Wall clock time and date at job start Tue Mar 31 2020 01:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34174 * 125.43577 * 2 1 4 4 C 1.47024 * 105.95377 * 179.97438 * 3 2 1 5 5 C 1.47378 * 127.19304 * 179.97438 * 4 3 2 6 6 O 1.21621 * 119.99653 * 165.16955 * 5 4 3 7 7 N 1.34766 * 119.99914 * 345.17369 * 5 4 3 8 8 C 1.46500 * 120.00511 * 0.81302 * 7 5 4 9 9 C 1.46510 * 120.00118 * 180.81219 * 7 5 4 10 10 C 1.52996 * 109.46964 * 89.99894 * 9 7 5 11 11 C 1.52999 * 109.46900 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.47119 * 179.97438 * 11 10 9 13 13 C 1.46504 * 119.99639 * 89.99822 * 12 11 10 14 14 C 1.36927 * 120.00041 * 269.99842 * 12 11 10 15 15 H 1.08011 * 120.00077 * 26.80315 * 14 12 11 16 16 C 1.38815 * 119.99979 * 206.80450 * 14 12 11 17 17 N 1.31617 * 120.00196 * 9.99886 * 16 14 12 18 18 Si 1.86806 * 119.99750 * 189.99809 * 16 14 12 19 19 H 1.48496 * 109.47069 * 90.00150 * 18 16 14 20 20 H 1.48504 * 109.46672 * 209.99669 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99667 * 18 16 14 22 22 C 1.36417 * 105.61433 * 359.97438 * 4 3 2 23 23 O 1.33654 * 108.40061 * 0.02562 * 22 4 3 24 24 H 1.09004 * 109.46824 * 90.00190 * 1 2 3 25 25 H 1.09004 * 109.46997 * 209.99462 * 1 2 3 26 26 H 1.09000 * 109.47532 * 329.99796 * 1 2 3 27 27 H 1.07995 * 127.02395 * 359.70646 * 3 2 1 28 28 H 1.08994 * 109.47611 * 84.12708 * 8 7 5 29 29 H 1.08998 * 109.47693 * 204.13552 * 8 7 5 30 30 H 1.09005 * 109.46544 * 324.12822 * 8 7 5 31 31 H 1.08995 * 109.47015 * 210.00004 * 9 7 5 32 32 H 1.08999 * 109.46820 * 330.00084 * 9 7 5 33 33 H 1.09005 * 109.47241 * 299.99885 * 10 9 7 34 34 H 1.08994 * 109.47360 * 59.99955 * 10 9 7 35 35 H 1.09005 * 109.47203 * 299.99844 * 11 10 9 36 36 H 1.08999 * 109.47246 * 59.99968 * 11 10 9 37 37 H 1.09002 * 109.47136 * 87.75310 * 13 12 11 38 38 H 1.09006 * 109.46512 * 207.75088 * 13 12 11 39 39 H 1.08994 * 109.47169 * 327.74493 * 13 12 11 40 40 H 0.96992 * 120.00090 * 179.97438 * 17 16 14 41 41 H 1.08008 * 125.80199 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4125 0.0003 6 8 5.9698 0.8960 0.2705 7 7 4.8457 2.7253 -0.2992 8 6 3.5575 3.3514 -0.6072 9 6 6.0722 3.5263 -0.3169 10 6 6.6820 3.4943 -1.7197 11 6 7.9633 4.3304 -1.7380 12 7 8.5475 4.2993 -3.0812 13 6 8.1651 5.3105 -4.0699 14 6 9.4510 3.3251 -3.4124 15 1 9.4258 2.3708 -2.9072 16 6 10.3994 3.5641 -4.3975 17 7 10.5615 4.7802 -4.8739 18 14 11.4457 2.1594 -5.0470 19 1 10.7636 1.5287 -6.2054 20 1 12.7671 2.6839 -5.4761 21 1 11.6383 1.1492 -3.9757 22 6 3.5790 -0.7582 0.0015 23 8 2.2852 -1.0936 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9595 2.1229 -0.0044 28 1 3.0602 3.6346 0.3204 29 1 3.7218 4.2396 -1.2173 30 1 2.9321 2.6456 -1.1540 31 1 5.8378 4.5557 -0.0460 32 1 6.7847 3.1156 0.3984 33 1 6.9165 2.4648 -1.9906 34 1 5.9695 3.9050 -2.4351 35 1 7.7292 5.3599 -1.4670 36 1 8.6756 3.9193 -1.0228 37 1 8.8129 6.1812 -3.9684 38 1 8.2686 4.8955 -5.0726 39 1 7.1293 5.6068 -3.9045 40 1 11.2244 4.9472 -5.5619 41 1 4.4104 -1.4477 0.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755036498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:53 Heat of formation + Delta-G solvation = -10.852094 kcal Electronic energy + Delta-G solvation = -21659.827537 eV Core-core repulsion = 18349.001223 eV Total energy + Delta-G solvation = -3310.826313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.58619 -40.73038 -37.94217 -36.78699 -34.65653 -33.75127 -32.89560 -31.77860 -28.36699 -27.96288 -27.48715 -27.05269 -24.74157 -23.14182 -22.16765 -21.77131 -19.78144 -18.77434 -18.38210 -17.59898 -17.31797 -17.21804 -16.71497 -16.24181 -15.85733 -15.43601 -15.00305 -14.67150 -14.60785 -14.25140 -14.17934 -14.07031 -13.86475 -13.70828 -13.36220 -13.01591 -12.82544 -12.74818 -12.60148 -12.53218 -12.40716 -12.21661 -12.13179 -11.90946 -11.42943 -11.13747 -10.76142 -10.66139 -9.81733 -9.45447 -8.72261 -7.88120 -5.38723 0.34224 1.05331 1.42188 1.42893 1.52970 1.82272 2.03639 2.28097 2.47860 3.26002 3.47777 3.67396 3.73172 3.98314 4.06424 4.25369 4.33495 4.36992 4.47497 4.52575 4.60430 4.67813 4.74076 4.78166 4.81007 4.86689 4.89400 4.91214 4.92653 5.11942 5.23694 5.26217 5.44356 5.48270 5.56816 5.59760 5.66350 6.03067 6.33221 6.36283 7.10051 7.13902 7.85562 8.29177 9.16031 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.003399 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.730789 B = 8235.043252 C = 8783.230618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.259 4.259 5 C 0.574 3.426 6 O -0.592 6.592 7 N -0.605 5.605 8 C 0.059 3.941 9 C 0.125 3.875 10 C -0.129 4.129 11 C 0.153 3.847 12 N -0.622 5.622 13 C 0.177 3.823 14 C -0.267 4.267 15 H 0.056 0.944 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.040 3.960 23 O -0.181 6.181 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.195 0.805 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.022 0.978 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.000 1.000 38 H 0.021 0.979 39 H 0.031 0.969 40 H 0.250 0.750 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.170 -4.941 11.084 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.222 4.222 4 C -0.263 4.263 5 C 0.365 3.635 6 O -0.475 6.475 7 N -0.336 5.336 8 C -0.082 4.082 9 C 0.002 3.998 10 C -0.170 4.170 11 C 0.026 3.974 12 N -0.346 5.346 13 C 0.032 3.968 14 C -0.397 4.397 15 H 0.074 0.926 16 C -0.244 4.244 17 N -0.583 5.583 18 Si 0.795 3.205 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.030 4.030 23 O -0.077 6.077 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.212 0.788 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.018 0.982 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -24.658 -5.366 11.103 27.570 hybrid contribution 1.440 -0.554 -0.677 1.686 sum -23.218 -5.921 10.425 26.130 Atomic orbital electron populations 1.20562 0.81689 1.05685 1.05007 1.23212 0.95784 0.83156 1.04149 1.23451 0.88914 1.01560 1.08254 1.21433 0.94275 0.94548 1.16089 1.17814 0.87386 0.82211 0.76069 1.90781 1.32305 1.72454 1.51919 1.47778 1.09820 1.08183 1.67772 1.22642 0.83602 0.99587 1.02339 1.21455 0.85643 0.96239 0.96497 1.22280 0.98400 0.99475 0.96871 1.20790 0.92821 0.97863 0.85878 1.44121 1.48731 1.32479 1.09255 1.20523 0.93716 0.90765 0.91770 1.19405 1.07820 0.93293 1.19187 0.92626 1.25842 0.98743 0.98510 1.01342 1.70185 1.36730 1.19971 1.31372 0.85269 0.77964 0.78918 0.78325 1.21013 1.21353 1.19889 1.24585 0.84296 0.95585 0.98579 1.83781 1.16319 1.36472 1.71083 0.88595 0.89711 0.86950 0.78783 0.89774 0.89541 0.89178 0.87048 0.91856 0.95952 0.92161 0.92001 0.94755 0.98155 0.96015 0.95048 0.94033 0.75981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.40 71.24 0.74 0.29 16 2 C -0.01 -0.23 7.28 24.76 0.18 -0.05 16 3 C -0.20 -3.45 8.69 23.65 0.21 -3.24 16 4 C -0.26 -6.53 6.01 -18.99 -0.11 -6.64 16 5 C 0.57 18.47 7.66 86.65 0.66 19.14 16 6 O -0.59 -24.45 16.53 -4.10 -0.07 -24.51 16 7 N -0.60 -16.25 2.87 -850.72 -2.44 -18.69 16 8 C 0.06 0.96 8.76 127.77 1.12 2.08 16 9 C 0.12 3.66 5.39 86.38 0.47 4.13 16 10 C -0.13 -4.81 5.86 30.59 0.18 -4.63 16 11 C 0.15 6.54 5.68 86.38 0.49 7.03 16 12 N -0.62 -33.28 2.91 -726.90 -2.12 -35.40 16 13 C 0.18 9.05 8.98 127.77 1.15 10.20 16 14 C -0.27 -15.82 9.62 84.04 0.81 -15.01 16 15 H 0.06 3.34 7.85 -2.91 -0.02 3.32 16 16 C -0.05 -2.90 5.10 84.86 0.43 -2.47 16 17 N -0.94 -57.42 10.83 21.65 0.23 -57.18 16 18 Si 0.97 47.62 29.57 68.60 2.03 49.65 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 22 C 0.04 0.92 11.93 67.39 0.80 1.72 16 23 O -0.18 -3.61 10.52 4.40 0.05 -3.57 16 24 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 25 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.20 2.05 5.10 -2.91 -0.01 2.03 16 28 H 0.08 0.92 7.53 -2.39 -0.02 0.90 16 29 H 0.09 1.22 8.03 -2.39 -0.02 1.20 16 30 H 0.09 1.33 5.04 -2.38 -0.01 1.32 16 31 H 0.11 2.45 8.07 -2.39 -0.02 2.43 16 32 H 0.06 2.13 7.41 -2.39 -0.02 2.11 16 33 H 0.02 0.99 8.14 -2.38 -0.02 0.98 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.30 8.07 -2.38 -0.02 2.28 16 36 H 0.03 1.54 8.04 -2.39 -0.02 1.52 16 37 H 0.00 0.01 7.69 -2.39 -0.02 -0.01 16 38 H 0.02 1.19 7.03 -2.38 -0.02 1.17 16 39 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.22 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -79.41 340.95 5.82 -73.59 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.01 Total: 3.56 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 7.12 Total: 12.55 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -4.33 Total: -111.27 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.02 Total: -28.08 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -79.41 5.82 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755036498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.742 kcal (2) G-P(sol) polarization free energy of solvation -79.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds