Wall clock time and date at job start Tue Mar 31 2020 01:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34174 * 125.43577 * 2 1 4 4 C 1.47024 * 105.95377 * 179.97438 * 3 2 1 5 5 C 1.47378 * 127.19304 * 179.97438 * 4 3 2 6 6 O 1.21621 * 119.99653 * 165.16955 * 5 4 3 7 7 N 1.34766 * 119.99914 * 345.17369 * 5 4 3 8 8 C 1.46500 * 120.00511 * 0.81302 * 7 5 4 9 9 C 1.46510 * 120.00118 * 180.81219 * 7 5 4 10 10 C 1.52996 * 109.46964 * 89.99894 * 9 7 5 11 11 C 1.52999 * 109.46900 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.47119 * 179.97438 * 11 10 9 13 13 C 1.46504 * 119.99639 * 89.99822 * 12 11 10 14 14 C 1.36927 * 120.00041 * 269.99842 * 12 11 10 15 15 H 1.08011 * 120.00077 * 26.80315 * 14 12 11 16 16 C 1.38815 * 119.99979 * 206.80450 * 14 12 11 17 17 N 1.31617 * 120.00196 * 9.99886 * 16 14 12 18 18 Si 1.86806 * 119.99750 * 189.99809 * 16 14 12 19 19 H 1.48496 * 109.47069 * 90.00150 * 18 16 14 20 20 H 1.48504 * 109.46672 * 209.99669 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99667 * 18 16 14 22 22 C 1.36417 * 105.61433 * 359.97438 * 4 3 2 23 23 O 1.33654 * 108.40061 * 0.02562 * 22 4 3 24 24 H 1.09004 * 109.46824 * 90.00190 * 1 2 3 25 25 H 1.09004 * 109.46997 * 209.99462 * 1 2 3 26 26 H 1.09000 * 109.47532 * 329.99796 * 1 2 3 27 27 H 1.07995 * 127.02395 * 359.70646 * 3 2 1 28 28 H 1.08994 * 109.47611 * 84.12708 * 8 7 5 29 29 H 1.08998 * 109.47693 * 204.13552 * 8 7 5 30 30 H 1.09005 * 109.46544 * 324.12822 * 8 7 5 31 31 H 1.08995 * 109.47015 * 210.00004 * 9 7 5 32 32 H 1.08999 * 109.46820 * 330.00084 * 9 7 5 33 33 H 1.09005 * 109.47241 * 299.99885 * 10 9 7 34 34 H 1.08994 * 109.47360 * 59.99955 * 10 9 7 35 35 H 1.09005 * 109.47203 * 299.99844 * 11 10 9 36 36 H 1.08999 * 109.47246 * 59.99968 * 11 10 9 37 37 H 1.09002 * 109.47136 * 87.75310 * 13 12 11 38 38 H 1.09006 * 109.46512 * 207.75088 * 13 12 11 39 39 H 1.08994 * 109.47169 * 327.74493 * 13 12 11 40 40 H 0.96992 * 120.00090 * 179.97438 * 17 16 14 41 41 H 1.08008 * 125.80199 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4125 0.0003 6 8 5.9698 0.8960 0.2705 7 7 4.8457 2.7253 -0.2992 8 6 3.5575 3.3514 -0.6072 9 6 6.0722 3.5263 -0.3169 10 6 6.6820 3.4943 -1.7197 11 6 7.9633 4.3304 -1.7380 12 7 8.5475 4.2993 -3.0812 13 6 8.1651 5.3105 -4.0699 14 6 9.4510 3.3251 -3.4124 15 1 9.4258 2.3708 -2.9072 16 6 10.3994 3.5641 -4.3975 17 7 10.5615 4.7802 -4.8739 18 14 11.4457 2.1594 -5.0470 19 1 10.7636 1.5287 -6.2054 20 1 12.7671 2.6839 -5.4761 21 1 11.6383 1.1492 -3.9757 22 6 3.5790 -0.7582 0.0015 23 8 2.2852 -1.0936 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9595 2.1229 -0.0044 28 1 3.0602 3.6346 0.3204 29 1 3.7218 4.2396 -1.2173 30 1 2.9321 2.6456 -1.1540 31 1 5.8378 4.5557 -0.0460 32 1 6.7847 3.1156 0.3984 33 1 6.9165 2.4648 -1.9906 34 1 5.9695 3.9050 -2.4351 35 1 7.7292 5.3599 -1.4670 36 1 8.6756 3.9193 -1.0228 37 1 8.8129 6.1812 -3.9684 38 1 8.2686 4.8955 -5.0726 39 1 7.1293 5.6068 -3.9045 40 1 11.2244 4.9472 -5.5619 41 1 4.4104 -1.4477 0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755036498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:54 Heat of formation + Delta-G solvation = 11.922303 kcal Electronic energy + Delta-G solvation = -21658.839965 eV Core-core repulsion = 18349.001223 eV Total energy + Delta-G solvation = -3309.838741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.78771 -39.55219 -36.22638 -35.32255 -33.58512 -32.45179 -31.81683 -30.05959 -27.43943 -26.65001 -25.99484 -25.55846 -23.26722 -21.96427 -20.97805 -20.13532 -18.85060 -17.48136 -16.71431 -16.57710 -16.45303 -15.88005 -15.19690 -14.71899 -14.42168 -14.02157 -13.59420 -13.49580 -13.45205 -13.37523 -13.16763 -12.99406 -12.78739 -12.55323 -12.12317 -11.70934 -11.67492 -11.19634 -10.87473 -10.77790 -10.68339 -10.36037 -10.11660 -9.97130 -9.84814 -9.78838 -9.65386 -8.84939 -8.56712 -8.39396 -6.59390 -5.66461 -3.14055 1.27758 1.80003 2.60669 3.05736 3.36216 3.44099 3.49766 3.52762 4.23860 4.56291 4.58560 4.72461 4.90050 5.03690 5.06055 5.11537 5.24861 5.29279 5.39677 5.48940 5.50495 5.53278 5.62074 5.82019 5.86224 6.05505 6.10039 6.17127 6.23767 6.53789 6.68819 6.82000 6.83969 6.92401 7.11234 7.44003 7.45272 7.75256 7.90204 8.26433 8.51886 9.33338 9.95740 10.46707 11.40105 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.003399 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.730789 B = 8235.043252 C = 8783.230618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.017 4.017 3 C -0.201 4.201 4 C -0.233 4.233 5 C 0.584 3.416 6 O -0.538 6.538 7 N -0.605 5.605 8 C 0.067 3.933 9 C 0.117 3.883 10 C -0.150 4.150 11 C 0.155 3.845 12 N -0.602 5.602 13 C 0.164 3.836 14 C -0.252 4.252 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.910 5.910 18 Si 0.904 3.096 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.046 3.954 23 O -0.176 6.176 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.169 0.831 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.020 0.980 38 H 0.049 0.951 39 H -0.008 1.008 40 H 0.252 0.748 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.432 -5.346 10.603 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.220 4.220 4 C -0.237 4.237 5 C 0.373 3.627 6 O -0.416 6.416 7 N -0.338 5.338 8 C -0.076 4.076 9 C -0.005 4.005 10 C -0.192 4.192 11 C 0.027 3.973 12 N -0.325 5.325 13 C 0.019 3.981 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.196 4.196 17 N -0.555 5.555 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.024 4.024 23 O -0.072 6.072 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.186 0.814 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.062 0.938 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -21.855 -5.790 10.605 24.972 hybrid contribution 0.687 -0.437 -0.565 0.991 sum -21.167 -6.227 10.040 24.241 Atomic orbital electron populations 1.20331 0.84824 1.04167 1.03712 1.22379 0.94155 0.83959 1.06021 1.23211 0.90780 0.99995 1.07965 1.21463 0.93943 0.94133 1.14181 1.17281 0.87064 0.81512 0.76842 1.90822 1.30205 1.71307 1.49297 1.47680 1.08705 1.08646 1.68729 1.22320 0.85528 0.99265 1.00468 1.21628 0.85176 0.94166 0.99561 1.22598 0.99494 1.02760 0.94317 1.20632 0.92315 0.95919 0.88422 1.43846 1.48558 1.32837 1.07256 1.20736 0.92049 0.92026 0.93254 1.19217 1.07154 0.92836 1.18983 0.91589 1.25107 0.97418 0.96135 1.00983 1.70045 1.36132 1.18383 1.30974 0.86252 0.79652 0.81696 0.78981 1.21533 1.21722 1.20360 1.24379 0.83548 0.95565 0.98952 1.83754 1.16647 1.35523 1.71257 0.89931 0.90456 0.89227 0.81387 0.92665 0.90775 0.90021 0.90846 0.89887 0.91811 0.92943 0.94790 0.93382 0.96134 0.93210 0.98915 0.93820 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.40 36.01 0.37 0.02 16 2 C -0.02 -0.15 7.28 -35.74 -0.26 -0.41 16 3 C -0.20 -1.95 8.69 -37.45 -0.33 -2.27 16 4 C -0.23 -2.99 6.01 -103.27 -0.62 -3.62 16 5 C 0.58 9.31 7.66 -12.55 -0.10 9.21 16 6 O -0.54 -10.58 16.53 5.26 0.09 -10.49 16 7 N -0.61 -8.53 2.87 -182.87 -0.53 -9.06 16 8 C 0.07 0.65 8.76 59.85 0.52 1.18 16 9 C 0.12 1.79 5.39 -4.04 -0.02 1.76 16 10 C -0.15 -2.83 5.86 -26.73 -0.16 -2.99 16 11 C 0.16 3.35 5.68 -4.04 -0.02 3.33 16 12 N -0.60 -16.00 2.91 -181.11 -0.53 -16.52 16 13 C 0.16 4.21 8.98 59.85 0.54 4.74 16 14 C -0.25 -7.33 9.62 -15.06 -0.14 -7.48 16 15 H 0.07 1.92 7.85 -52.48 -0.41 1.51 16 16 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 17 N -0.91 -27.52 10.83 55.49 0.60 -26.92 16 18 Si 0.90 22.83 29.57 -169.99 -5.03 17.81 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.05 0.52 11.93 30.08 0.36 0.88 16 23 O -0.18 -1.86 10.52 7.63 0.08 -1.78 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.17 1.21 5.10 -52.49 -0.27 0.95 16 28 H 0.05 0.42 7.53 -51.93 -0.39 0.03 16 29 H 0.07 0.67 8.03 -51.93 -0.42 0.26 16 30 H 0.08 0.74 5.04 -51.93 -0.26 0.48 16 31 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.08 1.38 7.41 -51.93 -0.38 1.00 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 36 H 0.05 1.06 8.04 -51.93 -0.42 0.65 16 37 H 0.02 0.55 7.69 -51.93 -0.40 0.16 16 38 H 0.05 1.37 7.03 -51.93 -0.36 1.01 16 39 H -0.01 -0.17 8.09 -51.93 -0.42 -0.59 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.22 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -35.42 340.95 -6.36 -41.78 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -6.25 Total: -4.26 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 0.06 Total: 4.32 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.45 Total: -52.50 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.17 Total: -12.28 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.42 -6.36 -41.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755036498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.701 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds