Wall clock time and date at job start Tue Mar 31 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.09006 * 109.46987 * 305.37014 * 3 2 1 5 5 C 1.50700 * 109.47049 * 185.37444 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79379 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79491 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47432 * 65.37055 * 3 2 1 14 14 C 1.34775 * 120.00116 * 275.00316 * 13 3 2 15 15 O 1.21498 * 120.00159 * 359.97438 * 14 13 3 16 16 C 1.48338 * 120.00042 * 179.97438 * 14 13 3 17 17 C 1.42277 * 126.93532 * 179.97438 * 16 14 13 18 18 C 1.35316 * 103.91584 * 180.02562 * 17 16 14 19 19 C 1.50698 * 126.66110 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.47515 * 59.99654 * 19 18 17 21 21 C 1.52999 * 109.47232 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.46924 * 299.99449 * 19 18 17 23 23 O 1.34013 * 106.67092 * 0.02562 * 18 17 16 24 24 N 1.20904 * 111.84839 * 359.70688 * 23 18 17 25 25 H 1.09009 * 109.47500 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47343 * 60.00053 * 1 2 3 27 27 H 1.09005 * 109.47344 * 300.00308 * 1 2 3 28 28 H 1.09000 * 109.47343 * 119.99947 * 2 1 3 29 29 H 1.09005 * 109.47344 * 239.99692 * 2 1 3 30 30 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99975 * 94.99833 * 13 3 2 32 32 H 1.07999 * 128.03911 * 0.02562 * 17 16 14 33 33 H 1.09000 * 109.47033 * 59.99947 * 20 19 18 34 34 H 1.08999 * 109.47117 * 180.02562 * 20 19 18 35 35 H 1.08996 * 109.46911 * 300.00237 * 20 19 18 36 36 H 1.09006 * 109.46885 * 59.99669 * 21 19 18 37 37 H 1.08999 * 109.47272 * 179.97438 * 21 19 18 38 38 H 1.09000 * 109.46928 * 299.99815 * 21 19 18 39 39 H 1.09006 * 109.46849 * 60.00888 * 22 19 18 40 40 H 1.08999 * 109.47281 * 180.02562 * 22 19 18 41 41 H 1.08993 * 109.47313 * 300.00208 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6002 1.9833 -0.8380 5 6 3.5410 1.4445 -0.1331 6 1 4.1542 1.8170 0.6743 7 6 4.1317 0.9709 -1.2854 8 7 3.3878 0.6473 -2.3205 9 14 5.9886 0.7890 -1.3764 10 1 6.3862 -0.5220 -0.8033 11 1 6.4242 0.8621 -2.7942 12 1 6.6316 1.8823 -0.6041 13 7 1.6601 2.0948 1.2555 14 6 0.4435 2.6614 1.3793 15 8 -0.3380 2.6317 0.4495 16 6 0.0587 3.3215 2.6508 17 6 -1.1779 3.9623 2.9413 18 6 -1.0286 4.3958 4.2144 19 6 -2.0451 5.1486 5.0336 20 6 -3.3111 4.3019 5.1791 21 6 -1.4667 5.4425 6.4193 22 6 -2.3895 6.4652 4.3345 23 8 0.1987 4.0256 4.6051 24 7 0.7871 3.4283 3.7341 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.8033 0.3145 -3.1314 31 1 2.2841 2.1188 1.9977 32 1 -2.0362 4.0762 2.2957 33 1 -3.0657 3.3639 5.6772 34 1 -4.0464 4.8466 5.7713 35 1 -3.7233 4.0921 4.1921 36 1 -0.5646 6.0456 6.3160 37 1 -2.2017 5.9874 7.0117 38 1 -1.2216 4.5044 6.9171 39 1 -2.8019 6.2554 3.3475 40 1 -3.1244 7.0099 4.9272 41 1 -1.4877 7.0684 4.2309 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273827415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:44 Heat of formation + Delta-G solvation = -17.607309 kcal Electronic energy + Delta-G solvation = -22172.708812 eV Core-core repulsion = 18861.589570 eV Total energy + Delta-G solvation = -3311.119241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.19526 -40.76677 -38.26552 -37.09281 -35.11206 -34.33055 -32.91489 -31.86837 -29.17559 -28.23796 -28.14272 -26.04581 -24.71318 -24.19763 -22.61422 -21.55824 -20.76451 -18.88874 -18.72199 -18.25331 -17.42607 -17.27111 -16.34602 -16.21528 -15.75713 -15.16111 -14.96044 -14.88968 -14.65637 -14.59747 -14.05437 -13.55267 -13.33221 -13.21319 -13.18431 -12.98996 -12.68152 -12.67381 -12.54035 -12.27849 -12.22667 -12.15819 -11.99549 -11.76566 -11.74011 -11.48195 -11.18267 -11.16701 -10.60045 -10.45754 -9.84310 -8.24263 -6.39092 0.07889 0.66738 1.41785 1.42889 1.52653 1.89864 2.13159 2.16481 2.41333 2.96964 3.07094 3.43641 3.84140 3.96994 3.98436 4.07756 4.27563 4.39808 4.43425 4.46623 4.64381 4.80843 4.82487 4.84170 4.91615 4.97923 5.03156 5.03529 5.13025 5.15632 5.31324 5.32875 5.36865 5.41857 5.45504 5.51992 5.66306 5.76771 5.98648 6.64406 6.68604 7.03203 7.16917 7.34229 8.84132 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.030689 B = 0.003764 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.150966 B = 7437.102610 C = 7910.338062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.114 4.114 3 C 0.276 3.724 4 H 0.012 0.988 5 C -0.556 4.556 6 H 0.066 0.934 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.689 5.689 14 C 0.580 3.420 15 O -0.560 6.560 16 C -0.042 4.042 17 C -0.188 4.188 18 C -0.009 4.009 19 C 0.018 3.982 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.142 4.142 23 O 0.133 5.867 24 N -0.351 5.351 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.402 0.598 32 H 0.188 0.812 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 9.371 17.917 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C 0.173 3.827 4 H 0.029 0.971 5 C -0.594 4.594 6 H 0.084 0.916 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.338 5.338 14 C 0.365 3.635 15 O -0.439 6.439 16 C -0.200 4.200 17 C -0.211 4.211 18 C -0.072 4.072 19 C 0.017 3.983 20 C -0.199 4.199 21 C -0.205 4.205 22 C -0.199 4.199 23 O 0.056 5.944 24 N -0.050 5.050 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.205 0.795 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.380 8.808 17.282 22.489 hybrid contribution 0.724 -0.209 -0.834 1.124 sum -10.656 8.599 16.448 21.402 Atomic orbital electron populations 1.21699 0.96517 0.99742 1.00396 1.21719 0.94263 0.98582 1.00753 1.18556 0.94220 0.89417 0.80482 0.97056 1.21484 0.91135 1.44040 1.02777 0.91551 1.25742 1.03393 0.94375 0.94454 1.70095 1.37503 1.43548 1.03826 0.85395 0.78903 0.78994 0.77293 1.19412 1.20821 1.19207 1.46263 1.14541 1.54812 1.18141 1.17283 0.82599 0.78503 0.85150 1.90736 1.51984 1.60994 1.40195 1.23586 0.95463 1.05931 0.95037 1.22503 0.98840 1.02771 0.96983 1.25137 0.87085 1.00202 0.94821 1.19453 0.90142 0.94359 0.94354 1.21984 0.95043 0.99681 1.03176 1.21942 1.01998 1.02786 0.93740 1.21989 1.02692 0.94208 1.01057 1.84734 1.23897 1.51453 1.34365 1.74173 1.20284 1.11908 0.98607 0.92836 0.94853 0.94199 0.93689 0.91907 0.92334 0.76367 0.79517 0.92432 0.88480 0.92145 0.92178 0.88891 0.92075 0.92154 0.88462 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.52 71.98 0.61 -5.15 16 2 C -0.11 -5.73 5.49 30.59 0.17 -5.56 16 3 C 0.28 14.77 2.11 44.25 0.09 14.86 16 4 H 0.01 0.72 7.55 -2.38 -0.02 0.70 16 5 C -0.56 -30.71 8.67 25.60 0.22 -30.49 16 6 H 0.07 3.52 7.73 -2.91 -0.02 3.49 16 7 C 0.02 1.18 5.19 84.65 0.44 1.62 16 8 N -0.91 -53.02 12.00 21.45 0.26 -52.76 16 9 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.69 -31.94 5.02 -448.52 -2.25 -34.19 16 14 C 0.58 25.80 6.43 86.93 0.56 26.36 16 15 O -0.56 -27.78 14.09 -3.71 -0.05 -27.84 16 16 C -0.04 -1.54 7.19 42.97 0.31 -1.23 16 17 C -0.19 -5.29 10.40 22.60 0.24 -5.05 16 18 C -0.01 -0.20 5.76 25.01 0.14 -0.06 16 19 C 0.02 0.24 0.94 -52.93 -0.05 0.19 16 20 C -0.14 -1.54 8.36 71.98 0.60 -0.94 16 21 C -0.15 -1.56 8.07 71.98 0.58 -0.98 16 22 C -0.14 -1.59 8.36 71.98 0.60 -0.99 16 23 O 0.13 3.58 10.65 71.91 0.77 4.35 16 24 N -0.35 -11.74 11.84 -49.52 -0.59 -12.33 16 25 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.03 1.62 7.87 -2.39 -0.02 1.60 16 27 H 0.04 1.79 5.64 -2.38 -0.01 1.77 16 28 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 3.44 6.64 -2.38 -0.02 3.42 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.40 17.23 8.29 -92.71 -0.77 16.46 16 32 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.73 8.03 -2.39 -0.02 0.71 16 36 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.74 8.03 -2.38 -0.02 0.73 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -67.25 339.39 4.93 -62.32 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.26 Total: 22.81 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.52 Total: -7.42 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -2.58 Total: -99.28 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.71 Total: -23.49 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.25 4.93 -62.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273827415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.709 kcal (2) G-P(sol) polarization free energy of solvation -67.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds