11 -2.03 5.25 30.67 0.16 -1.87 16 6 C 0.13 2.83 6.07 86.36 0.52 3.35 16 7 N -0.63 -14.25 2.98 -837.74 -2.50 -16.74 16 8 C 0.70 22.09 8.30 179.05 1.49 23.58 16 9 O -0.64 -26.03 15.78 -3.99 -0.06 -26.10 16 10 N -0.73 -21.18 5.47 -478.54 -2.62 -23.80 16 11 C 0.15 5.39 5.68 86.38 0.49 5.88 16 12 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 13 C 0.02 1.24 4.97 29.85 0.15 1.39 16 14 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 15 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 17 N -0.94 -57.34 13.29 21.45 0.28 -57.06 16 18 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 C 0.11 1.64 6.06 86.22 0.52 2.17 16 23 C -0.15 -1.85 5.21 30.53 0.16 -1.69 16 24 H 0.24 1.01 7.80 -4.41 -0.03 0.98 16 25 H 0.40 2.58 9.03 -74.05 -0.67 1.91 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.44 7.38 -2.39 -0.02 1.43 16 29 H 0.08 2.07 7.03 -2.39 -0.02 2.06 16 30 H 0.41 8.99 5.93 -92.71 -0.55 8.44 16 31 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 37 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 38 H 0.10 1.23 5.57 -2.39 -0.01 1.21 16 39 H 0.08 1.10 7.38 -2.38 -0.02 1.09 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -75.51 340.31 1.09 -74.42 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.18 Total: 13.95 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 6.07 Total: -0.28 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.83 Total: -97.59 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.99 Total: -36.13 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -75.51 1.09 -74.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518936708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.820 kcal (2) G-P(sol) polarization free energy of solvation -75.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds