Wall clock time and date at job start Tue Mar 31 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21498 * 120.00159 * 359.97438 * 14 13 3 16 16 C 1.48338 * 120.00042 * 179.97438 * 14 13 3 17 17 C 1.42277 * 126.93532 * 179.97438 * 16 14 13 18 18 C 1.35316 * 103.91584 * 180.02562 * 17 16 14 19 19 C 1.50698 * 126.66110 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47515 * 59.99654 * 19 18 17 21 21 C 1.52999 * 109.47232 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.46924 * 299.99449 * 19 18 17 23 23 O 1.34013 * 106.67092 * 0.02562 * 18 17 16 24 24 N 1.20904 * 111.84839 * 359.70688 * 23 18 17 25 25 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 28 28 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 29 29 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 30 30 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 32 32 H 1.07999 * 128.03911 * 0.02562 * 17 16 14 33 33 H 1.09000 * 109.47033 * 59.99947 * 20 19 18 34 34 H 1.08999 * 109.47117 * 180.02562 * 20 19 18 35 35 H 1.08996 * 109.46911 * 300.00237 * 20 19 18 36 36 H 1.09006 * 109.46885 * 59.99669 * 21 19 18 37 37 H 1.08999 * 109.47272 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.46928 * 299.99815 * 21 19 18 39 39 H 1.09006 * 109.46849 * 60.00888 * 22 19 18 40 40 H 1.08999 * 109.47281 * 180.02562 * 22 19 18 41 41 H 1.08993 * 109.47313 * 300.00208 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3380 2.6317 0.4495 16 6 0.0587 3.3215 2.6508 17 6 -1.1779 3.9623 2.9413 18 6 -1.0286 4.3958 4.2144 19 6 -2.0451 5.1486 5.0336 20 6 -3.3111 4.3019 5.1791 21 6 -1.4667 5.4425 6.4193 22 6 -2.3895 6.4652 4.3345 23 8 0.1987 4.0256 4.6051 24 7 0.7871 3.4283 3.7341 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8033 0.3145 -3.1314 31 1 2.2841 2.1188 1.9977 32 1 -2.0362 4.0762 2.2957 33 1 -3.0657 3.3639 5.6772 34 1 -4.0464 4.8466 5.7713 35 1 -3.7233 4.0921 4.1921 36 1 -0.5646 6.0456 6.3160 37 1 -2.2017 5.9874 7.0117 38 1 -1.2216 4.5044 6.9171 39 1 -2.8019 6.2554 3.3475 40 1 -3.1244 7.0099 4.9272 41 1 -1.4877 7.0684 4.2309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273827415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:44 Heat of formation + Delta-G solvation = 1.091941 kcal Electronic energy + Delta-G solvation = -22171.897951 eV Core-core repulsion = 18861.589570 eV Total energy + Delta-G solvation = -3310.308381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.93967 -38.97384 -37.56706 -35.16026 -33.74280 -32.36843 -31.15638 -30.59481 -27.73494 -27.61490 -27.10180 -24.42768 -23.12361 -22.84295 -21.31603 -19.77135 -19.15503 -17.63465 -17.34067 -16.84371 -15.77545 -15.34508 -14.80680 -14.55060 -14.41130 -14.34660 -14.21376 -13.63253 -13.21242 -12.72551 -12.69099 -12.61970 -12.20802 -12.00244 -11.79391 -11.53861 -11.40654 -11.35944 -11.34243 -11.13852 -11.01354 -10.81143 -10.38254 -10.26933 -10.15228 -9.73313 -9.38256 -9.35733 -9.12111 -8.51249 -7.93208 -6.15431 -4.21942 1.35584 1.87877 2.94440 3.25743 3.32029 3.34092 3.72141 3.79642 4.18828 4.33253 4.51591 4.56560 4.58882 4.94114 5.14818 5.17796 5.25286 5.28623 5.41347 5.44864 5.53934 5.54953 5.58230 5.72202 5.84470 5.94525 5.98313 6.01018 6.32747 6.37417 6.56995 6.97475 7.12319 7.26207 7.33379 7.56255 7.68383 7.79949 8.04340 8.17908 8.59248 8.73765 8.99143 9.43894 10.92538 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030689 B = 0.003764 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.150966 B = 7437.102610 C = 7910.338062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.268 3.732 4 H 0.058 0.942 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.688 5.688 14 C 0.580 3.420 15 O -0.532 6.532 16 C -0.013 4.013 17 C -0.179 4.179 18 C -0.034 4.034 19 C 0.018 3.982 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.142 4.142 23 O 0.118 5.882 24 N -0.337 5.337 25 H 0.025 0.975 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.265 0.735 31 H 0.395 0.605 32 H 0.176 0.824 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 8.568 15.597 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.167 3.833 4 H 0.076 0.924 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.335 5.335 14 C 0.362 3.638 15 O -0.408 6.408 16 C -0.173 4.173 17 C -0.202 4.202 18 C -0.097 4.097 19 C 0.016 3.984 20 C -0.199 4.199 21 C -0.204 4.204 22 C -0.199 4.199 23 O 0.044 5.956 24 N -0.038 5.038 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.193 0.807 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.883 8.010 14.953 20.154 hybrid contribution 0.654 -0.047 -0.195 0.684 sum -10.228 7.963 14.757 19.642 Atomic orbital electron populations 1.21856 0.98065 0.98352 1.01412 1.21867 0.92954 0.99632 1.01577 1.18918 0.94779 0.89133 0.80508 0.92388 1.21176 0.90410 1.43690 1.02326 0.91981 1.24878 0.98621 0.94969 0.94986 1.69964 1.35472 1.43013 1.03286 0.86482 0.84818 0.78700 0.77259 1.20372 1.21099 1.19860 1.46456 1.13717 1.54359 1.18976 1.16923 0.83488 0.79262 0.84149 1.90764 1.51348 1.60037 1.38670 1.23996 0.93472 1.03881 0.95974 1.22350 0.99588 1.02463 0.95769 1.24367 0.87852 1.02135 0.95362 1.19141 0.90899 0.94168 0.94157 1.21946 0.95310 0.99739 1.02908 1.21905 1.01421 1.02632 0.94472 1.21949 1.02237 0.94899 1.00844 1.84760 1.23051 1.52481 1.35315 1.74181 1.19685 1.11362 0.98605 0.95552 0.92853 0.94240 0.94628 0.89600 0.92491 0.77221 0.80650 0.91930 0.91163 0.91717 0.91729 0.91480 0.91738 0.91701 0.91170 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.15 0.32 -2.82 16 2 C -0.12 -2.97 5.49 -26.74 -0.15 -3.12 16 3 C 0.27 6.91 2.11 -69.09 -0.15 6.76 16 4 H 0.06 1.71 7.55 -51.93 -0.39 1.32 16 5 C -0.54 -14.56 8.67 -34.44 -0.30 -14.85 16 6 H 0.06 1.63 7.73 -52.48 -0.41 1.23 16 7 C 0.07 1.89 5.19 -17.82 -0.09 1.79 16 8 N -0.88 -24.97 12.00 55.43 0.67 -24.31 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.69 -15.45 5.02 -55.73 -0.28 -15.73 16 14 C 0.58 12.51 6.43 -12.10 -0.08 12.43 16 15 O -0.53 -12.68 14.09 5.37 0.08 -12.60 16 16 C -0.01 -0.24 7.19 -82.52 -0.59 -0.83 16 17 C -0.18 -2.58 10.40 -39.07 -0.41 -2.99 16 18 C -0.03 -0.41 5.76 -35.35 -0.20 -0.61 16 19 C 0.02 0.14 0.94 -155.66 -0.15 0.00 16 20 C -0.14 -0.99 8.36 37.16 0.31 -0.68 16 21 C -0.15 -1.02 8.07 37.16 0.30 -0.72 16 22 C -0.14 -1.00 8.36 37.16 0.31 -0.69 16 23 O 0.12 1.66 10.65 17.25 0.18 1.85 16 24 N -0.34 -5.70 11.84 33.29 0.39 -5.31 16 25 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.05 1.26 7.87 -51.93 -0.41 0.85 16 27 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.09 2.28 6.64 -51.93 -0.34 1.94 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 8.27 8.29 -40.82 -0.34 7.94 16 32 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.48 8.03 -51.93 -0.42 0.06 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -30.29 339.39 -6.12 -36.42 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.38 Total: 5.00 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.87 Total: -6.32 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.78 Total: -45.34 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.26 Total: -10.76 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.29 -6.12 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273827415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.507 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds