Wall clock time and date at job start Tue Mar 31 2020 01:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.53005 * 109.46928 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46604 * 180.02562 * 4 3 2 6 6 C 1.34221 * 125.74423 * 125.33627 * 5 4 3 7 7 C 1.38117 * 107.41058 * 180.11544 * 6 5 4 8 8 C 1.47286 * 126.42854 * 179.83495 * 7 6 5 9 9 O 1.21530 * 120.00193 * 179.41971 * 8 7 6 10 10 O 1.34754 * 119.99971 * 359.69013 * 8 7 6 11 11 C 1.45198 * 117.00246 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47372 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47080 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00330 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99886 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00106 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47275 * 120.00467 * 17 15 13 20 20 H 1.48502 * 109.47065 * 240.00086 * 17 15 13 21 21 C 1.41350 * 107.14620 * 359.57784 * 7 6 5 22 22 C 1.50701 * 125.99311 * 180.28365 * 21 7 6 23 23 N 1.30425 * 108.00767 * 0.25820 * 21 7 6 24 24 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47216 * 299.99732 * 1 2 3 26 26 H 1.08996 * 109.46847 * 60.00294 * 1 2 3 27 27 H 1.08999 * 109.47216 * 240.00268 * 2 1 3 28 28 H 1.08995 * 109.47291 * 120.00002 * 2 1 3 29 29 H 1.08999 * 109.46953 * 60.00107 * 3 2 1 30 30 H 1.08997 * 109.46633 * 300.00128 * 3 2 1 31 31 H 1.09004 * 109.46793 * 60.00088 * 4 3 2 32 32 H 1.08996 * 109.46847 * 299.99706 * 4 3 2 33 33 H 1.08009 * 126.29296 * 359.96096 * 6 5 4 34 34 H 1.09011 * 109.47161 * 300.00458 * 11 10 8 35 35 H 1.09003 * 109.47123 * 59.99778 * 11 10 8 36 36 H 1.08994 * 109.47099 * 299.99833 * 12 11 10 37 37 H 1.08998 * 109.47020 * 59.99843 * 12 11 10 38 38 H 0.97005 * 120.00415 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.46952 * 89.99682 * 22 21 7 40 40 H 1.08999 * 109.46467 * 209.99916 * 22 21 7 41 41 H 1.09000 * 109.46837 * 329.99611 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.9132 3.3528 0.8905 7 6 5.1113 4.6735 0.5381 8 6 5.9720 5.6449 1.2345 9 8 6.0690 6.7813 0.8147 10 8 6.6560 5.2721 2.3340 11 6 7.4840 6.2818 2.9692 12 6 8.1780 5.6773 4.1914 13 6 9.0378 6.7251 4.8502 14 1 9.0849 7.7223 4.4381 15 6 9.7644 6.4106 5.9790 16 7 9.7075 5.1962 6.4805 17 14 10.8295 7.7096 6.7960 18 1 10.7203 8.9847 6.0429 19 1 10.3707 7.9193 8.1927 20 1 12.2440 7.2575 6.8024 21 6 4.3379 4.9164 -0.6198 22 6 4.2468 6.2224 -1.3662 23 7 3.7173 3.8117 -0.9292 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9289 0.8909 33 1 5.3617 2.8406 1.7290 34 1 8.2353 6.6332 2.2618 35 1 6.8601 7.1190 3.2822 36 1 7.4270 5.3257 4.8988 37 1 8.8020 4.8403 3.8779 38 1 10.2189 4.9748 7.2745 39 1 5.0184 6.2559 -2.1352 40 1 3.2651 6.3066 -1.8324 41 1 4.3908 7.0491 -0.6706 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186011625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:57 Heat of formation + Delta-G solvation = -42.907672 kcal Electronic energy + Delta-G solvation = -20952.762664 eV Core-core repulsion = 17640.546316 eV Total energy + Delta-G solvation = -3312.216347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49254 -39.35174 -36.47574 -35.82052 -33.52504 -33.31376 -31.08237 -30.22402 -29.70141 -27.60496 -25.21986 -24.16743 -22.56170 -21.63997 -21.10223 -20.44407 -19.42909 -17.49927 -16.73208 -16.26435 -15.99301 -15.82870 -15.39338 -15.16556 -14.48604 -14.31591 -14.11890 -13.75515 -13.21546 -13.01464 -12.88217 -12.70671 -12.63897 -12.33875 -12.02762 -11.85292 -11.71036 -11.51766 -11.19214 -11.11930 -10.99416 -10.83690 -10.71976 -10.65191 -10.06911 -9.57313 -9.55719 -9.42867 -9.25721 -8.73230 -8.43092 -6.09459 -4.13078 1.43799 2.09130 2.15471 3.28493 3.34215 3.37993 3.46329 3.49306 4.04598 4.37556 4.41423 4.53367 4.61037 4.68084 4.77546 4.91293 5.03110 5.14977 5.27478 5.33160 5.33384 5.45334 5.48128 5.61767 5.68697 5.70329 5.75293 5.87577 5.91871 5.97340 6.17094 6.19437 6.47474 6.68867 6.71353 7.11054 7.50717 7.59675 7.65310 7.89652 8.24568 8.42273 8.92909 9.51261 11.02228 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002940 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.424384 B = 9522.555819 C =10607.060195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.129 3.871 5 N -0.361 5.361 6 C 0.129 3.871 7 C -0.275 4.275 8 C 0.535 3.465 9 O -0.522 6.522 10 O -0.359 6.359 11 C 0.078 3.922 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.134 3.866 22 C -0.078 4.078 23 N -0.303 5.303 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.193 0.807 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.868 -10.416 -14.030 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.171 4.171 4 C 0.009 3.991 5 N -0.139 5.139 6 C -0.023 4.023 7 C -0.288 4.288 8 C 0.380 3.620 9 O -0.413 6.413 10 O -0.275 6.275 11 C 0.005 3.995 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.033 4.033 22 C -0.136 4.136 23 N -0.125 5.125 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.210 0.790 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.600 -10.906 -14.785 24.761 hybrid contribution 1.285 0.959 1.207 2.007 sum -15.315 -9.947 -13.579 22.756 Atomic orbital electron populations 1.21749 0.95292 1.01817 1.02121 1.21464 0.96536 0.95585 1.02428 1.21911 0.93096 0.97988 1.04079 1.21928 0.95975 0.76814 1.04394 1.48470 1.34202 1.10510 1.20688 1.23376 0.90986 0.93695 0.94231 1.19504 1.11710 0.94130 1.03459 1.19961 0.77459 0.85771 0.78772 1.90756 1.63466 1.20922 1.66158 1.86550 1.56275 1.45543 1.39133 1.23597 0.91314 0.89148 0.95434 1.19167 0.95196 0.97147 0.89761 1.21039 1.26885 0.97191 1.11082 0.92165 1.24983 0.96762 0.95602 0.96870 1.69979 1.41551 1.18905 1.22570 0.86424 0.80044 0.81653 0.79253 1.19559 1.20864 1.20861 1.22473 0.92563 0.95165 0.93113 1.20359 1.02521 0.90803 0.99962 1.77109 1.24998 0.96618 1.13744 0.92499 0.92582 0.92579 0.91588 0.91560 0.91147 0.90232 0.89321 0.88047 0.78974 0.92341 0.92345 0.95421 0.95425 0.92818 0.90142 0.91036 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.64 5.93 -26.73 -0.16 -0.80 16 3 C -0.13 -0.93 5.39 -26.73 -0.14 -1.07 16 4 C 0.13 0.95 6.49 -4.04 -0.03 0.92 16 5 N -0.36 -4.15 3.65 -60.79 -0.22 -4.38 16 6 C 0.13 1.63 11.28 -16.55 -0.19 1.44 16 7 C -0.28 -4.34 6.13 -105.08 -0.64 -4.98 16 8 C 0.54 10.15 7.95 34.41 0.27 10.43 16 9 O -0.52 -10.77 14.71 -19.29 -0.28 -11.06 16 10 O -0.36 -7.36 10.05 -40.64 -0.41 -7.77 16 11 C 0.08 1.76 5.41 37.16 0.20 1.96 16 12 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 13 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.13 1.96 7.27 -82.01 -0.60 1.36 16 22 C -0.08 -0.97 9.92 36.01 0.36 -0.61 16 23 N -0.30 -4.14 12.33 33.90 0.42 -3.72 16 24 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.51 8.06 -51.93 -0.42 0.09 16 33 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 34 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.32 6.56 -51.93 -0.34 0.98 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -32.91 353.20 -7.21 -40.12 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -6.64 Total: -4.51 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.12 Total: -4.81 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.93 Total: -33.74 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.69 Total: -18.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.91 -7.21 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186011625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.784 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds