Wall clock time and date at job start Tue Mar 31 2020 01:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.53005 * 109.46928 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46604 * 180.02562 * 4 3 2 6 6 C 1.34221 * 125.74423 * 125.33627 * 5 4 3 7 7 C 1.38117 * 107.41058 * 180.11544 * 6 5 4 8 8 C 1.47286 * 126.42854 * 179.83495 * 7 6 5 9 9 O 1.21530 * 120.00193 * 179.41971 * 8 7 6 10 10 O 1.34754 * 119.99971 * 359.69013 * 8 7 6 11 11 C 1.45198 * 117.00246 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47372 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47080 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00330 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99886 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00106 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47298 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47275 * 120.00467 * 17 15 13 20 20 H 1.48502 * 109.47065 * 240.00086 * 17 15 13 21 21 C 1.41350 * 107.14620 * 359.57784 * 7 6 5 22 22 C 1.50701 * 125.99311 * 180.28365 * 21 7 6 23 23 N 1.30425 * 108.00767 * 0.25820 * 21 7 6 24 24 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47216 * 299.99732 * 1 2 3 26 26 H 1.08996 * 109.46847 * 60.00294 * 1 2 3 27 27 H 1.08999 * 109.47216 * 240.00268 * 2 1 3 28 28 H 1.08995 * 109.47291 * 120.00002 * 2 1 3 29 29 H 1.08999 * 109.46953 * 60.00107 * 3 2 1 30 30 H 1.08997 * 109.46633 * 300.00128 * 3 2 1 31 31 H 1.09004 * 109.46793 * 60.00088 * 4 3 2 32 32 H 1.08996 * 109.46847 * 299.99706 * 4 3 2 33 33 H 1.08009 * 126.29296 * 359.96096 * 6 5 4 34 34 H 1.09011 * 109.47161 * 300.00458 * 11 10 8 35 35 H 1.09003 * 109.47123 * 59.99778 * 11 10 8 36 36 H 1.08994 * 109.47099 * 299.99833 * 12 11 10 37 37 H 1.08998 * 109.47020 * 59.99843 * 12 11 10 38 38 H 0.97005 * 120.00415 * 179.97438 * 16 15 13 39 39 H 1.08994 * 109.46952 * 89.99682 * 22 21 7 40 40 H 1.08999 * 109.46467 * 209.99916 * 22 21 7 41 41 H 1.09000 * 109.46837 * 329.99611 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0583 2.8238 0.0013 6 6 4.9132 3.3528 0.8905 7 6 5.1113 4.6735 0.5381 8 6 5.9720 5.6449 1.2345 9 8 6.0690 6.7813 0.8147 10 8 6.6560 5.2721 2.3340 11 6 7.4840 6.2818 2.9692 12 6 8.1780 5.6773 4.1914 13 6 9.0378 6.7251 4.8502 14 1 9.0849 7.7223 4.4381 15 6 9.7644 6.4106 5.9790 16 7 9.7075 5.1962 6.4805 17 14 10.8295 7.7096 6.7960 18 1 10.7203 8.9847 6.0429 19 1 10.3707 7.9193 8.1927 20 1 12.2440 7.2575 6.8024 21 6 4.3379 4.9164 -0.6198 22 6 4.2468 6.2224 -1.3662 23 7 3.7173 3.8117 -0.9292 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8892 32 1 3.9330 0.9289 0.8909 33 1 5.3617 2.8406 1.7290 34 1 8.2353 6.6332 2.2618 35 1 6.8601 7.1190 3.2822 36 1 7.4270 5.3257 4.8988 37 1 8.8020 4.8403 3.8779 38 1 10.2189 4.9748 7.2745 39 1 5.0184 6.2559 -2.1352 40 1 3.2651 6.3066 -1.8324 41 1 4.3908 7.0491 -0.6706 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186011625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:57 Heat of formation + Delta-G solvation = -61.117200 kcal Electronic energy + Delta-G solvation = -20953.552288 eV Core-core repulsion = 17640.546316 eV Total energy + Delta-G solvation = -3313.005972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.55622 -40.88809 -37.59476 -36.94269 -35.41812 -34.34828 -32.56961 -31.62299 -30.74246 -28.50193 -27.08521 -25.20078 -23.72117 -22.82062 -22.14374 -21.83156 -20.52950 -18.95506 -18.29914 -17.72973 -17.48278 -16.88327 -16.68538 -16.38797 -16.04354 -15.30862 -15.00630 -14.63417 -14.43684 -14.40489 -14.28225 -13.97890 -13.64207 -13.36200 -13.12644 -13.09818 -12.91243 -12.58162 -12.55508 -12.47289 -12.30504 -11.99823 -11.91946 -11.79882 -11.50844 -11.44460 -11.41421 -11.21539 -10.59805 -10.42985 -9.82961 -8.25749 -6.38006 0.30710 0.93735 1.25692 1.42582 1.42653 1.56468 1.91076 2.13667 2.42429 3.08899 3.20714 3.68171 3.82072 3.85338 3.99429 4.14691 4.18863 4.27976 4.34626 4.35602 4.40969 4.45565 4.60707 4.73230 4.74272 4.76595 4.88501 4.91671 4.97044 5.01419 5.22884 5.28316 5.31124 5.42371 5.44132 5.50634 5.62038 5.77977 5.80942 6.09526 6.45082 6.75020 6.87901 7.31505 8.87101 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002940 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.424384 B = 9522.555819 C =10607.060195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.119 3.881 5 N -0.350 5.350 6 C 0.146 3.854 7 C -0.311 4.311 8 C 0.535 3.465 9 O -0.546 6.546 10 O -0.362 6.362 11 C 0.093 3.907 12 C 0.032 3.968 13 C -0.548 4.548 14 H 0.064 0.936 15 C 0.007 3.993 16 N -0.927 5.927 17 Si 0.972 3.028 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.126 3.874 22 C -0.076 4.076 23 N -0.312 5.312 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.219 0.781 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.054 -11.265 -14.237 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.164 4.164 4 C 0.000 4.000 5 N -0.126 5.126 6 C -0.008 4.008 7 C -0.324 4.324 8 C 0.382 3.618 9 O -0.438 6.438 10 O -0.278 6.278 11 C 0.020 3.980 12 C -0.005 4.005 13 C -0.586 4.586 14 H 0.082 0.918 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.796 3.204 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.041 4.041 22 C -0.134 4.134 23 N -0.134 5.134 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.235 0.765 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.818 -11.779 -15.024 25.442 hybrid contribution 1.240 1.083 1.218 2.048 sum -15.578 -10.696 -13.806 23.403 Atomic orbital electron populations 1.21773 0.95598 1.02231 1.01647 1.21440 0.96222 0.94336 1.03464 1.21834 0.92858 0.98990 1.02728 1.22407 0.96143 0.74747 1.06700 1.48865 1.32946 1.11427 1.19383 1.23707 0.90051 0.92716 0.94325 1.19454 1.13159 0.95008 1.04770 1.20457 0.77140 0.86240 0.77982 1.90736 1.64374 1.22072 1.66598 1.86528 1.56462 1.44767 1.40085 1.23139 0.91479 0.89095 0.94303 1.18971 0.94454 0.96361 0.90692 1.21412 1.27622 0.97760 1.11816 0.91819 1.25932 0.98010 0.97897 0.97396 1.70088 1.42435 1.20890 1.23158 0.85295 0.78097 0.78838 0.78195 1.18734 1.20058 1.20048 1.22742 0.92341 0.96062 0.92956 1.20367 1.03965 0.89465 0.99632 1.77088 1.25023 0.96790 1.14506 0.91645 0.93107 0.93071 0.90635 0.90391 0.92240 0.91875 0.87737 0.85060 0.76468 0.92374 0.92381 0.97343 0.97336 0.92350 0.89360 0.89043 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.91 71.98 0.71 -0.73 16 2 C -0.12 -0.95 5.93 30.60 0.18 -0.76 16 3 C -0.13 -1.53 5.39 30.60 0.16 -1.36 16 4 C 0.12 1.40 6.49 86.38 0.56 1.96 16 5 N -0.35 -7.34 3.65 -346.25 -1.26 -8.60 16 6 C 0.15 3.45 11.28 84.30 0.95 4.40 16 7 C -0.31 -9.66 6.13 -20.16 -0.12 -9.79 16 8 C 0.53 20.47 7.95 70.20 0.56 21.02 16 9 O -0.55 -22.92 14.71 19.74 0.29 -22.63 16 10 O -0.36 -14.99 10.05 -56.65 -0.57 -15.56 16 11 C 0.09 4.28 5.41 71.98 0.39 4.67 16 12 C 0.03 1.74 5.35 29.85 0.16 1.90 16 13 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 14 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 15 C 0.01 0.37 5.46 84.66 0.46 0.83 16 16 N -0.93 -55.12 13.29 21.45 0.28 -54.84 16 17 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 21 C 0.13 3.60 7.27 43.53 0.32 3.92 16 22 C -0.08 -1.86 9.92 71.24 0.71 -1.16 16 23 N -0.31 -8.13 12.33 -46.65 -0.58 -8.71 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.13 0.82 8.06 -2.39 -0.02 0.80 16 33 H 0.22 3.91 8.06 -2.91 -0.02 3.88 16 34 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 39 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 2.21 6.56 -2.39 -0.02 2.20 16 Total: -1.00 -70.88 353.20 6.47 -64.41 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.00 Total: 6.27 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.27 Total: -6.05 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.55 Total: -72.15 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.28 Total: -38.19 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -70.88 6.47 -64.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186011625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.297 kcal (2) G-P(sol) polarization free energy of solvation -70.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds