Wall clock time and date at job start Tue Mar 31 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35138 * 125.61929 * 2 1 4 4 C 1.40361 * 107.11443 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.64211 * 180.02562 * 4 3 2 6 6 C 1.36536 * 106.71175 * 0.02562 * 4 3 2 7 7 C 1.46659 * 125.98994 * 179.97438 * 6 4 3 8 8 O 1.21691 * 119.99904 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00300 * 180.02562 * 7 6 4 10 10 C 1.46497 * 120.00207 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47183 * 34.99982 * 10 9 7 12 12 C 1.52997 * 109.47065 * 275.00126 * 10 9 7 13 13 C 1.52996 * 109.47257 * 154.99863 * 10 9 7 14 14 N 1.46500 * 109.47193 * 305.00181 * 13 10 9 15 15 C 1.46501 * 120.00287 * 269.99742 * 14 13 10 16 16 C 1.36941 * 120.00189 * 90.00042 * 14 13 10 17 17 H 1.08002 * 119.99713 * 342.70996 * 16 14 13 18 18 C 1.38811 * 120.00163 * 162.99509 * 16 14 13 19 19 N 1.31614 * 119.99785 * 345.44715 * 18 16 14 20 20 Si 1.86799 * 119.99849 * 165.44858 * 18 16 14 21 21 H 1.48507 * 109.46851 * 90.00206 * 20 18 16 22 22 H 1.48498 * 109.46971 * 209.99488 * 20 18 16 23 23 H 1.48493 * 109.47288 * 329.99592 * 20 18 16 24 24 O 1.33929 * 125.61853 * 180.32996 * 2 1 3 25 25 H 1.08993 * 109.47361 * 89.99410 * 1 2 3 26 26 H 1.08998 * 109.46987 * 210.00435 * 1 2 3 27 27 H 1.09002 * 109.46949 * 329.99953 * 1 2 3 28 28 H 1.08004 * 126.43725 * 0.04168 * 3 2 1 29 29 H 1.09010 * 109.47071 * 269.97187 * 5 4 3 30 30 H 1.08998 * 109.47459 * 29.96814 * 5 4 3 31 31 H 1.09002 * 109.47243 * 149.97362 * 5 4 3 32 32 H 0.97005 * 119.99854 * 359.97438 * 9 7 6 33 33 H 1.08997 * 109.47347 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47002 * 299.99966 * 12 10 9 35 35 H 1.08999 * 109.47211 * 59.99896 * 12 10 9 36 36 H 1.08993 * 109.47164 * 184.99967 * 13 10 9 37 37 H 1.09001 * 109.46956 * 64.99614 * 13 10 9 38 38 H 1.09001 * 109.47358 * 265.06878 * 15 14 13 39 39 H 1.09004 * 109.46598 * 25.06686 * 15 14 13 40 40 H 1.08992 * 109.47326 * 145.05847 * 15 14 13 41 41 H 0.97007 * 120.00289 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8617 1.5143 -0.0003 6 6 3.5823 -0.7116 -0.0015 7 6 4.7414 -1.6102 -0.0029 8 8 5.8680 -1.1500 -0.0038 9 7 4.5589 -2.9455 -0.0043 10 6 5.7168 -3.8431 -0.0062 11 1 6.5202 -3.4010 0.5830 12 6 6.1957 -4.0545 -1.4438 13 6 5.3195 -5.1894 0.6022 14 7 4.7496 -4.9741 1.9346 15 6 5.6202 -4.9760 3.1128 16 6 3.4030 -4.7709 2.0787 17 1 2.8045 -4.4920 1.2240 18 6 2.8083 -4.9177 3.3243 19 7 3.4585 -5.5205 4.2970 20 14 1.0852 -4.2597 3.6200 21 1 0.0905 -5.3140 3.2967 22 1 0.9435 -3.8658 5.0447 23 1 0.8518 -3.0764 2.7537 24 8 2.2869 -1.0887 -0.0063 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9612 2.1261 0.0006 29 1 5.1599 1.7222 -1.0280 30 1 4.6513 2.4521 0.5137 31 1 5.6685 0.9914 0.5134 32 1 3.6609 -3.3123 -0.0039 33 1 7.0569 -4.7227 -1.4454 34 1 5.3923 -4.4966 -2.0331 35 1 6.4788 -3.0953 -1.8773 36 1 6.2005 -5.8260 0.6825 37 1 4.5792 -5.6722 -0.0358 38 1 5.6249 -5.9703 3.5595 39 1 6.6337 -4.7062 2.8160 40 1 5.2498 -4.2530 3.8394 41 1 3.0428 -5.6235 5.1674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669795021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:08 Heat of formation + Delta-G solvation = -6.828350 kcal Electronic energy + Delta-G solvation = -22910.007719 eV Core-core repulsion = 19599.355889 eV Total energy + Delta-G solvation = -3310.651831 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.50677 -39.10657 -36.43354 -34.31441 -33.69295 -32.39905 -31.34449 -30.14923 -27.83973 -26.83847 -26.16318 -25.62046 -22.40330 -21.35513 -21.12947 -19.87651 -19.38943 -17.84191 -16.58065 -16.30164 -15.66430 -15.06964 -15.02093 -14.26537 -13.92584 -13.75157 -13.53948 -13.16228 -13.08124 -12.93806 -12.83772 -12.83105 -12.48249 -12.25711 -12.15142 -11.94467 -11.60991 -11.47323 -11.05795 -10.87408 -10.81391 -10.41006 -10.29744 -10.02823 -9.86173 -9.60891 -9.47700 -8.60287 -8.52845 -8.13608 -6.81565 -5.73892 -3.15302 1.33371 2.46947 2.89388 3.35126 3.42363 3.44036 3.58940 3.76322 4.47704 4.69255 4.94458 5.09562 5.30080 5.33422 5.36959 5.47597 5.48440 5.59086 5.67229 5.72869 5.80366 5.84531 5.92837 5.98084 6.12746 6.19031 6.23687 6.29938 6.44185 6.45768 6.62216 6.76381 6.81738 7.01904 7.16880 7.44772 7.65908 7.80440 8.08242 8.34565 8.63694 9.21098 9.85393 10.32530 11.31126 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.007742 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.420923 B = 3615.931612 C = 5123.332049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 C -0.226 4.226 4 C -0.099 4.099 5 C -0.089 4.089 6 C -0.070 4.070 7 C 0.600 3.400 8 O -0.537 6.537 9 N -0.682 5.682 10 C 0.116 3.884 11 H 0.080 0.920 12 C -0.159 4.159 13 C 0.141 3.859 14 N -0.601 5.601 15 C 0.165 3.835 16 C -0.248 4.248 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.906 5.906 20 Si 0.897 3.103 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.278 1.278 24 O -0.155 6.155 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.407 0.593 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.027 0.973 39 H -0.004 1.004 40 H 0.047 0.953 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 9.786 -10.292 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.038 4.038 3 C -0.245 4.245 4 C -0.102 4.102 5 C -0.146 4.146 6 C -0.122 4.122 7 C 0.386 3.614 8 O -0.418 6.418 9 N -0.332 5.332 10 C 0.009 3.991 11 H 0.098 0.902 12 C -0.218 4.218 13 C 0.013 3.987 14 N -0.323 5.323 15 C 0.021 3.979 16 C -0.378 4.378 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.552 5.552 20 Si 0.727 3.273 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.204 1.204 24 O -0.050 6.050 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.169 0.831 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.244 0.756 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.014 0.986 40 H 0.066 0.934 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.240 9.696 -10.077 14.039 hybrid contribution -1.495 0.357 0.394 1.587 sum -2.735 10.054 -9.683 14.224 Atomic orbital electron populations 1.20383 0.84986 1.04499 1.03599 1.22699 0.94223 0.84279 1.02552 1.21375 0.91972 0.99412 1.11744 1.20527 0.96150 0.92276 1.01219 1.20359 0.94151 0.97686 1.02390 1.22052 0.82032 0.94201 1.13963 1.16510 0.85679 0.82028 0.77148 1.90769 1.22037 1.76222 1.52779 1.45885 1.11268 1.04574 1.71438 1.21976 0.88358 0.93267 0.95547 0.90177 1.22128 1.00980 1.01569 0.97093 1.21053 0.97639 0.91996 0.88025 1.43887 1.04427 1.83588 1.00410 1.20805 0.88366 1.00263 0.88499 1.19037 0.83778 1.40320 0.94643 0.91589 1.24870 0.97833 0.99781 0.97173 1.70101 1.37338 1.44446 1.03286 0.86359 0.84637 0.78932 0.77368 1.21476 1.21635 1.20376 1.84065 1.15989 1.34510 1.70463 0.89821 0.90049 0.89207 0.83127 0.91281 0.91932 0.89457 0.75573 0.91877 0.92822 0.92788 0.92725 0.92969 0.95495 0.98581 0.93389 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.41 36.00 0.37 -0.42 16 2 C 0.02 0.22 7.31 -35.41 -0.26 -0.04 16 3 C -0.23 -3.17 10.73 -39.89 -0.43 -3.59 16 4 C -0.10 -1.62 6.20 -104.44 -0.65 -2.26 16 5 C -0.09 -1.27 9.81 36.01 0.35 -0.91 16 6 C -0.07 -1.31 7.13 -36.80 -0.26 -1.57 16 7 C 0.60 11.93 7.75 -12.86 -0.10 11.83 16 8 O -0.54 -11.34 14.40 5.20 0.07 -11.27 16 9 N -0.68 -13.15 4.48 -55.13 -0.25 -13.39 16 10 C 0.12 2.11 2.88 -67.94 -0.20 1.91 16 11 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 12 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 13 C 0.14 2.77 5.30 -4.04 -0.02 2.75 16 14 N -0.60 -14.70 2.82 -181.12 -0.51 -15.21 16 15 C 0.17 4.13 8.97 59.85 0.54 4.67 16 16 C -0.25 -6.56 8.81 -15.06 -0.13 -6.69 16 17 H 0.07 1.67 6.40 -52.49 -0.34 1.33 16 18 C 0.00 0.04 5.09 -17.43 -0.09 -0.05 16 19 N -0.91 -26.36 10.45 55.49 0.58 -25.78 16 20 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 O -0.15 -2.78 10.40 5.00 0.05 -2.73 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.15 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.41 6.45 -51.93 -0.33 1.08 16 32 H 0.41 7.97 6.34 -40.82 -0.26 7.72 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 38 H 0.03 0.71 7.51 -51.93 -0.39 0.32 16 39 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 40 H 0.05 1.32 6.95 -51.93 -0.36 0.96 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -31.49 340.20 -6.74 -38.23 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.27 Total: 4.70 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.52 Total: 3.63 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.18 Total: -54.39 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.13 Total: -14.00 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.49 -6.74 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669795021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.402 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds