Wall clock time and date at job start Tue Mar 31 2020 01:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34516 * 125.78975 * 2 1 4 4 C 1.41383 * 106.84353 * 179.74696 * 3 2 1 5 5 C 1.34517 * 106.83679 * 0.37251 * 4 3 2 6 6 C 1.50703 * 125.78891 * 179.89029 * 5 4 3 7 7 H 1.09001 * 109.46968 * 359.71385 * 6 5 4 8 8 C 1.52995 * 109.47299 * 119.71347 * 6 5 4 9 9 C 1.50702 * 109.47229 * 239.71694 * 6 5 4 10 10 O 1.21290 * 119.99749 * 359.97438 * 9 6 5 11 11 N 1.34773 * 120.00507 * 180.02562 * 9 6 5 12 12 C 1.46492 * 120.00184 * 180.02562 * 11 9 6 13 13 C 1.53008 * 109.47107 * 179.97438 * 12 11 9 14 14 N 1.46496 * 109.46900 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00036 * 269.99872 * 14 13 12 16 16 C 1.36940 * 119.99935 * 90.00589 * 14 13 12 17 17 H 1.07999 * 119.99899 * 22.33205 * 16 14 13 18 18 C 1.38814 * 119.99646 * 202.33825 * 16 14 13 19 19 N 1.31620 * 120.00379 * 11.35574 * 18 16 14 20 20 Si 1.86804 * 119.99735 * 191.34844 * 18 16 14 21 21 H 1.48499 * 109.47109 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46738 * 120.00218 * 20 18 16 23 23 H 1.48498 * 109.47040 * 240.00261 * 20 18 16 24 24 O 1.34304 * 125.79028 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47543 * 300.00151 * 1 2 3 27 27 H 1.09004 * 109.47241 * 60.00404 * 1 2 3 28 28 H 1.08000 * 126.58010 * 0.02562 * 3 2 1 29 29 H 1.07992 * 126.58314 * 180.23586 * 4 3 2 30 30 H 1.09001 * 109.47079 * 60.00106 * 8 6 5 31 31 H 1.08990 * 109.47308 * 300.00239 * 8 6 5 32 32 H 1.09002 * 109.46884 * 179.97438 * 8 6 5 33 33 H 0.97005 * 119.99430 * 359.97438 * 11 9 6 34 34 H 1.09001 * 109.47030 * 299.99592 * 12 11 9 35 35 H 1.08995 * 109.47699 * 60.00125 * 12 11 9 36 36 H 1.09001 * 109.46966 * 299.99782 * 13 12 11 37 37 H 1.09004 * 109.46895 * 59.99651 * 13 12 11 38 38 H 1.08992 * 109.47164 * 94.21493 * 15 14 13 39 39 H 1.09008 * 109.46660 * 214.21305 * 15 14 13 40 40 H 1.08997 * 109.47189 * 334.20968 * 15 14 13 41 41 H 0.96998 * 120.00056 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 0.0060 5 6 3.5813 -0.7121 0.0009 6 6 4.7705 -1.6378 0.0020 7 1 5.6885 -1.0500 0.0025 8 6 4.7291 -2.5198 1.2515 9 6 4.7315 -2.5073 -1.2282 10 8 3.8268 -2.3874 -2.0271 11 7 5.7013 -3.4188 -1.4404 12 6 5.6636 -4.2636 -2.6366 13 6 6.8709 -5.2036 -2.6354 14 7 6.8328 -6.0488 -3.8314 15 6 6.1384 -7.3382 -3.7953 16 6 7.4465 -5.6336 -4.9830 17 1 8.2390 -4.9012 -4.9388 18 6 7.0499 -6.1541 -6.2072 19 7 5.9482 -6.8692 -6.2926 20 14 8.0796 -5.8393 -7.7337 21 1 9.2603 -5.0141 -7.3728 22 1 8.5357 -7.1346 -8.2988 23 1 7.2617 -5.1195 -8.7427 24 8 2.2924 -1.0894 0.0005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9665 2.1204 0.0004 29 1 4.5211 1.2433 0.0112 30 1 3.8112 -3.1076 1.2510 31 1 4.7574 -1.8910 2.1412 32 1 5.5890 -3.1897 1.2520 33 1 6.4247 -3.5149 -0.8013 34 1 4.7454 -4.8510 -2.6378 35 1 5.6940 -3.6350 -3.5265 36 1 7.7889 -4.6159 -2.6345 37 1 6.8410 -5.8322 -1.7455 38 1 5.1174 -7.2112 -4.1552 39 1 6.6622 -8.0509 -4.4324 40 1 6.1190 -7.7119 -2.7715 41 1 5.6709 -7.2326 -7.1481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663291172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:06 Heat of formation + Delta-G solvation = -30.316061 kcal Electronic energy + Delta-G solvation = -21615.801895 eV Core-core repulsion = 18304.131560 eV Total energy + Delta-G solvation = -3311.670334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.56368 -40.79486 -37.88287 -35.78487 -35.29305 -34.07401 -33.26132 -32.00718 -29.71660 -27.94210 -27.39552 -25.71005 -24.31009 -22.73405 -22.41136 -21.76981 -20.75355 -18.82742 -18.37396 -17.67236 -17.01569 -16.83001 -16.55464 -16.49374 -15.62929 -15.46778 -15.09898 -14.94300 -14.47975 -14.20887 -14.05709 -13.97276 -13.73459 -13.69241 -13.32759 -13.12381 -12.95334 -12.82944 -12.66912 -12.54100 -12.49847 -12.42880 -12.05672 -12.02251 -11.75981 -10.95790 -10.76326 -10.68691 -10.10804 -9.20811 -8.87584 -7.86293 -5.35969 0.73795 1.45447 1.46437 1.57030 1.57848 1.64097 2.01463 2.21613 2.51573 3.29524 3.48051 3.65477 3.87638 3.96689 4.01651 4.15995 4.22438 4.25279 4.33651 4.52717 4.65237 4.69245 4.74721 4.79651 4.83671 4.84993 4.93111 5.05374 5.05897 5.13692 5.19745 5.30856 5.31382 5.44945 5.62022 5.67172 5.71081 6.27358 6.29831 6.56844 7.11330 7.26619 7.82366 8.24574 9.17663 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.003245 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.556275 B = 8627.073714 C = 8924.022468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.035 4.035 3 C -0.225 4.225 4 C -0.209 4.209 5 C -0.016 4.016 6 C -0.020 4.020 7 H 0.162 0.838 8 C -0.139 4.139 9 C 0.504 3.496 10 O -0.590 6.590 11 N -0.703 5.703 12 C 0.116 3.884 13 C 0.147 3.853 14 N -0.616 5.616 15 C 0.174 3.826 16 C -0.265 4.265 17 H 0.078 0.922 18 C -0.057 4.057 19 N -0.941 5.941 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.289 1.289 23 H -0.297 1.297 24 O -0.190 6.190 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.420 0.580 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.077 0.923 38 H -0.004 1.004 39 H 0.022 0.978 40 H 0.037 0.963 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 13.729 19.791 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.244 4.244 4 C -0.228 4.228 5 C -0.066 4.066 6 C -0.041 4.041 7 H 0.179 0.821 8 C -0.196 4.196 9 C 0.291 3.709 10 O -0.470 6.470 11 N -0.357 5.357 12 C -0.012 4.012 13 C 0.020 3.980 14 N -0.338 5.338 15 C 0.029 3.971 16 C -0.395 4.395 17 H 0.096 0.904 18 C -0.252 4.252 19 N -0.587 5.587 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.216 1.216 23 H -0.224 1.224 24 O -0.087 6.087 25 H 0.089 0.911 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.188 0.812 29 H 0.189 0.811 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.258 0.742 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.015 0.985 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.496 13.382 19.089 23.573 hybrid contribution 0.246 0.010 -1.332 1.355 sum -3.250 13.393 17.757 22.477 Atomic orbital electron populations 1.20456 0.83107 1.04271 1.05067 1.23248 0.95667 0.84126 1.05436 1.21867 0.92537 1.00257 1.09722 1.21906 0.99470 0.93244 1.08146 1.22042 0.82942 0.94592 1.07054 1.20072 0.95223 0.94973 0.93855 0.82077 1.21831 1.03519 0.99494 0.94756 1.21246 0.81320 0.80752 0.87612 1.90734 1.37149 1.70086 1.49012 1.45812 1.27497 1.37047 1.25308 1.21933 1.00540 0.92462 0.86234 1.21159 0.94902 0.92168 0.89741 1.44204 1.62921 1.17272 1.09437 1.20603 0.94791 0.86029 0.95636 1.19658 1.12101 1.22688 0.85074 0.90408 1.25890 0.97689 1.00852 1.00747 1.70261 1.23795 1.40279 1.24382 0.85142 0.78343 0.77274 0.79326 1.18537 1.21551 1.22430 1.83967 1.17129 1.36299 1.71324 0.91147 0.87242 0.88658 0.81214 0.81071 0.93756 0.88838 0.88379 0.74243 0.95278 0.95432 0.91345 0.90468 0.98549 0.95885 0.94454 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 10.42 71.23 0.74 -0.48 16 2 C -0.03 -0.88 7.32 24.83 0.18 -0.70 16 3 C -0.23 -5.11 10.81 22.19 0.24 -4.88 16 4 C -0.21 -4.87 10.78 22.19 0.24 -4.63 16 5 C -0.02 -0.43 5.20 24.83 0.13 -0.30 16 6 C -0.02 -0.44 3.13 -12.29 -0.04 -0.47 16 7 H 0.16 2.17 8.10 -2.39 -0.02 2.15 16 8 C -0.14 -2.15 9.07 71.98 0.65 -1.50 16 9 C 0.50 16.15 7.15 87.66 0.63 16.77 16 10 O -0.59 -26.45 15.80 3.45 0.05 -26.40 16 11 N -0.70 -20.02 5.45 -463.06 -2.52 -22.54 16 12 C 0.12 4.56 6.00 86.38 0.52 5.08 16 13 C 0.15 5.50 5.82 86.38 0.50 6.00 16 14 N -0.62 -30.62 2.93 -726.91 -2.13 -32.75 16 15 C 0.17 8.70 9.01 127.77 1.15 9.85 16 16 C -0.27 -14.53 9.67 84.03 0.81 -13.72 16 17 H 0.08 4.07 7.84 -2.91 -0.02 4.04 16 18 C -0.06 -3.24 5.13 84.86 0.44 -2.81 16 19 N -0.94 -57.17 10.59 21.65 0.23 -56.94 16 20 Si 0.97 45.69 29.57 68.60 2.03 47.72 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 O -0.19 -6.00 10.35 3.99 0.04 -5.96 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.00 7.56 -2.39 -0.02 0.98 16 33 H 0.42 7.75 7.89 -92.70 -0.73 7.02 16 34 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 37 H 0.08 2.38 7.86 -2.39 -0.02 2.36 16 38 H 0.00 -0.22 7.42 -2.39 -0.02 -0.23 16 39 H 0.02 1.22 7.19 -2.38 -0.02 1.20 16 40 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -80.75 346.67 4.18 -76.57 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.28 Total: 12.08 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 6.19 Total: 8.22 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -4.42 Total: -112.23 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: 0.10 Total: -32.36 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -80.75 4.18 -76.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663291172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.257 kcal (2) G-P(sol) polarization free energy of solvation -80.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds